Wall clock time and date at job start Tue Mar 31 2020 20:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.47431 * 2 1 4 4 O 1.42904 * 109.47090 * 120.00247 * 2 1 3 5 5 C 1.42899 * 113.99799 * 269.99812 * 4 2 1 6 6 C 1.52995 * 109.47325 * 179.97438 * 5 4 2 7 7 C 1.53001 * 117.50317 * 243.62069 * 6 5 4 8 8 C 1.53004 * 60.00094 * 252.51330 * 7 6 5 9 9 C 1.50707 * 109.46895 * 239.99611 * 2 1 3 10 10 O 1.21280 * 119.99965 * 245.00366 * 9 2 1 11 11 N 1.34773 * 119.99677 * 65.00447 * 9 2 1 12 12 C 1.48153 * 127.02766 * 359.97438 * 11 9 2 13 13 C 1.55042 * 103.31544 * 140.98454 * 12 11 9 14 14 C 1.54180 * 102.72009 * 37.01212 * 13 12 11 15 15 C 1.47617 * 127.01989 * 179.97438 * 11 9 2 16 16 C 1.52491 * 110.02166 * 219.30195 * 14 13 12 17 17 C 1.53126 * 109.59307 * 298.37394 * 16 14 13 18 18 C 1.53185 * 109.29293 * 299.51450 * 17 16 14 19 19 N 1.46924 * 108.89129 * 55.07104 * 18 17 16 20 20 C 1.36942 * 120.68303 * 125.94497 * 19 18 17 21 21 H 1.08002 * 119.99479 * 332.05912 * 20 19 18 22 22 C 1.38804 * 119.99920 * 152.05454 * 20 19 18 23 23 N 1.31620 * 120.00341 * 343.23567 * 22 20 19 24 24 Si 1.86803 * 119.99969 * 163.23682 * 22 20 19 25 25 H 1.48503 * 109.47228 * 59.99892 * 24 22 20 26 26 H 1.48498 * 109.46978 * 179.97438 * 24 22 20 27 27 H 1.48494 * 109.47277 * 299.99951 * 24 22 20 28 28 C 1.47028 * 118.63683 * 305.97324 * 19 18 17 29 29 H 1.08997 * 109.46903 * 59.99912 * 1 2 3 30 30 H 1.08997 * 109.46951 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46778 * 300.00379 * 1 2 3 32 32 H 1.09000 * 109.47236 * 300.00170 * 5 4 2 33 33 H 1.09007 * 109.47462 * 59.99536 * 5 4 2 34 34 H 1.08999 * 115.54971 * 29.33356 * 6 5 4 35 35 H 1.09003 * 117.49408 * 0.02562 * 7 6 5 36 36 H 1.08990 * 117.49949 * 145.02003 * 7 6 5 37 37 H 1.09004 * 117.49508 * 252.50943 * 8 7 6 38 38 H 1.08993 * 117.50107 * 107.49306 * 8 7 6 39 39 H 1.08997 * 110.65028 * 259.44441 * 12 11 9 40 40 H 1.09003 * 110.64955 * 22.36747 * 12 11 9 41 41 H 1.09002 * 110.76217 * 278.70575 * 13 12 11 42 42 H 1.08996 * 110.76259 * 155.32132 * 13 12 11 43 43 H 1.08993 * 109.97502 * 85.96313 * 15 11 9 44 44 H 1.09004 * 110.00423 * 324.70489 * 15 11 9 45 45 H 1.09002 * 109.44276 * 178.34490 * 16 14 13 46 46 H 1.08998 * 109.44619 * 58.40868 * 16 14 13 47 47 H 1.09004 * 109.49639 * 59.45385 * 17 16 14 48 48 H 1.08995 * 109.49924 * 179.56261 * 17 16 14 49 49 H 1.09000 * 109.56589 * 174.89486 * 18 17 16 50 50 H 1.09000 * 109.56906 * 295.24634 * 18 17 16 51 51 H 0.96998 * 120.00076 * 180.02562 * 23 22 20 52 52 H 1.09005 * 109.58288 * 172.58512 * 28 19 18 53 53 H 1.09002 * 109.58050 * 292.98717 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 1.1668 5 6 2.2002 0.1828 2.2941 6 6 2.7079 -0.6408 3.4792 7 6 1.8120 -0.7252 4.7165 8 6 3.0898 0.1155 4.7532 9 6 2.0324 -0.7105 -1.2305 10 8 2.6529 -1.7468 -1.1215 11 7 1.7919 -0.1943 -2.4520 12 6 1.0553 1.0526 -2.7644 13 6 1.8669 1.6627 -3.9361 14 6 2.2924 0.4173 -4.7392 15 6 2.2088 -0.7558 -3.7520 16 6 3.7210 0.5853 -5.2453 17 6 3.7950 1.7943 -6.1820 18 6 2.8635 1.5668 -7.3766 19 7 1.5108 1.2836 -6.8779 20 6 0.4387 2.0175 -7.3105 21 1 0.5784 3.0385 -7.6338 22 6 -0.8275 1.4492 -7.3336 23 7 -0.9635 0.1418 -7.2642 24 14 -2.3386 2.5397 -7.4633 25 1 -2.2752 3.3259 -8.7215 26 1 -3.5597 1.6948 -7.4690 27 1 -2.3820 3.4654 -6.3030 28 6 1.3320 0.1965 -5.9043 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 2.9320 0.9513 2.0450 33 1 1.2539 0.6547 2.5589 34 1 3.2955 -1.5221 3.2218 35 1 0.8605 -0.1943 4.6860 36 1 1.8098 -1.6622 5.2733 37 1 3.9283 -0.2685 5.3343 38 1 2.9792 1.1998 4.7472 39 1 0.0360 0.8284 -3.0785 40 1 1.0528 1.7232 -1.9050 41 1 2.7397 2.1990 -3.5636 42 1 1.2394 2.3169 -4.5414 43 1 1.4725 -1.4813 -4.0975 44 1 3.1845 -1.2324 -3.6567 45 1 4.0223 -0.3118 -5.7861 46 1 4.3900 0.7405 -4.3988 47 1 3.4851 2.6906 -5.6445 48 1 4.8182 1.9177 -6.5367 49 1 2.8432 2.4612 -7.9993 50 1 3.2213 0.7201 -7.9625 51 1 -1.8482 -0.2553 -7.2807 52 1 0.3055 0.1998 -5.5374 53 1 1.5488 -0.7597 -6.3805 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699697977.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:57 Heat of formation + Delta-G solvation = -48.891711 kcal Electronic energy + Delta-G solvation = -30659.610917 eV Core-core repulsion = 26724.984607 eV Total energy + Delta-G solvation = -3934.626311 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.61281 -40.20762 -39.06528 -37.51077 -37.20769 -34.91942 -33.38089 -32.03922 -31.59716 -30.47046 -28.07378 -27.38356 -27.14335 -25.03674 -23.94017 -23.68856 -23.23657 -22.16643 -21.74454 -20.43700 -19.62955 -18.56402 -18.38825 -17.62823 -17.10271 -16.98806 -16.63590 -16.23531 -16.03412 -15.72528 -15.41423 -15.22181 -15.05934 -14.91770 -14.55104 -14.34582 -14.11144 -13.93339 -13.71455 -13.42008 -13.37188 -13.16302 -13.11382 -12.88003 -12.70581 -12.60960 -12.45704 -12.38401 -12.31981 -12.15567 -11.99318 -11.81490 -11.64194 -11.43700 -11.34215 -11.30266 -11.17888 -10.99656 -10.80894 -10.47885 -10.42632 -9.77302 -8.61733 -7.81817 -5.26666 1.48642 1.51616 1.52492 1.59541 1.63081 2.55620 2.62609 2.96239 3.30127 3.36110 3.62723 3.72985 3.78463 3.86584 3.90972 3.95645 3.96978 4.01531 4.13148 4.26980 4.31674 4.32601 4.38128 4.46208 4.49285 4.59871 4.62681 4.65952 4.67777 4.74419 4.76434 4.77957 4.79958 4.94054 4.95706 5.01101 5.04861 5.14074 5.15123 5.20700 5.22570 5.24673 5.30431 5.36599 5.43274 5.52072 5.64780 5.70947 5.78615 6.10528 6.43901 6.50010 7.05731 7.20037 7.91231 8.44637 9.24294 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.016275 B = 0.002734 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.050708 B =10239.368442 C =11167.177098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.083 3.917 3 H 0.116 0.884 4 O -0.386 6.386 5 C 0.087 3.913 6 C -0.177 4.177 7 C -0.176 4.176 8 C -0.159 4.159 9 C 0.524 3.476 10 O -0.580 6.580 11 N -0.610 5.610 12 C 0.099 3.901 13 C -0.105 4.105 14 C -0.084 4.084 15 C 0.122 3.878 16 C -0.092 4.092 17 C -0.120 4.120 18 C 0.137 3.863 19 N -0.603 5.603 20 C -0.252 4.252 21 H 0.068 0.932 22 C -0.047 4.047 23 N -0.936 5.936 24 Si 0.960 3.040 25 H -0.281 1.281 26 H -0.301 1.301 27 H -0.270 1.270 28 C 0.201 3.799 29 H 0.084 0.916 30 H 0.051 0.949 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.114 0.886 41 H 0.084 0.916 42 H 0.079 0.921 43 H 0.048 0.952 44 H 0.067 0.933 45 H 0.048 0.952 46 H 0.069 0.931 47 H 0.066 0.934 48 H 0.078 0.922 49 H 0.054 0.946 50 H 0.005 0.995 51 H 0.248 0.752 52 H 0.061 0.939 53 H -0.017 1.017 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.095 6.319 20.255 22.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.022 3.978 3 H 0.133 0.867 4 O -0.305 6.305 5 C 0.011 3.989 6 C -0.196 4.196 7 C -0.213 4.213 8 C -0.195 4.195 9 C 0.314 3.686 10 O -0.459 6.459 11 N -0.344 5.344 12 C -0.023 4.023 13 C -0.143 4.143 14 C -0.086 4.086 15 C -0.001 4.001 16 C -0.130 4.130 17 C -0.158 4.158 18 C 0.012 3.988 19 N -0.326 5.326 20 C -0.383 4.383 21 H 0.086 0.914 22 C -0.242 4.242 23 N -0.582 5.582 24 Si 0.789 3.211 25 H -0.207 1.207 26 H -0.228 1.228 27 H -0.196 1.196 28 C 0.075 3.925 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.114 0.886 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.128 0.872 39 H 0.087 0.913 40 H 0.132 0.868 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.066 0.934 44 H 0.085 0.915 45 H 0.067 0.933 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.096 0.904 49 H 0.073 0.927 50 H 0.023 0.977 51 H 0.057 0.943 52 H 0.079 0.921 53 H 0.001 0.999 Dipole moment (debyes) X Y Z Total from point charges 6.329 5.459 20.395 22.041 hybrid contribution -1.036 -0.235 -0.859 1.366 sum 5.293 5.225 19.536 20.904 Atomic orbital electron populations 1.22285 0.91949 1.03333 1.05009 1.21847 0.96077 0.96509 0.83340 0.86675 1.88014 1.86837 1.35867 1.19747 1.22316 1.00339 0.91866 0.84330 1.22109 1.05554 1.02714 0.89192 1.23166 0.95576 1.02623 0.99901 1.23078 0.99149 0.99549 0.97761 1.20749 0.79060 0.84849 0.83984 1.90672 1.42941 1.25728 1.86570 1.48866 1.54750 1.26232 1.04538 1.22862 0.95527 0.84567 0.99324 1.22587 1.00193 0.96395 0.95165 1.21592 0.97507 0.94378 0.95127 1.21924 0.99656 0.96247 0.82278 1.21376 0.94228 0.98463 0.98918 1.21890 0.99264 0.97881 0.96797 1.21085 0.85379 0.97621 0.94728 1.44250 1.02771 1.38567 1.46972 1.19411 0.86883 0.93760 1.38210 0.91411 1.25714 1.00908 0.96164 1.01438 1.70185 1.22106 1.10109 1.55808 0.85454 0.79071 0.78135 0.78470 1.20697 1.22759 1.19571 1.20429 0.96975 0.87971 0.87092 0.89687 0.93021 0.88563 0.91764 0.90956 0.88895 0.87677 0.88453 0.87707 0.87161 0.91282 0.86789 0.89771 0.90236 0.93391 0.91488 0.93329 0.91289 0.91531 0.90374 0.92731 0.97662 0.94335 0.92089 0.99915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 9.34 71.98 0.67 -2.55 16 2 C 0.08 1.93 2.42 29.85 0.07 2.00 16 3 H 0.12 1.91 7.32 -2.39 -0.02 1.89 16 4 O -0.39 -10.18 9.53 -129.99 -1.24 -11.42 16 5 C 0.09 1.54 6.03 71.98 0.43 1.97 16 6 C -0.18 -3.09 6.06 -10.79 -0.07 -3.15 16 7 C -0.18 -2.33 10.18 30.60 0.31 -2.02 16 8 C -0.16 -1.86 10.25 30.60 0.31 -1.54 16 9 C 0.52 16.97 7.27 87.66 0.64 17.61 16 10 O -0.58 -24.33 16.85 15.96 0.27 -24.06 16 11 N -0.61 -18.66 3.30 -809.66 -2.67 -21.33 16 12 C 0.10 2.54 5.39 86.76 0.47 3.01 16 13 C -0.11 -3.10 5.00 31.69 0.16 -2.94 16 14 C -0.08 -2.88 0.63 -51.90 -0.03 -2.92 16 15 C 0.12 4.27 6.28 86.35 0.54 4.81 16 16 C -0.09 -2.85 4.34 30.47 0.13 -2.71 16 17 C -0.12 -3.62 5.89 30.70 0.18 -3.43 16 18 C 0.14 5.37 6.50 86.36 0.56 5.93 16 19 N -0.60 -28.19 2.50 -699.99 -1.75 -29.94 16 20 C -0.25 -12.93 9.58 84.03 0.81 -12.13 16 21 H 0.07 3.38 7.88 -2.91 -0.02 3.35 16 22 C -0.05 -2.48 4.92 84.86 0.42 -2.06 16 23 N -0.94 -53.52 11.19 21.65 0.24 -53.28 16 24 Si 0.96 42.55 29.59 68.60 2.03 44.58 16 25 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 26 H -0.30 -13.73 7.11 99.48 0.71 -13.02 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 28 C 0.20 9.13 3.64 86.14 0.31 9.45 16 29 H 0.08 1.51 5.91 -2.39 -0.01 1.50 16 30 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.10 1.30 7.87 -2.39 -0.02 1.28 16 32 H 0.06 0.97 8.08 -2.39 -0.02 0.95 16 33 H 0.07 0.95 7.60 -2.38 -0.02 0.93 16 34 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 35 H 0.10 1.18 8.03 -2.39 -0.02 1.16 16 36 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.10 1.07 8.14 -2.38 -0.02 1.06 16 38 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 1.96 8.03 -2.39 -0.02 1.94 16 40 H 0.11 1.99 6.66 -2.39 -0.02 1.98 16 41 H 0.08 2.11 7.63 -2.39 -0.02 2.09 16 42 H 0.08 2.75 7.48 -2.39 -0.02 2.73 16 43 H 0.05 1.86 7.67 -2.39 -0.02 1.84 16 44 H 0.07 2.37 7.60 -2.38 -0.02 2.35 16 45 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 47 H 0.07 1.96 7.13 -2.39 -0.02 1.94 16 48 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 49 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 50 H 0.01 0.22 8.14 -2.39 -0.02 0.20 16 51 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 52 H 0.06 3.12 6.09 -2.38 -0.01 3.10 16 53 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 Total: -1.00 -69.65 406.63 3.67 -65.98 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.87 Total: 20.16 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 5.92 Total: 9.30 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -4.18 Total: -104.54 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.97 Total: -35.48 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Total: -69.65 3.67 -65.98 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699697977.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.088 kcal (2) G-P(sol) polarization free energy of solvation -69.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds