Wall clock time and date at job start Tue Mar 31 2020 19:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47129 * 2 1 4 4 N 1.46495 * 109.47369 * 239.99802 * 2 1 3 5 5 C 1.36938 * 119.99989 * 84.99918 * 4 2 1 6 6 H 1.08000 * 119.99794 * 0.02562 * 5 4 2 7 7 C 1.38808 * 120.00112 * 180.02562 * 5 4 2 8 8 N 1.31623 * 120.00038 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00138 * 180.02562 * 7 5 4 10 10 H 1.48505 * 109.47507 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47224 * 120.00198 * 9 7 5 12 12 H 1.48497 * 109.47488 * 240.00392 * 9 7 5 13 13 C 1.53004 * 109.47154 * 119.99794 * 2 1 3 14 14 H 1.08992 * 109.51456 * 175.09793 * 13 2 1 15 15 C 1.53713 * 109.48461 * 295.36646 * 13 2 1 16 16 N 1.47151 * 108.15922 * 172.39514 * 15 13 2 17 17 C 1.34779 * 120.98076 * 129.43174 * 16 15 13 18 18 O 1.21283 * 120.00186 * 184.32772 * 17 16 15 19 19 C 1.50701 * 120.00042 * 4.32399 * 17 16 15 20 20 C 1.52942 * 109.41695 * 202.55197 * 19 17 16 21 21 C 1.53177 * 109.45211 * 176.97716 * 20 19 17 22 22 C 1.53155 * 108.88204 * 56.57262 * 21 20 19 23 23 C 1.52843 * 117.67650 * 91.49069 * 22 21 20 24 24 C 1.52906 * 117.76856 * 160.35969 * 22 21 20 25 25 C 1.53150 * 115.00702 * 306.06103 * 22 21 20 26 26 C 1.52947 * 109.35255 * 82.22917 * 19 17 16 27 27 C 1.47150 * 118.03886 * 309.15661 * 16 15 13 28 28 C 1.53286 * 108.38390 * 50.78538 * 27 16 15 29 29 O 1.42964 * 109.22723 * 307.69949 * 28 27 16 30 30 H 1.08997 * 109.47129 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46949 * 300.00450 * 1 2 3 32 32 H 1.09002 * 109.46889 * 59.99981 * 1 2 3 33 33 H 0.97005 * 120.00500 * 265.00482 * 4 2 1 34 34 H 0.96999 * 119.99837 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.83911 * 52.71307 * 15 13 2 36 36 H 1.08999 * 109.74260 * 292.02029 * 15 13 2 37 37 H 1.09005 * 109.41628 * 322.41325 * 19 17 16 38 38 H 1.09001 * 109.47296 * 56.98456 * 20 19 17 39 39 H 1.09000 * 109.47576 * 296.97183 * 20 19 17 40 40 H 1.09000 * 109.56869 * 296.75706 * 21 20 19 41 41 H 1.09001 * 109.66810 * 176.45144 * 21 20 19 42 42 H 1.08997 * 117.50701 * 0.27914 * 23 22 21 43 43 H 1.08997 * 117.50364 * 215.24687 * 23 22 21 44 44 H 1.08997 * 117.49392 * 144.91168 * 24 22 21 45 45 H 1.09004 * 117.54428 * 359.83695 * 24 22 21 46 46 H 1.08997 * 109.57183 * 173.75321 * 25 22 21 47 47 H 1.09003 * 109.56605 * 294.11812 * 25 22 21 48 48 H 1.08994 * 109.47679 * 303.04957 * 26 19 17 49 49 H 1.08996 * 109.47163 * 63.06240 * 26 19 17 50 50 H 1.09001 * 109.68341 * 170.51542 * 27 16 15 51 51 H 1.09005 * 109.67849 * 291.06353 * 27 16 15 52 52 H 1.08997 * 109.51717 * 67.62459 * 28 27 16 53 53 H 1.08999 * 109.51303 * 187.72473 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8927 1.0405 -2.4241 7 6 2.6114 -0.6620 -3.5092 8 7 2.9235 -1.9393 -3.4503 9 14 2.7905 0.2700 -5.1181 10 1 2.3777 1.6827 -4.9205 11 1 4.2074 0.2261 -5.5605 12 1 1.9294 -0.3577 -6.1523 13 6 2.0400 -0.7212 1.2493 14 1 3.1264 -0.7983 1.2072 15 6 1.6256 0.0676 2.5018 16 7 1.9666 -0.7382 3.6849 17 6 2.6700 -0.2089 4.7055 18 8 3.0089 -0.9092 5.6360 19 6 3.0355 1.2530 4.6906 20 6 4.2468 1.4835 5.5954 21 6 4.6655 2.9551 5.5222 22 6 3.4693 3.8306 5.9073 23 6 3.3189 4.2204 7.3775 24 6 3.7507 5.2674 6.3481 25 6 2.1905 3.5680 5.1065 26 6 1.8489 2.0773 5.1925 27 6 1.5116 -2.1370 3.7236 28 6 1.9268 -2.8169 2.4140 29 8 1.4704 -2.0311 1.3104 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 2.2490 -1.6318 -1.1526 34 1 3.2469 -2.3966 -4.2423 35 1 0.5521 0.2553 2.4824 36 1 2.1639 1.0148 2.5352 37 1 3.2812 1.5547 3.6724 38 1 5.0727 0.8538 5.2645 39 1 3.9861 1.2306 6.6231 40 1 4.9814 3.1947 4.5069 41 1 5.4886 3.1372 6.2132 42 1 4.0747 3.8579 8.0742 43 1 2.3078 4.2950 7.7775 44 1 3.0234 6.0304 6.0708 45 1 4.7904 5.5941 6.3682 46 1 1.3719 4.1547 5.5232 47 1 2.3485 3.8468 4.0646 48 1 0.9747 1.8686 4.5759 49 1 1.6348 1.8127 6.2280 50 1 1.9742 -2.6504 4.5666 51 1 0.4267 -2.1675 3.8252 52 1 3.0129 -2.9015 2.3761 53 1 1.4822 -3.8107 2.3629 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506840934.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:29 Heat of formation + Delta-G solvation = -73.373717 kcal Electronic energy + Delta-G solvation = -30777.927150 eV Core-core repulsion = 26842.239220 eV Total energy + Delta-G solvation = -3935.687930 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.79398 -40.28944 -39.33298 -37.02053 -35.94730 -35.53612 -34.25943 -31.98706 -31.82870 -30.29453 -29.03103 -28.07923 -26.37692 -24.98442 -24.16474 -23.82091 -23.24393 -22.26967 -21.13537 -20.17553 -19.55902 -19.24727 -18.32076 -17.67194 -16.97879 -16.72558 -16.55840 -16.20938 -16.12142 -15.94333 -15.72916 -15.36389 -15.01963 -14.72523 -14.57793 -14.36712 -14.20132 -13.96259 -13.79691 -13.51305 -13.25783 -13.20677 -12.99991 -12.96029 -12.84534 -12.73821 -12.42772 -12.38848 -12.32774 -12.10370 -11.97909 -11.87893 -11.66605 -11.60560 -11.47593 -11.17154 -11.10259 -10.98092 -10.90802 -10.66104 -10.37111 -9.59410 -8.96853 -7.88991 -5.17347 1.49935 1.50502 1.51263 1.60542 1.81593 2.59502 2.78979 2.90080 3.38336 3.45467 3.58336 3.62891 3.72597 3.85553 3.94397 4.00936 4.05230 4.07699 4.11840 4.16020 4.18570 4.27405 4.35599 4.38006 4.43334 4.53638 4.55063 4.62133 4.66457 4.77252 4.81474 4.82009 4.85656 4.90380 4.96073 5.00190 5.01062 5.07849 5.10752 5.15573 5.22482 5.25350 5.30200 5.33197 5.33884 5.45781 5.48715 5.56467 5.69042 6.24917 6.26701 6.33056 7.04836 7.38796 8.16046 8.38602 9.34972 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.012468 B = 0.002944 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.155477 B = 9508.313876 C =10893.656757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.177 3.823 3 H 0.072 0.928 4 N -0.735 5.735 5 C -0.231 4.231 6 H 0.082 0.918 7 C -0.081 4.081 8 N -0.972 5.972 9 Si 0.970 3.030 10 H -0.261 1.261 11 H -0.297 1.297 12 H -0.298 1.298 13 C 0.081 3.919 14 H 0.043 0.957 15 C 0.086 3.914 16 N -0.613 5.613 17 C 0.519 3.481 18 O -0.581 6.581 19 C -0.102 4.102 20 C -0.093 4.093 21 C -0.077 4.077 22 C -0.132 4.132 23 C -0.179 4.179 24 C -0.170 4.170 25 C -0.076 4.076 26 C -0.098 4.098 27 C 0.081 3.919 28 C 0.047 3.953 29 O -0.382 6.382 30 H 0.038 0.962 31 H 0.077 0.923 32 H 0.037 0.963 33 H 0.373 0.627 34 H 0.248 0.752 35 H 0.100 0.900 36 H 0.117 0.883 37 H 0.107 0.893 38 H 0.053 0.947 39 H 0.059 0.941 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.096 0.904 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.078 0.922 49 H 0.059 0.941 50 H 0.093 0.907 51 H 0.089 0.911 52 H 0.040 0.960 53 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.284 12.265 22.246 25.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.069 3.931 3 H 0.090 0.910 4 N -0.375 5.375 5 C -0.363 4.363 6 H 0.100 0.900 7 C -0.273 4.273 8 N -0.624 5.624 9 Si 0.800 3.200 10 H -0.185 1.185 11 H -0.225 1.225 12 H -0.226 1.226 13 C 0.021 3.979 14 H 0.061 0.939 15 C -0.037 4.037 16 N -0.346 5.346 17 C 0.309 3.691 18 O -0.460 6.460 19 C -0.123 4.123 20 C -0.131 4.131 21 C -0.115 4.115 22 C -0.132 4.132 23 C -0.216 4.216 24 C -0.206 4.206 25 C -0.113 4.113 26 C -0.135 4.135 27 C -0.042 4.042 28 C -0.030 4.030 29 O -0.301 6.301 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.056 0.944 33 H 0.204 0.796 34 H 0.057 0.943 35 H 0.118 0.882 36 H 0.135 0.865 37 H 0.124 0.876 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.108 0.892 43 H 0.114 0.886 44 H 0.119 0.881 45 H 0.114 0.886 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.096 0.904 49 H 0.078 0.922 50 H 0.112 0.888 51 H 0.107 0.893 52 H 0.058 0.942 53 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.247 11.992 22.493 25.589 hybrid contribution 0.603 -0.660 -0.943 1.300 sum -1.644 11.331 21.549 24.403 Atomic orbital electron populations 1.22250 0.97121 1.00906 1.00796 1.20482 0.93690 0.94889 0.84070 0.90995 1.42606 1.78203 1.10481 1.06221 1.19711 1.34198 0.94292 0.88132 0.89972 1.25558 1.03395 0.96824 1.01498 1.69858 1.52979 1.10374 1.29141 0.85112 0.76531 0.78431 0.79950 1.18496 1.22466 1.22606 1.22830 0.96261 0.83691 0.95069 0.93925 1.22741 1.03410 0.95020 0.82502 1.48289 1.54543 1.12734 1.19025 1.21260 0.76039 0.91020 0.80794 1.90646 1.55265 1.63566 1.36572 1.21396 0.98493 0.89540 1.02861 1.21275 0.95641 0.96857 0.99294 1.21128 0.95781 0.92279 1.02264 1.21547 0.97345 0.97173 0.97091 1.23062 1.02743 1.03921 0.91880 1.23057 1.02689 0.91693 1.03203 1.21140 0.95087 0.94470 1.00606 1.21412 0.95669 0.94948 1.01515 1.22297 1.00973 0.81973 0.98957 1.23029 0.98896 0.95823 0.85278 1.88061 1.67933 1.26136 1.47935 0.94264 0.90470 0.94416 0.79564 0.94342 0.88168 0.86479 0.87561 0.92802 0.92261 0.90778 0.91103 0.89193 0.88622 0.88076 0.88576 0.90321 0.90211 0.90357 0.92226 0.88830 0.89295 0.94163 0.86131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.93 9.06 71.98 0.65 -4.28 16 2 C 0.18 6.39 2.77 44.99 0.12 6.51 16 3 H 0.07 2.40 8.08 -2.39 -0.02 2.39 16 4 N -0.74 -36.27 5.10 -322.95 -1.65 -37.92 16 5 C -0.23 -12.46 9.93 84.03 0.83 -11.62 16 6 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 7 C -0.08 -4.61 5.50 84.86 0.47 -4.15 16 8 N -0.97 -60.05 13.06 21.65 0.28 -59.77 16 9 Si 0.97 45.66 29.55 68.60 2.03 47.69 16 10 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 11 H -0.30 -14.09 7.11 99.48 0.71 -13.38 16 12 H -0.30 -14.23 7.11 99.48 0.71 -13.53 16 13 C 0.08 2.50 2.62 30.84 0.08 2.58 16 14 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 15 C 0.09 1.88 5.36 86.50 0.46 2.34 16 16 N -0.61 -14.58 3.01 -816.55 -2.46 -17.04 16 17 C 0.52 13.08 6.83 87.66 0.60 13.68 16 18 O -0.58 -18.72 15.59 -3.04 -0.05 -18.76 16 19 C -0.10 -1.90 1.66 -11.58 -0.02 -1.92 16 20 C -0.09 -1.78 4.65 30.63 0.14 -1.64 16 21 C -0.08 -1.15 5.67 30.71 0.17 -0.97 16 22 C -0.13 -1.75 1.98 -52.16 -0.10 -1.86 16 23 C -0.18 -2.29 9.92 30.56 0.30 -1.99 16 24 C -0.17 -1.96 10.00 30.58 0.31 -1.66 16 25 C -0.08 -0.92 5.67 30.71 0.17 -0.75 16 26 C -0.10 -1.46 5.17 30.64 0.16 -1.30 16 27 C 0.08 1.90 6.65 86.35 0.57 2.47 16 28 C 0.05 1.25 6.98 72.08 0.50 1.75 16 29 O -0.38 -12.71 9.24 -148.98 -1.38 -14.08 16 30 H 0.04 1.42 7.56 -2.39 -0.02 1.40 16 31 H 0.08 1.85 6.42 -2.39 -0.02 1.83 16 32 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.37 20.61 7.58 -92.70 -0.70 19.91 16 34 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.10 1.92 6.28 -2.39 -0.01 1.91 16 36 H 0.12 2.03 5.52 -2.39 -0.01 2.01 16 37 H 0.11 1.76 6.19 -2.38 -0.01 1.74 16 38 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 1.30 7.98 -2.39 -0.02 1.28 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 0.99 8.10 -2.39 -0.02 0.97 16 42 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.10 1.05 8.14 -2.38 -0.02 1.03 16 46 H 0.08 0.82 8.09 -2.39 -0.02 0.80 16 47 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.08 1.05 7.80 -2.39 -0.02 1.03 16 49 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.09 2.30 7.07 -2.39 -0.02 2.28 16 51 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 52 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 53 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 Total: -1.00 -70.00 405.95 2.39 -67.61 By element: Atomic # 1 Polarization: 34.91 SS G_CDS: 0.18 Total: 35.09 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 5.43 Total: -2.81 kcal Atomic # 7 Polarization: -110.91 SS G_CDS: -3.83 Total: -114.73 kcal Atomic # 8 Polarization: -31.42 SS G_CDS: -1.42 Total: -32.85 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -70.00 2.39 -67.61 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506840934.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.764 kcal (2) G-P(sol) polarization free energy of solvation -70.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds