Wall clock time and date at job start Tue Mar 31 2020 20:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30992 * 1 3 3 C 1.50707 * 120.00215 * 2 1 4 4 C 1.53001 * 109.47000 * 124.99931 * 3 2 1 5 5 O 1.42899 * 109.46897 * 180.02562 * 4 3 2 6 6 C 1.42905 * 114.00017 * 179.97438 * 5 4 3 7 7 H 1.08999 * 109.46798 * 330.00325 * 6 5 4 8 8 C 1.52999 * 109.46909 * 89.99734 * 6 5 4 9 9 C 1.50703 * 109.47027 * 209.99706 * 6 5 4 10 10 O 1.21275 * 120.00111 * 355.00399 * 9 6 5 11 11 N 1.34778 * 119.99612 * 174.99970 * 9 6 5 12 12 C 1.46928 * 120.55057 * 179.97438 * 11 9 6 13 13 C 1.53342 * 108.68473 * 125.63017 * 12 11 9 14 14 C 1.52110 * 109.44249 * 53.30481 * 13 12 11 15 15 C 1.54385 * 110.50739 * 64.08966 * 14 13 12 16 16 C 1.54457 * 102.87109 * 83.33374 * 15 14 13 17 17 N 1.47083 * 107.29725 * 21.50085 * 16 15 14 18 18 C 1.36935 * 125.62931 * 180.96847 * 17 16 15 19 19 H 1.08003 * 119.99937 * 168.95343 * 18 17 16 20 20 C 1.38811 * 119.99964 * 348.94815 * 18 17 16 21 21 N 1.31619 * 119.99929 * 165.65470 * 20 18 17 22 22 Si 1.86799 * 120.00069 * 345.65523 * 20 18 17 23 23 H 1.48500 * 109.47088 * 185.28736 * 22 20 18 24 24 H 1.48495 * 109.46844 * 305.28614 * 22 20 18 25 25 H 1.48497 * 109.46908 * 65.28631 * 22 20 18 26 26 C 1.47575 * 108.74515 * 1.23423 * 17 16 15 27 27 C 1.52103 * 111.59976 * 300.69054 * 14 13 12 28 28 C 1.46928 * 120.55101 * 359.97438 * 11 9 6 29 29 H 1.08008 * 120.00106 * 359.97438 * 1 2 3 30 30 H 1.07997 * 120.00160 * 179.97438 * 1 2 3 31 31 H 1.07994 * 120.00206 * 179.97438 * 2 1 3 32 32 H 1.09007 * 109.46643 * 5.00039 * 3 2 1 33 33 H 1.08990 * 109.47093 * 245.00051 * 3 2 1 34 34 H 1.08990 * 109.47256 * 60.00248 * 4 3 2 35 35 H 1.09002 * 109.47059 * 299.99798 * 4 3 2 36 36 H 1.08997 * 109.47474 * 179.97438 * 8 6 5 37 37 H 1.08996 * 109.47461 * 300.00106 * 8 6 5 38 38 H 1.09002 * 109.47169 * 60.00218 * 8 6 5 39 39 H 1.08999 * 109.60337 * 5.87416 * 12 11 9 40 40 H 1.09002 * 109.60479 * 245.38772 * 12 11 9 41 41 H 1.08999 * 109.47461 * 293.31423 * 13 12 11 42 42 H 1.09004 * 109.48038 * 173.29557 * 13 12 11 43 43 H 1.08995 * 110.73888 * 324.98680 * 15 14 13 44 44 H 1.09004 * 110.73381 * 201.67143 * 15 14 13 45 45 H 1.09003 * 109.87682 * 262.08138 * 16 15 14 46 46 H 1.09002 * 109.88538 * 140.92812 * 16 15 14 47 47 H 0.97002 * 120.00420 * 354.93210 * 21 20 18 48 48 H 1.09003 * 110.37719 * 95.25320 * 26 17 16 49 49 H 1.08995 * 110.38134 * 217.60924 * 26 17 16 50 50 H 1.08994 * 109.47603 * 179.28981 * 27 14 13 51 51 H 1.09001 * 109.48068 * 299.31611 * 27 14 13 52 52 H 1.08992 * 109.60702 * 354.12479 * 28 11 9 53 53 H 1.08995 * 109.60156 * 114.60997 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 8 3.7491 2.5708 1.1820 6 6 4.6878 2.7000 2.2517 7 1 4.3352 2.1352 3.1147 8 6 6.0465 2.1556 1.8065 9 6 4.8268 4.1534 2.6252 10 8 4.2558 5.0037 1.9758 11 7 5.5857 4.5082 3.6810 12 6 5.7301 5.9216 4.0556 13 6 5.3415 6.0811 5.5304 14 6 6.1417 5.1004 6.3738 15 6 7.6483 5.4298 6.3029 16 6 7.8080 6.5402 7.3647 17 7 6.6711 6.4265 8.2908 18 6 6.4329 7.2413 9.3653 19 1 5.4844 7.1934 9.8795 20 6 7.4106 8.1287 9.7936 21 7 7.0996 9.0983 10.6275 22 14 9.1678 7.9468 9.1864 23 1 10.0366 8.9288 9.8836 24 1 9.6494 6.5710 9.4696 25 1 9.2141 8.1961 7.7232 26 6 5.8327 5.2855 7.8748 27 6 5.8901 3.6616 5.9493 28 6 6.2822 3.4880 4.4766 29 1 -0.5401 0.9354 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8499 -0.9352 0.0004 32 1 1.3585 2.1317 0.0896 33 1 2.6212 1.4026 -0.9313 34 1 3.7399 0.5066 1.0921 35 1 2.4772 1.2356 2.1130 36 1 6.7627 2.2546 2.6222 37 1 5.9460 1.1045 1.5363 38 1 6.3992 2.7205 0.9435 39 1 5.0738 6.5330 3.4364 40 1 6.7650 6.2334 3.9145 41 1 4.2771 5.8788 5.6496 42 1 5.5565 7.0993 5.8549 43 1 7.9162 5.8005 5.3136 44 1 8.2469 4.5571 6.5643 45 1 7.7972 7.5179 6.8829 46 1 8.7433 6.4025 7.9073 47 1 6.1750 9.2383 10.8854 48 1 6.1054 4.3904 8.4340 49 1 4.7775 5.5173 8.0187 50 1 6.4883 2.9909 6.5659 51 1 4.8335 3.4251 6.0744 52 1 5.9898 2.4952 4.1349 53 1 7.3596 3.6122 4.3678 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495598039.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:34:54 Heat of formation + Delta-G solvation = -48.915983 kcal Electronic energy + Delta-G solvation = -30326.385476 eV Core-core repulsion = 26391.758112 eV Total energy + Delta-G solvation = -3934.627363 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.82280 -40.38118 -38.87558 -37.38186 -36.02310 -35.03265 -33.49977 -32.75189 -31.58340 -30.62471 -29.89176 -28.69617 -26.03739 -25.19466 -24.31078 -24.07983 -23.52810 -22.25151 -21.15116 -20.61159 -19.85973 -18.95617 -18.31202 -17.70044 -17.12816 -17.02886 -16.80090 -16.71335 -16.08544 -15.73079 -15.55581 -15.33865 -15.02358 -14.94274 -14.81500 -14.61630 -14.34021 -14.15444 -13.98426 -13.71624 -13.45221 -13.27601 -13.09335 -12.97906 -12.91163 -12.74673 -12.58777 -12.46524 -12.20082 -12.03294 -11.96870 -11.89642 -11.63386 -11.57134 -11.42750 -11.30103 -10.96381 -10.87537 -10.61345 -10.45565 -10.26777 -9.66298 -9.04994 -8.64971 -5.46164 1.32763 1.40253 1.50163 1.53265 1.72734 1.74250 2.56158 2.79269 3.12738 3.33539 3.42000 3.53864 3.72001 3.80975 3.86299 3.98670 4.03055 4.06506 4.12027 4.15900 4.23439 4.27850 4.31347 4.43907 4.45264 4.47464 4.57219 4.61233 4.68176 4.71049 4.73202 4.75521 4.84401 4.87515 4.90495 4.91162 5.02706 5.04680 5.07910 5.08958 5.10782 5.24114 5.27067 5.37640 5.42140 5.52697 5.59617 5.72094 5.85532 6.10335 6.11158 6.40436 6.83948 7.12237 7.47219 8.11782 8.87805 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026885 B = 0.002253 C = 0.002209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.205662 B =12425.627462 C =12673.050587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.157 4.157 3 C -0.094 4.094 4 C 0.062 3.938 5 O -0.391 6.391 6 C 0.074 3.926 7 H 0.113 0.887 8 C -0.172 4.172 9 C 0.508 3.492 10 O -0.580 6.580 11 N -0.600 5.600 12 C 0.120 3.880 13 C -0.105 4.105 14 C -0.059 4.059 15 C -0.110 4.110 16 C 0.099 3.901 17 N -0.632 5.632 18 C -0.307 4.307 19 H 0.040 0.960 20 C -0.085 4.085 21 N -0.968 5.968 22 Si 1.115 2.885 23 H -0.317 1.317 24 H -0.281 1.281 25 H -0.252 1.252 26 C 0.140 3.860 27 C -0.113 4.113 28 C 0.099 3.901 29 H 0.091 0.909 30 H 0.113 0.887 31 H 0.129 0.871 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.086 0.914 41 H 0.052 0.948 42 H 0.054 0.946 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.027 0.973 46 H 0.023 0.977 47 H 0.245 0.755 48 H 0.036 0.964 49 H 0.023 0.977 50 H 0.104 0.896 51 H 0.067 0.933 52 H 0.120 0.880 53 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.867 -25.160 -22.528 33.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.175 4.175 3 C -0.131 4.131 4 C -0.014 4.014 5 O -0.310 6.310 6 C 0.013 3.987 7 H 0.130 0.870 8 C -0.230 4.230 9 C 0.296 3.704 10 O -0.459 6.459 11 N -0.334 5.334 12 C -0.002 4.002 13 C -0.144 4.144 14 C -0.060 4.060 15 C -0.147 4.147 16 C -0.025 4.025 17 N -0.360 5.360 18 C -0.435 4.435 19 H 0.058 0.942 20 C -0.277 4.277 21 N -0.613 5.613 22 Si 0.942 3.058 23 H -0.246 1.246 24 H -0.208 1.208 25 H -0.177 1.177 26 C 0.015 3.985 27 C -0.151 4.151 28 C -0.022 4.022 29 H 0.110 0.890 30 H 0.132 0.868 31 H 0.146 0.854 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.119 0.881 37 H 0.111 0.889 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.104 0.896 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.113 0.887 44 H 0.116 0.884 45 H 0.045 0.955 46 H 0.040 0.960 47 H 0.054 0.946 48 H 0.054 0.946 49 H 0.041 0.959 50 H 0.122 0.878 51 H 0.086 0.914 52 H 0.138 0.862 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -1.735 -23.933 -22.806 33.105 hybrid contribution -2.315 0.354 0.978 2.538 sum -4.050 -23.580 -21.827 32.386 Atomic orbital electron populations 1.24081 0.96136 1.02588 1.00124 1.22850 0.96054 0.97828 1.00742 1.20638 0.97774 0.96242 0.98486 1.22701 0.94240 0.85760 0.98724 1.88002 1.55122 1.39279 1.48639 1.22008 0.92777 0.91733 0.92173 0.86979 1.22430 0.94122 1.02865 1.03556 1.21119 0.77735 0.91742 0.79770 1.90683 1.48042 1.53803 1.53405 1.48131 1.48303 1.08016 1.28960 1.21536 1.02258 0.82077 0.94358 1.21520 0.99209 0.99428 0.94200 1.21022 0.95293 0.96424 0.93223 1.22692 0.95614 0.98093 0.98291 1.22158 0.90031 0.98641 0.91646 1.44933 1.27780 1.33372 1.29900 1.20039 0.99881 1.15771 1.07851 0.94239 1.27214 1.08079 0.94241 0.98197 1.71000 1.19601 1.31942 1.38711 0.83326 0.71431 0.74582 0.76414 1.24635 1.20812 1.17710 1.21774 0.93555 0.89384 0.93749 1.21765 1.02979 0.93944 0.96454 1.22367 0.98424 0.91907 0.89550 0.89030 0.86830 0.85351 0.92307 0.90252 0.90422 0.92694 0.88071 0.88908 0.92698 0.91160 0.89578 0.92967 0.92742 0.88691 0.88377 0.95533 0.95979 0.94631 0.94629 0.95863 0.87808 0.91395 0.86204 0.88296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 14.32 67.79 0.97 -1.06 16 2 C -0.16 -1.64 9.52 25.66 0.24 -1.40 16 3 C -0.09 -1.32 6.03 29.85 0.18 -1.14 16 4 C 0.06 0.83 5.73 71.98 0.41 1.25 16 5 O -0.39 -8.27 9.53 -129.99 -1.24 -9.51 16 6 C 0.07 1.19 2.30 29.85 0.07 1.26 16 7 H 0.11 1.17 7.09 -2.39 -0.02 1.16 16 8 C -0.17 -1.69 9.10 71.98 0.65 -1.04 16 9 C 0.51 12.40 7.12 87.66 0.62 13.03 16 10 O -0.58 -20.51 15.91 15.97 0.25 -20.25 16 11 N -0.60 -12.12 2.96 -818.25 -2.42 -14.54 16 12 C 0.12 2.97 6.12 86.41 0.53 3.50 16 13 C -0.11 -3.03 4.87 30.42 0.15 -2.88 16 14 C -0.06 -1.53 0.55 -51.84 -0.03 -1.56 16 15 C -0.11 -2.83 4.91 31.56 0.16 -2.67 16 16 C 0.10 3.93 4.24 86.76 0.37 4.30 16 17 N -0.63 -29.96 3.31 -692.29 -2.29 -32.25 16 18 C -0.31 -18.05 10.56 84.03 0.89 -17.17 16 19 H 0.04 2.54 8.06 -2.91 -0.02 2.52 16 20 C -0.09 -5.19 5.50 84.86 0.47 -4.72 16 21 N -0.97 -63.83 13.70 21.65 0.30 -63.54 16 22 Si 1.11 54.24 24.53 68.60 1.68 55.92 16 23 H -0.32 -16.02 7.11 99.48 0.71 -15.31 16 24 H -0.28 -12.65 6.84 99.48 0.68 -11.97 16 25 H -0.25 -10.76 5.43 99.48 0.54 -10.22 16 26 C 0.14 5.17 6.16 86.63 0.53 5.71 16 27 C -0.11 -1.85 4.84 30.43 0.15 -1.70 16 28 C 0.10 1.18 4.72 86.43 0.41 1.59 16 29 H 0.09 1.06 7.84 -2.91 -0.02 1.04 16 30 H 0.11 0.85 8.06 -2.91 -0.02 0.83 16 31 H 0.13 0.87 8.06 -2.91 -0.02 0.85 16 32 H 0.06 1.02 7.79 -2.38 -0.02 1.00 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.08 0.64 7.87 -2.39 -0.02 0.62 16 35 H 0.05 0.69 8.08 -2.39 -0.02 0.67 16 36 H 0.10 0.55 5.40 -2.39 -0.01 0.54 16 37 H 0.09 0.52 7.87 -2.39 -0.02 0.50 16 38 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.07 2.06 6.99 -2.39 -0.02 2.04 16 40 H 0.09 1.88 6.55 -2.39 -0.02 1.87 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.05 1.92 7.82 -2.38 -0.02 1.90 16 43 H 0.09 2.02 6.17 -2.39 -0.01 2.01 16 44 H 0.10 2.02 7.98 -2.38 -0.02 2.00 16 45 H 0.03 1.14 6.79 -2.39 -0.02 1.12 16 46 H 0.02 0.93 3.81 -2.39 -0.01 0.92 16 47 H 0.24 16.29 8.73 -92.71 -0.81 15.48 16 48 H 0.04 1.25 8.00 -2.39 -0.02 1.23 16 49 H 0.02 0.92 8.03 -2.39 -0.02 0.91 16 50 H 0.10 1.32 8.09 -2.39 -0.02 1.30 16 51 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 52 H 0.12 0.69 4.62 -2.39 -0.01 0.68 16 53 H 0.10 0.86 7.62 -2.39 -0.02 0.84 16 Total: -1.00 -83.54 395.77 3.70 -79.85 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 0.64 Total: 9.03 kcal Atomic # 6 Polarization: -11.48 SS G_CDS: 6.77 Total: -4.71 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -4.42 Total: -110.33 kcal Atomic # 8 Polarization: -28.78 SS G_CDS: -0.98 Total: -29.77 kcal Atomic # 14 Polarization: 54.24 SS G_CDS: 1.68 Total: 55.92 kcal Total: -83.54 3.70 -79.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495598039.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.934 kcal (2) G-P(sol) polarization free energy of solvation -83.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds