Wall clock time and date at job start Tue Mar 31 2020 19:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46940 * 2 1 4 4 N 1.46510 * 109.47330 * 120.00164 * 2 1 3 5 5 C 1.36936 * 119.99816 * 275.00116 * 4 2 1 6 6 H 1.08010 * 120.00095 * 359.97438 * 5 4 2 7 7 C 1.38806 * 120.00094 * 179.97438 * 5 4 2 8 8 N 1.31621 * 120.00197 * 179.97438 * 7 5 4 9 9 Si 1.86798 * 119.99773 * 0.02562 * 7 5 4 10 10 H 1.48501 * 109.47185 * 90.00173 * 9 7 5 11 11 H 1.48503 * 109.47162 * 209.99531 * 9 7 5 12 12 H 1.48501 * 109.47351 * 329.99910 * 9 7 5 13 13 C 1.52995 * 109.47084 * 239.99878 * 2 1 3 14 14 H 1.09001 * 109.51313 * 64.89783 * 13 2 1 15 15 C 1.53296 * 109.51480 * 184.99807 * 13 2 1 16 16 N 1.47152 * 108.38752 * 172.22752 * 15 13 2 17 17 C 1.34782 * 120.98139 * 129.44542 * 16 15 13 18 18 O 1.21273 * 119.99910 * 4.82148 * 17 16 15 19 19 C 1.50698 * 119.99740 * 184.82371 * 17 16 15 20 20 C 1.52949 * 109.41575 * 84.85012 * 19 17 16 21 21 C 1.53177 * 109.44968 * 183.02125 * 20 19 17 22 22 C 1.53153 * 108.88287 * 303.43025 * 21 20 19 23 23 C 1.52806 * 117.75099 * 199.62431 * 22 21 20 24 24 C 1.52928 * 117.69310 * 268.48586 * 22 21 20 25 25 C 1.53155 * 115.00814 * 53.93981 * 22 21 20 26 26 C 1.52939 * 109.35426 * 205.17285 * 19 17 16 27 27 C 1.47148 * 118.03506 * 309.71451 * 16 15 13 28 28 C 1.52886 * 108.60725 * 50.22844 * 27 16 15 29 29 O 1.42958 * 109.51451 * 304.74689 * 13 2 1 30 30 H 1.09004 * 109.46940 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47229 * 299.99719 * 1 2 3 32 32 H 1.08993 * 109.47460 * 60.00266 * 1 2 3 33 33 H 0.96992 * 120.00224 * 94.99775 * 4 2 1 34 34 H 0.97000 * 120.00162 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.68039 * 52.50551 * 15 13 2 36 36 H 1.08996 * 109.68299 * 291.95410 * 15 13 2 37 37 H 1.08998 * 109.41213 * 324.99391 * 19 17 16 38 38 H 1.08999 * 109.47064 * 63.02754 * 20 19 17 39 39 H 1.09003 * 109.47097 * 303.01640 * 20 19 17 40 40 H 1.08991 * 109.57181 * 183.60529 * 21 20 19 41 41 H 1.09009 * 109.66625 * 63.30500 * 21 20 19 42 42 H 1.09007 * 117.49797 * 0.14691 * 23 22 21 43 43 H 1.08994 * 117.50725 * 215.13507 * 23 22 21 44 44 H 1.09007 * 117.49189 * 144.79568 * 24 22 21 45 45 H 1.08993 * 117.54546 * 359.71984 * 24 22 21 46 46 H 1.08995 * 109.56758 * 65.88550 * 25 22 21 47 47 H 1.08999 * 109.56549 * 186.24504 * 25 22 21 48 48 H 1.09000 * 109.47279 * 296.93873 * 26 19 17 49 49 H 1.09002 * 109.47264 * 56.94717 * 26 19 17 50 50 H 1.09004 * 109.68095 * 170.00457 * 27 16 15 51 51 H 1.08997 * 109.68554 * 290.56455 * 27 16 15 52 52 H 1.08993 * 109.58432 * 187.91778 * 28 27 16 53 53 H 1.09000 * 109.40710 * 67.83979 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 2.1491 -0.0076 2.3758 6 1 1.8926 1.0405 2.4242 7 6 2.6114 -0.6620 3.5093 8 7 2.7375 -0.0053 4.6429 9 14 3.0557 -2.4744 3.4253 10 1 4.4886 -2.6165 3.0621 11 1 2.8157 -3.1047 4.7484 12 1 2.2162 -3.1429 2.3989 13 6 2.0399 -0.7213 -1.2492 14 1 1.7504 -0.1598 -2.1375 15 6 3.5677 -0.8318 -1.1888 16 7 4.0154 -1.6875 -2.2991 17 6 4.9960 -1.2866 -3.1323 18 8 5.5830 -0.2465 -2.9218 19 6 5.3628 -2.1307 -4.3256 20 6 4.4307 -1.7958 -5.4911 21 6 4.7534 -2.7060 -6.6801 22 6 6.2320 -2.5408 -7.0438 23 6 6.6740 -2.9753 -8.4405 24 6 6.5925 -1.4875 -8.0922 25 6 7.2115 -2.7570 -5.8864 26 6 6.8120 -1.8453 -4.7221 27 6 3.3568 -2.9914 -2.4763 28 6 1.8429 -2.7780 -2.4707 29 8 1.4750 -2.0332 -1.3072 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8899 33 1 2.2490 -1.6318 1.1527 34 1 3.0602 -0.4627 5.4351 35 1 3.8664 -1.2761 -0.2394 36 1 4.0116 0.1589 -1.2869 37 1 5.2581 -3.1850 -4.0695 38 1 4.5717 -0.7548 -5.7816 39 1 3.3960 -1.9509 -5.1850 40 1 4.1343 -2.4266 -7.5325 41 1 4.5574 -3.7441 -6.4112 42 1 5.9115 -3.3787 -9.1069 43 1 7.6661 -3.4154 -8.5403 44 1 7.5313 -0.9488 -7.9621 45 1 5.7769 -0.9119 -8.5297 46 1 7.1728 -3.7978 -5.5650 47 1 8.2220 -2.5111 -6.2127 48 1 6.9067 -0.8032 -5.0275 49 1 7.4658 -2.0354 -3.8709 50 1 3.6610 -3.4302 -3.4266 51 1 3.6338 -3.6568 -1.6587 52 1 1.3379 -3.7438 -2.4596 53 1 1.5518 -2.2252 -3.3639 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506840938.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:41 Heat of formation + Delta-G solvation = -70.779259 kcal Electronic energy + Delta-G solvation = -30934.653105 eV Core-core repulsion = 26999.077679 eV Total energy + Delta-G solvation = -3935.575426 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.81126 -40.33972 -39.33749 -37.27431 -35.91241 -35.59574 -34.22648 -32.09343 -31.88410 -30.58338 -29.67283 -28.22007 -25.75229 -24.94516 -24.04247 -23.82276 -23.27382 -22.39608 -21.32509 -20.22006 -19.77818 -19.50004 -18.35239 -17.69250 -17.13114 -16.70599 -16.44167 -16.22954 -16.18261 -15.92281 -15.78417 -15.30404 -15.03597 -14.81240 -14.60651 -14.38038 -14.32987 -14.19678 -13.78869 -13.62505 -13.44002 -13.25731 -13.09645 -12.93379 -12.86694 -12.73783 -12.57027 -12.48807 -12.33599 -12.07774 -11.98872 -11.82943 -11.78600 -11.70171 -11.57269 -11.19564 -11.09703 -11.00747 -10.97848 -10.66117 -10.38213 -9.65046 -9.27313 -8.01225 -5.32950 1.35915 1.38100 1.46349 1.51621 1.80457 2.48345 2.74860 2.88845 3.31467 3.39523 3.53271 3.61251 3.72068 3.76335 3.90824 3.92002 3.98617 4.06983 4.10670 4.11888 4.17202 4.20112 4.29941 4.36187 4.42154 4.50864 4.53409 4.61618 4.73993 4.77696 4.78858 4.84023 4.85436 4.89495 4.94132 4.96535 5.00936 5.02965 5.07574 5.10206 5.19502 5.21703 5.24631 5.31171 5.32704 5.44392 5.48372 5.57486 5.78454 6.18980 6.26483 6.32137 7.07050 7.09423 7.85461 8.05862 9.20525 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019475 B = 0.002813 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.374531 B = 9951.872210 C =10395.387662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.177 3.823 3 H 0.058 0.942 4 N -0.743 5.743 5 C -0.221 4.221 6 H 0.059 0.941 7 C -0.065 4.065 8 N -0.985 5.985 9 Si 0.948 3.052 10 H -0.284 1.284 11 H -0.296 1.296 12 H -0.251 1.251 13 C 0.094 3.906 14 H 0.082 0.918 15 C 0.089 3.911 16 N -0.614 5.614 17 C 0.511 3.489 18 O -0.587 6.587 19 C -0.093 4.093 20 C -0.099 4.099 21 C -0.072 4.072 22 C -0.131 4.131 23 C -0.164 4.164 24 C -0.187 4.187 25 C -0.074 4.074 26 C -0.097 4.097 27 C 0.063 3.937 28 C 0.041 3.959 29 O -0.384 6.384 30 H 0.054 0.946 31 H 0.033 0.967 32 H 0.070 0.930 33 H 0.367 0.633 34 H 0.256 0.744 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.051 0.949 39 H 0.081 0.919 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.067 0.933 48 H 0.051 0.949 49 H 0.052 0.948 50 H 0.133 0.867 51 H 0.075 0.925 52 H 0.133 0.867 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.110 -12.474 -31.461 33.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.068 3.932 3 H 0.076 0.924 4 N -0.387 5.387 5 C -0.352 4.352 6 H 0.077 0.923 7 C -0.256 4.256 8 N -0.636 5.636 9 Si 0.777 3.223 10 H -0.211 1.211 11 H -0.223 1.223 12 H -0.175 1.175 13 C 0.035 3.965 14 H 0.100 0.900 15 C -0.034 4.034 16 N -0.347 5.347 17 C 0.302 3.698 18 O -0.467 6.467 19 C -0.114 4.114 20 C -0.137 4.137 21 C -0.109 4.109 22 C -0.131 4.131 23 C -0.201 4.201 24 C -0.224 4.224 25 C -0.111 4.111 26 C -0.135 4.135 27 C -0.058 4.058 28 C -0.036 4.036 29 O -0.303 6.303 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.201 0.799 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.094 0.906 37 H 0.136 0.864 38 H 0.070 0.930 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.107 0.893 42 H 0.122 0.878 43 H 0.115 0.885 44 H 0.104 0.896 45 H 0.112 0.888 46 H 0.101 0.899 47 H 0.086 0.914 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.151 0.849 51 H 0.093 0.907 52 H 0.151 0.849 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.291 -11.830 -31.080 33.418 hybrid contribution 0.744 -0.172 0.961 1.227 sum 4.035 -12.002 -30.119 32.672 Atomic orbital electron populations 1.22120 0.96359 1.01659 1.00595 1.20475 0.94019 0.94635 0.84032 0.92398 1.42708 1.79712 1.09557 1.06719 1.19039 1.34485 0.94366 0.87358 0.92304 1.25417 1.02715 1.02175 0.95276 1.69876 1.55037 1.37540 1.01123 0.85491 0.78290 0.81539 0.77030 1.21080 1.22303 1.17536 1.22567 0.90479 0.85012 0.98448 0.90049 1.22068 0.95680 0.96190 0.89494 1.48360 1.37101 1.19747 1.29458 1.21548 0.78068 0.86155 0.84074 1.90676 1.53325 1.27545 1.75190 1.21365 0.97747 1.00443 0.91883 1.21443 0.98380 1.00330 0.93567 1.21128 0.92427 1.00289 0.97070 1.21576 0.96367 1.04662 0.90473 1.23035 1.03139 0.96736 0.97219 1.23075 1.03014 0.92520 1.03810 1.21116 0.97525 0.99786 0.92706 1.21311 0.93678 1.00229 0.98277 1.22753 0.94194 0.83671 1.05207 1.23192 0.93469 0.98480 0.88438 1.88039 1.71142 1.26757 1.44366 0.92643 0.94737 0.91157 0.79906 0.93511 0.92325 0.90571 0.86363 0.93009 0.90046 0.90426 0.89286 0.87822 0.88527 0.89601 0.88816 0.89940 0.91439 0.93029 0.92910 0.84938 0.90704 0.84919 0.91140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.09 9.30 71.98 0.67 -4.42 16 2 C 0.18 6.71 2.80 44.99 0.13 6.84 16 3 H 0.06 2.31 8.08 -2.39 -0.02 2.29 16 4 N -0.74 -34.99 4.05 -322.93 -1.31 -36.30 16 5 C -0.22 -12.76 10.41 84.03 0.87 -11.88 16 6 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 7 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16 8 N -0.98 -64.46 13.97 21.65 0.30 -64.16 16 9 Si 0.95 46.96 27.74 68.60 1.90 48.86 16 10 H -0.28 -13.89 7.11 99.48 0.71 -13.19 16 11 H -0.30 -14.79 7.11 99.48 0.71 -14.09 16 12 H -0.25 -11.33 6.52 99.48 0.65 -10.68 16 13 C 0.09 2.87 2.57 30.69 0.08 2.95 16 14 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 15 C 0.09 2.99 5.81 86.35 0.50 3.50 16 16 N -0.61 -15.88 3.03 -818.15 -2.48 -18.35 16 17 C 0.51 13.84 6.81 87.66 0.60 14.44 16 18 O -0.59 -21.82 15.64 -3.01 -0.05 -21.87 16 19 C -0.09 -1.59 1.61 -11.58 -0.02 -1.60 16 20 C -0.10 -1.31 5.04 30.64 0.15 -1.15 16 21 C -0.07 -0.64 5.67 30.70 0.17 -0.47 16 22 C -0.13 -1.45 1.98 -52.17 -0.10 -1.56 16 23 C -0.16 -1.53 9.99 30.54 0.30 -1.23 16 24 C -0.19 -2.27 9.93 30.58 0.30 -1.97 16 25 C -0.07 -0.94 5.67 30.70 0.17 -0.76 16 26 C -0.10 -1.81 4.68 30.63 0.14 -1.66 16 27 C 0.06 1.07 6.42 86.22 0.55 1.62 16 28 C 0.04 0.69 6.97 71.94 0.50 1.19 16 29 O -0.38 -10.66 9.24 -148.98 -1.38 -12.04 16 30 H 0.05 1.91 7.57 -2.39 -0.02 1.90 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.37 17.06 4.94 -92.71 -0.46 16.61 16 34 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 35 H 0.06 2.31 6.94 -2.39 -0.02 2.29 16 36 H 0.08 2.88 7.12 -2.39 -0.02 2.86 16 37 H 0.12 1.37 6.36 -2.39 -0.02 1.35 16 38 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 0.86 7.91 -2.39 -0.02 0.84 16 40 H 0.08 0.59 8.09 -2.39 -0.02 0.57 16 41 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 42 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 43 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 45 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 46 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 48 H 0.05 1.20 7.97 -2.39 -0.02 1.18 16 49 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 50 H 0.13 1.16 5.29 -2.38 -0.01 1.15 16 51 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 52 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 53 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -77.32 404.25 2.86 -74.46 By element: Atomic # 1 Polarization: 28.62 SS G_CDS: 0.36 Total: 28.99 kcal Atomic # 6 Polarization: -5.09 SS G_CDS: 5.50 Total: 0.41 kcal Atomic # 7 Polarization: -115.33 SS G_CDS: -3.48 Total: -118.81 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -1.42 Total: -33.91 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 1.90 Total: 48.86 kcal Total: -77.32 2.86 -74.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506840938.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.680 kcal (2) G-P(sol) polarization free energy of solvation -77.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds