Wall clock time and date at job start Tue Mar 31 2020 20:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17408 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 O 1.42908 * 109.46992 * 210.60519 * 3 2 1 5 5 C 1.42902 * 114.00093 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.46795 * 29.99680 * 5 4 3 7 7 C 1.52995 * 109.46976 * 270.00345 * 5 4 3 8 8 C 1.50699 * 109.47043 * 150.00030 * 5 4 3 9 9 O 1.21277 * 119.99923 * 4.99904 * 8 5 4 10 10 N 1.34774 * 119.99788 * 185.00349 * 8 5 4 11 11 C 1.46499 * 119.99749 * 179.97438 * 10 8 5 12 12 C 1.52999 * 109.46935 * 179.97438 * 11 10 8 13 13 N 1.46509 * 109.46883 * 180.02562 * 12 11 10 14 14 C 1.36932 * 119.99716 * 90.00230 * 13 12 11 15 15 H 1.08002 * 119.99947 * 217.41612 * 14 13 12 16 16 C 1.38810 * 120.00309 * 37.42233 * 14 13 12 17 17 N 1.31612 * 120.00148 * 21.25588 * 16 14 13 18 18 Si 1.86802 * 120.00028 * 201.25755 * 16 14 13 19 19 H 1.48497 * 109.47081 * 89.99526 * 18 16 14 20 20 H 1.48500 * 109.47201 * 209.99948 * 18 16 14 21 21 H 1.48500 * 109.46910 * 329.99852 * 18 16 14 22 22 C 1.46497 * 119.99674 * 269.99737 * 13 12 11 23 23 C 1.54244 * 108.89755 * 237.67067 * 22 13 12 24 24 C 1.50472 * 108.52577 * 159.27023 * 23 22 13 25 25 C 1.54065 * 112.50299 * 94.15214 * 24 23 22 26 26 C 1.54068 * 112.81486 * 318.28286 * 25 24 23 27 27 C 1.50478 * 112.49567 * 318.28435 * 26 25 24 28 28 C 1.45545 * 108.89168 * 114.78925 * 22 13 12 29 29 H 4.38456 * 5.44399 * 179.97438 * 4 1 2 30 30 H 1.08993 * 109.47229 * 90.60410 * 3 2 1 31 31 H 1.09001 * 109.47340 * 330.60190 * 3 2 1 32 32 H 1.09002 * 109.48073 * 59.99666 * 7 5 4 33 33 H 1.09007 * 109.46807 * 299.99666 * 7 5 4 34 34 H 1.09001 * 109.47051 * 180.02562 * 7 5 4 35 35 H 0.97000 * 119.99905 * 359.97438 * 10 8 5 36 36 H 1.08997 * 109.47340 * 299.99960 * 11 10 8 37 37 H 1.09006 * 109.47188 * 59.99721 * 11 10 8 38 38 H 1.08995 * 109.47512 * 299.99779 * 12 11 10 39 39 H 1.09000 * 109.47335 * 60.00439 * 12 11 10 40 40 H 0.97008 * 119.99981 * 174.95260 * 17 16 14 41 41 H 1.08995 * 108.87744 * 356.18392 * 22 13 12 42 42 H 1.09006 * 109.62709 * 278.98209 * 23 22 13 43 43 H 1.09003 * 109.62440 * 39.55228 * 23 22 13 44 44 H 1.09000 * 108.87498 * 333.36575 * 24 23 22 45 45 H 1.09004 * 108.87338 * 214.93413 * 24 23 22 46 46 H 1.09001 * 108.81214 * 197.42518 * 25 24 23 47 47 H 1.08996 * 108.72613 * 79.07884 * 25 24 23 48 48 H 1.08990 * 108.87570 * 197.50731 * 26 25 24 49 49 H 1.08999 * 108.87454 * 79.05957 * 26 25 24 50 50 H 1.09001 * 109.63001 * 334.44510 * 27 26 25 51 51 H 1.08992 * 109.63054 * 213.86397 * 27 26 25 52 52 H 1.08998 * 108.89862 * 303.43954 * 28 22 13 53 53 H 1.09000 * 108.89362 * 62.03344 * 28 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.1605 0.6860 5 6 4.5463 1.2580 0.7439 6 1 4.9792 0.7806 -0.1351 7 6 5.0544 0.5586 2.0062 8 6 4.9495 2.7097 0.7771 9 8 4.1008 3.5734 0.8451 10 7 6.2533 3.0482 0.7312 11 6 6.6452 4.4594 0.7629 12 6 8.1701 4.5667 0.6999 13 7 8.5620 5.9780 0.7322 14 6 8.7971 6.5960 1.9313 15 1 8.4987 7.6237 2.0769 16 6 9.4191 5.9016 2.9598 17 7 10.1468 4.8386 2.6903 18 14 9.2233 6.4759 4.7266 19 1 8.0383 5.8175 5.3326 20 1 10.4387 6.1179 5.5011 21 1 9.0372 7.9490 4.7504 22 6 8.7025 6.7280 -0.5184 23 6 10.1352 7.2929 -0.6038 24 6 10.4421 7.6023 -2.0441 25 6 10.1484 9.0704 -2.4073 26 6 8.8334 9.5865 -1.7923 27 6 7.7230 8.5743 -1.8750 28 6 7.6908 7.7735 -0.5571 29 1 -1.0502 -0.0003 -0.0004 30 1 3.0093 0.0117 -1.0275 31 1 3.0098 -0.8945 0.5045 32 1 4.7628 -0.4915 1.9823 33 1 4.6214 1.0360 2.8854 34 1 6.1409 0.6333 2.0507 35 1 6.9320 2.3573 0.6772 36 1 6.2085 4.9771 -0.0911 37 1 6.2870 4.9153 1.6860 38 1 8.6064 4.0492 1.5542 39 1 8.5286 4.1108 -0.2230 40 1 10.6407 4.3966 3.3986 41 1 8.5415 6.0497 -1.3563 42 1 10.2053 8.2047 -0.0105 43 1 10.8432 6.5537 -0.2291 44 1 9.8392 6.9542 -2.6801 45 1 11.4958 7.3964 -2.2322 46 1 10.0875 9.1588 -3.4920 47 1 10.9705 9.6905 -2.0501 48 1 8.5275 10.4894 -2.3205 49 1 9.0073 9.8344 -0.7452 50 1 7.9054 7.8979 -2.7100 51 1 6.7709 9.0859 -2.0159 52 1 6.7072 7.3173 -0.4453 53 1 7.8586 8.4580 0.2744 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001499517956.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:11 Heat of formation + Delta-G solvation = -37.313168 kcal Electronic energy + Delta-G solvation = -29888.312330 eV Core-core repulsion = 25954.188103 eV Total energy + Delta-G solvation = -3934.124227 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.04345 -40.09342 -38.89968 -37.21211 -35.58068 -34.43815 -33.64044 -32.84540 -32.61820 -31.30681 -29.12504 -28.07955 -26.41372 -25.51251 -25.26399 -24.14694 -22.45728 -21.44661 -21.28387 -19.97840 -19.66383 -18.46255 -18.14794 -17.86874 -17.18254 -16.87929 -16.51009 -16.31979 -16.11110 -15.87621 -15.51178 -15.47467 -15.02499 -14.84660 -14.67719 -14.33390 -14.02895 -13.79141 -13.71855 -13.51673 -13.45259 -13.19362 -12.97934 -12.89045 -12.82706 -12.67609 -12.47639 -12.39916 -12.10220 -11.98752 -11.72213 -11.57410 -11.49344 -11.48349 -11.26817 -11.17047 -11.08361 -10.93759 -10.82870 -10.50442 -10.46305 -10.06395 -8.47697 -7.82680 -5.38433 1.34748 1.42301 1.47550 1.52454 1.56926 1.80725 2.11752 2.51029 3.03642 3.26906 3.50672 3.63087 3.74976 3.90302 3.91954 4.03760 4.09120 4.19114 4.25640 4.37724 4.40616 4.45914 4.46746 4.50638 4.54778 4.62486 4.68064 4.72865 4.78050 4.81737 4.92887 5.00267 5.01591 5.08684 5.16655 5.19077 5.24690 5.31723 5.38085 5.42230 5.46412 5.49674 5.51272 5.65147 5.71569 5.76677 5.77292 5.90519 6.00100 6.52087 6.58490 6.61525 7.20314 7.26147 7.89988 8.41797 9.16351 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.010302 B = 0.002906 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2717.378756 B = 9632.191495 C =11421.641679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.239 4.239 3 C 0.162 3.838 4 O -0.389 6.389 5 C 0.079 3.921 6 H 0.132 0.868 7 C -0.167 4.167 8 C 0.502 3.498 9 O -0.584 6.584 10 N -0.705 5.705 11 C 0.121 3.879 12 C 0.147 3.853 13 N -0.592 5.592 14 C -0.250 4.250 15 H 0.047 0.953 16 C -0.024 4.024 17 N -0.909 5.909 18 Si 0.940 3.060 19 H -0.293 1.293 20 H -0.290 1.290 21 H -0.276 1.276 22 C 0.176 3.824 23 C -0.100 4.100 24 C -0.112 4.112 25 C -0.109 4.109 26 C -0.116 4.116 27 C -0.106 4.106 28 C -0.116 4.116 29 H 0.253 0.747 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.100 0.900 33 H 0.045 0.955 34 H 0.090 0.910 35 H 0.415 0.585 36 H 0.042 0.958 37 H 0.026 0.974 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.252 0.748 41 H 0.050 0.950 42 H 0.041 0.959 43 H 0.033 0.967 44 H 0.061 0.939 45 H 0.057 0.943 46 H 0.074 0.926 47 H 0.056 0.944 48 H 0.071 0.929 49 H 0.042 0.958 50 H 0.070 0.930 51 H 0.065 0.935 52 H 0.035 0.965 53 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.440 -8.604 -10.846 15.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.239 4.239 3 C 0.087 3.913 4 O -0.309 6.309 5 C 0.019 3.981 6 H 0.149 0.851 7 C -0.225 4.225 8 C 0.288 3.712 9 O -0.464 6.464 10 N -0.359 5.359 11 C -0.006 4.006 12 C 0.019 3.981 13 N -0.313 5.313 14 C -0.380 4.380 15 H 0.064 0.936 16 C -0.222 4.222 17 N -0.553 5.553 18 Si 0.770 3.230 19 H -0.221 1.221 20 H -0.217 1.217 21 H -0.202 1.202 22 C 0.071 3.929 23 C -0.139 4.139 24 C -0.150 4.150 25 C -0.146 4.146 26 C -0.153 4.153 27 C -0.144 4.144 28 C -0.155 4.155 29 H 0.269 0.731 30 H 0.112 0.888 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.065 0.935 34 H 0.109 0.891 35 H 0.252 0.748 36 H 0.060 0.940 37 H 0.044 0.956 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.060 0.940 43 H 0.052 0.948 44 H 0.080 0.920 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.075 0.925 48 H 0.090 0.910 49 H 0.061 0.939 50 H 0.089 0.911 51 H 0.084 0.916 52 H 0.054 0.946 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.069 -7.970 -10.606 15.032 hybrid contribution 0.171 0.060 1.513 1.524 sum -6.898 -7.910 -9.093 13.886 Atomic orbital electron populations 1.25884 0.96930 0.96906 0.98634 1.23191 0.95143 1.03142 1.02400 1.19504 0.84579 0.88954 0.98238 1.88085 1.20246 1.45031 1.77515 1.22016 0.82331 0.91147 1.02625 0.85103 1.22262 1.02732 1.02035 0.95436 1.21221 0.82442 0.91919 0.75613 1.90682 1.51721 1.53160 1.50796 1.45851 1.06913 1.09307 1.73804 1.21919 0.99128 0.80564 0.98956 1.20935 0.88819 0.86981 1.01330 1.44036 1.77701 1.07803 1.01740 1.18946 1.32067 0.97048 0.89989 0.93576 1.25590 0.96798 0.98749 1.01057 1.69957 1.29985 1.23201 1.32138 0.85706 0.76634 0.78214 0.82496 1.22086 1.21657 1.20153 1.19521 0.93267 0.92634 0.87454 1.21423 0.97160 0.99300 0.96058 1.21301 1.00850 0.97203 0.95605 1.21862 0.96824 0.95178 1.00746 1.21305 0.94954 0.98491 1.00562 1.21245 0.98628 0.97864 0.96659 1.20863 0.98484 0.98467 0.97659 0.73093 0.88779 0.87822 0.88159 0.93541 0.89116 0.74832 0.93972 0.95576 0.90426 0.93724 0.93828 0.93166 0.94044 0.94804 0.92014 0.92436 0.90732 0.92486 0.91000 0.93935 0.91095 0.91582 0.94608 0.94206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 19.25 74.32 1.43 -1.67 16 2 C -0.24 -5.34 13.73 31.12 0.43 -4.91 16 3 C 0.16 3.06 6.22 70.17 0.44 3.50 16 4 O -0.39 -10.90 9.48 -129.99 -1.23 -12.13 16 5 C 0.08 1.84 3.13 29.85 0.09 1.93 16 6 H 0.13 1.87 7.79 -2.39 -0.02 1.85 16 7 C -0.17 -3.13 9.48 71.98 0.68 -2.45 16 8 C 0.50 17.12 7.18 87.66 0.63 17.75 16 9 O -0.58 -26.69 16.51 15.97 0.26 -26.42 16 10 N -0.71 -22.71 5.52 -463.07 -2.55 -25.26 16 11 C 0.12 4.94 6.00 86.38 0.52 5.45 16 12 C 0.15 6.30 5.38 86.38 0.46 6.77 16 13 N -0.59 -27.63 2.28 -688.46 -1.57 -29.19 16 14 C -0.25 -13.13 8.43 84.03 0.71 -12.42 16 15 H 0.05 2.53 6.99 -2.91 -0.02 2.51 16 16 C -0.02 -1.29 4.96 84.86 0.42 -0.86 16 17 N -0.91 -49.53 11.45 21.65 0.25 -49.28 16 18 Si 0.94 44.42 29.61 68.60 2.03 46.45 16 19 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 20 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 C 0.18 6.95 2.13 43.14 0.09 7.04 16 23 C -0.10 -3.82 4.54 30.20 0.14 -3.68 16 24 C -0.11 -3.21 5.31 30.14 0.16 -3.05 16 25 C -0.11 -2.63 5.85 31.32 0.18 -2.45 16 26 C -0.12 -3.00 5.31 30.14 0.16 -2.84 16 27 C -0.11 -2.95 5.61 30.20 0.17 -2.78 16 28 C -0.12 -4.25 4.51 28.74 0.13 -4.12 16 29 H 0.25 2.45 7.80 -4.41 -0.03 2.42 16 30 H 0.09 1.35 8.08 -2.39 -0.02 1.33 16 31 H 0.10 1.29 7.87 -2.39 -0.02 1.27 16 32 H 0.10 1.25 7.87 -2.39 -0.02 1.23 16 33 H 0.05 1.11 8.14 -2.38 -0.02 1.10 16 34 H 0.09 1.46 7.92 -2.39 -0.02 1.44 16 35 H 0.41 10.31 8.25 -92.71 -0.77 9.55 16 36 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.03 1.26 8.14 -2.38 -0.02 1.24 16 38 H 0.08 3.77 5.50 -2.39 -0.01 3.76 16 39 H 0.04 1.74 7.87 -2.39 -0.02 1.73 16 40 H 0.25 13.42 8.32 -92.70 -0.77 12.65 16 41 H 0.05 1.87 7.06 -2.39 -0.02 1.86 16 42 H 0.04 1.69 6.98 -2.38 -0.02 1.67 16 43 H 0.03 1.50 8.13 -2.39 -0.02 1.48 16 44 H 0.06 1.67 6.63 -2.39 -0.02 1.66 16 45 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 46 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.07 1.54 8.14 -2.39 -0.02 1.53 16 49 H 0.04 1.28 6.63 -2.39 -0.02 1.26 16 50 H 0.07 1.83 6.98 -2.39 -0.02 1.81 16 51 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 52 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 53 H 0.04 1.63 6.36 -2.39 -0.02 1.61 16 Total: -1.00 -73.13 419.49 4.14 -68.99 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.11 Total: 25.63 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 6.84 Total: 1.22 kcal Atomic # 7 Polarization: -99.87 SS G_CDS: -3.88 Total: -103.74 kcal Atomic # 8 Polarization: -37.58 SS G_CDS: -0.97 Total: -38.55 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -73.13 4.14 -68.99 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499517956.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.679 kcal (2) G-P(sol) polarization free energy of solvation -73.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds