Wall clock time and date at job start Tue Mar 31 2020 20:33:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.47282 * 2 1 4 4 O 1.42903 * 109.47159 * 240.00025 * 2 1 3 5 5 C 1.42899 * 113.99960 * 90.00369 * 4 2 1 6 6 C 1.52995 * 109.47329 * 179.97438 * 5 4 2 7 7 C 1.53002 * 117.50146 * 243.62257 * 6 5 4 8 8 C 1.52996 * 117.50324 * 174.99609 * 6 5 4 9 9 C 1.50702 * 109.47191 * 120.00173 * 2 1 3 10 10 O 1.21283 * 119.99954 * 103.90530 * 9 2 1 11 11 N 1.34777 * 119.99901 * 283.90630 * 9 2 1 12 12 C 1.47489 * 125.66286 * 4.01620 * 11 9 2 13 13 C 1.55281 * 104.77744 * 155.87910 * 12 11 9 14 14 C 1.54472 * 101.42156 * 36.67365 * 13 12 11 15 15 C 1.47185 * 125.66142 * 184.31305 * 11 9 2 16 16 C 1.52240 * 110.29068 * 206.45834 * 14 13 12 17 17 C 1.53170 * 109.64906 * 177.99908 * 16 14 13 18 18 C 1.53193 * 109.26936 * 60.18862 * 17 16 14 19 19 N 1.46927 * 108.92593 * 304.77122 * 18 17 16 20 20 C 1.36937 * 120.70407 * 234.14066 * 19 18 17 21 21 H 1.07994 * 120.00145 * 151.73205 * 20 19 18 22 22 C 1.38816 * 119.99548 * 331.72414 * 20 19 18 23 23 N 1.31623 * 119.99634 * 159.80388 * 22 20 19 24 24 Si 1.86792 * 120.00291 * 339.80973 * 22 20 19 25 25 H 1.48498 * 109.47143 * 95.08706 * 24 22 20 26 26 H 1.48509 * 109.47102 * 215.08508 * 24 22 20 27 27 H 1.48499 * 109.47160 * 335.08210 * 24 22 20 28 28 C 1.47084 * 118.59922 * 54.16142 * 19 18 17 29 29 H 1.09002 * 109.46917 * 174.68603 * 1 2 3 30 30 H 1.08998 * 109.47125 * 294.68961 * 1 2 3 31 31 H 1.09005 * 109.47027 * 54.68315 * 1 2 3 32 32 H 1.09002 * 109.46910 * 299.99906 * 5 4 2 33 33 H 1.09000 * 109.47112 * 59.99408 * 5 4 2 34 34 H 1.09006 * 115.54884 * 29.32361 * 6 5 4 35 35 H 1.09001 * 117.49453 * 359.97438 * 7 6 5 36 36 H 1.09002 * 117.49965 * 145.01736 * 7 6 5 37 37 H 1.09002 * 117.50273 * 214.97890 * 8 6 5 38 38 H 1.09004 * 117.49392 * 0.02562 * 8 6 5 39 39 H 1.09001 * 110.34825 * 274.84534 * 12 11 9 40 40 H 1.08996 * 110.35019 * 37.12535 * 12 11 9 41 41 H 1.08999 * 111.23549 * 278.57151 * 13 12 11 42 42 H 1.09007 * 110.89609 * 154.62441 * 13 12 11 43 43 H 1.08992 * 109.91393 * 300.90627 * 15 11 9 44 44 H 1.09000 * 109.90801 * 61.98800 * 15 11 9 45 45 H 1.08991 * 109.44448 * 298.05421 * 16 14 13 46 46 H 1.09000 * 109.43785 * 57.99014 * 16 14 13 47 47 H 1.09000 * 109.50643 * 180.12229 * 17 16 14 48 48 H 1.09002 * 109.50996 * 300.24655 * 17 16 14 49 49 H 1.08991 * 109.56384 * 64.60771 * 18 17 16 50 50 H 1.09006 * 109.55894 * 184.94623 * 18 17 16 51 51 H 0.97000 * 119.99619 * 179.97438 * 23 22 20 52 52 H 1.09000 * 109.57801 * 187.74769 * 28 19 18 53 53 H 1.08993 * 109.57721 * 67.34979 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.2001 0.1829 -2.2941 6 6 2.7091 -0.6405 -3.4788 7 6 4.1061 -0.3196 -4.0140 8 6 2.8681 0.0763 -4.8211 9 6 2.0323 -0.7104 1.2304 10 8 2.4724 -1.8372 1.1429 11 7 1.9925 -0.0937 2.4282 12 6 1.4097 1.2352 2.6920 13 6 1.0490 1.2167 4.2023 14 6 2.2214 0.3981 4.7868 15 6 2.5288 -0.6319 3.6887 16 6 1.7915 -0.2965 6.0715 17 6 2.9483 -1.1429 6.6113 18 6 4.1466 -0.2341 6.9027 19 7 4.4820 0.5173 5.6855 20 6 5.7519 0.4890 5.1739 21 1 5.9104 0.6261 4.1145 22 6 6.8354 0.2842 6.0171 23 7 7.9818 -0.1358 5.5254 24 14 6.6665 0.6045 7.8496 25 1 6.3393 -0.6656 8.5460 26 1 7.9455 1.1434 8.3779 27 1 5.5805 1.5904 8.0818 28 6 3.4250 1.3011 5.0283 29 1 -0.3633 -1.0233 -0.0952 30 1 -0.3633 0.4292 0.9337 31 1 -0.3633 0.5941 -0.8386 32 1 1.2538 0.6547 -2.5588 33 1 2.9320 0.9514 -2.0449 34 1 2.3890 -1.6823 -3.4994 35 1 4.6624 0.4784 -3.5222 36 1 4.7054 -1.1504 -4.3867 37 1 2.6529 -0.4939 -5.7248 38 1 2.6104 1.1347 -4.8600 39 1 2.1396 2.0174 2.4833 40 1 0.5129 1.3821 2.0903 41 1 0.0972 0.7144 4.3747 42 1 1.0356 2.2271 4.6112 43 1 2.0450 -1.5800 3.9232 44 1 3.6057 -0.7762 3.6023 45 1 1.5129 0.4522 6.8130 46 1 0.9362 -0.9404 5.8669 47 1 2.6373 -1.6408 7.5297 48 1 3.2300 -1.8899 5.8691 49 1 3.8914 0.4612 7.7022 50 1 5.0005 -0.8413 7.2035 51 1 8.7390 -0.2786 6.1146 52 1 3.7922 1.6829 4.0757 53 1 3.1347 2.1329 5.6700 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699697979.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:02 Heat of formation + Delta-G solvation = -49.741909 kcal Electronic energy + Delta-G solvation = -30748.912133 eV Core-core repulsion = 26814.248955 eV Total energy + Delta-G solvation = -3934.663178 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.70712 -40.29268 -39.10669 -37.61288 -37.35969 -34.96963 -33.37010 -32.69021 -32.08380 -30.16398 -28.11339 -27.75860 -27.11851 -25.20816 -24.02081 -23.60416 -23.28209 -22.42803 -21.79490 -20.46330 -19.71169 -18.71072 -18.49246 -17.71968 -17.30354 -17.15689 -16.97063 -16.36579 -15.99859 -15.81496 -15.51171 -15.22040 -15.11252 -14.94095 -14.69563 -14.49503 -14.21396 -13.94566 -13.87325 -13.73674 -13.54202 -13.37802 -13.29421 -12.94892 -12.81751 -12.69893 -12.61383 -12.43315 -12.40319 -12.07086 -12.04158 -11.75265 -11.67903 -11.51164 -11.44522 -11.32489 -11.20232 -11.08996 -10.90001 -10.66459 -10.41530 -9.69871 -8.90375 -8.17595 -5.50105 1.30081 1.39632 1.45187 1.50230 1.70815 2.41389 2.61884 2.95410 3.03153 3.29452 3.39076 3.68363 3.68730 3.79481 3.81726 3.86684 3.91956 4.03119 4.11600 4.16626 4.23975 4.25472 4.30346 4.37974 4.43519 4.47678 4.54774 4.62597 4.63894 4.74006 4.74990 4.77796 4.79709 4.83086 4.93734 4.98003 4.98641 5.02840 5.07972 5.12939 5.17810 5.18260 5.20000 5.22284 5.25463 5.36600 5.42131 5.51451 5.85460 6.09137 6.11159 6.50176 6.92131 7.08219 7.62644 8.02189 9.03007 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013691 B = 0.003033 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.678344 B = 9231.068249 C =10605.203783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.081 3.919 3 H 0.108 0.892 4 O -0.391 6.391 5 C 0.088 3.912 6 C -0.174 4.174 7 C -0.193 4.193 8 C -0.146 4.146 9 C 0.513 3.487 10 O -0.587 6.587 11 N -0.613 5.613 12 C 0.084 3.916 13 C -0.107 4.107 14 C -0.079 4.079 15 C 0.132 3.868 16 C -0.087 4.087 17 C -0.136 4.136 18 C 0.119 3.881 19 N -0.618 5.618 20 C -0.242 4.242 21 H 0.036 0.964 22 C -0.041 4.041 23 N -0.964 5.964 24 Si 0.957 3.043 25 H -0.280 1.280 26 H -0.314 1.314 27 H -0.248 1.248 28 C 0.161 3.839 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.075 0.925 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.114 0.886 43 H 0.051 0.949 44 H 0.025 0.975 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.037 0.963 49 H 0.044 0.956 50 H 0.038 0.962 51 H 0.260 0.740 52 H 0.045 0.955 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.288 7.967 -11.049 26.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.021 3.979 3 H 0.125 0.875 4 O -0.310 6.310 5 C 0.012 3.988 6 C -0.193 4.193 7 C -0.230 4.230 8 C -0.183 4.183 9 C 0.302 3.698 10 O -0.466 6.466 11 N -0.347 5.347 12 C -0.036 4.036 13 C -0.145 4.145 14 C -0.081 4.081 15 C 0.009 3.991 16 C -0.124 4.124 17 C -0.175 4.175 18 C -0.005 4.005 19 N -0.343 5.343 20 C -0.372 4.372 21 H 0.054 0.946 22 C -0.236 4.236 23 N -0.610 5.610 24 Si 0.785 3.215 25 H -0.207 1.207 26 H -0.243 1.243 27 H -0.172 1.172 28 C 0.037 3.963 29 H 0.073 0.927 30 H 0.113 0.887 31 H 0.117 0.883 32 H 0.101 0.899 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.112 0.888 36 H 0.112 0.888 37 H 0.129 0.871 38 H 0.131 0.869 39 H 0.094 0.906 40 H 0.133 0.867 41 H 0.119 0.881 42 H 0.132 0.868 43 H 0.069 0.931 44 H 0.043 0.957 45 H 0.107 0.893 46 H 0.098 0.902 47 H 0.102 0.898 48 H 0.056 0.944 49 H 0.062 0.938 50 H 0.056 0.944 51 H 0.069 0.931 52 H 0.063 0.937 53 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -22.872 7.128 -11.172 26.434 hybrid contribution 1.566 -0.509 0.699 1.789 sum -21.306 6.618 -10.473 24.646 Atomic orbital electron populations 1.22262 0.90622 1.03695 1.05324 1.21949 0.97059 0.95944 0.82992 0.87475 1.88022 1.87000 1.35992 1.20019 1.22315 1.00661 0.91655 0.84161 1.22144 1.01416 1.00827 0.94876 1.23161 0.91154 1.03891 1.04798 1.23075 0.99967 1.01857 0.93378 1.20981 0.78163 0.85989 0.84618 1.90689 1.48363 1.21392 1.86194 1.48660 1.58326 1.20740 1.07007 1.22955 0.99399 0.82712 0.98583 1.22871 0.97084 1.02197 0.92384 1.21499 0.96815 0.95503 0.94311 1.21723 0.96914 0.97101 0.83315 1.21298 0.96685 0.99021 0.95442 1.22016 0.96190 0.98123 1.01149 1.21417 0.96593 0.93759 0.88771 1.44445 1.06460 1.53967 1.29392 1.18712 0.83231 1.43839 0.91448 0.94600 1.26013 0.94716 1.00018 1.02811 1.70014 1.04067 1.49761 1.37175 0.85740 0.76118 0.78667 0.80978 1.20709 1.24304 1.17154 1.21003 0.86989 0.92169 0.96149 0.92684 0.88670 0.88294 0.89883 0.92756 0.88317 0.88767 0.88751 0.87141 0.86912 0.90643 0.86703 0.88129 0.86786 0.93093 0.95652 0.89307 0.90159 0.89823 0.94395 0.93793 0.94377 0.93092 0.93661 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.48 9.35 71.98 0.67 -1.80 16 2 C 0.08 1.93 2.48 29.85 0.07 2.00 16 3 H 0.11 1.93 7.54 -2.39 -0.02 1.92 16 4 O -0.39 -11.22 9.57 -130.45 -1.25 -12.47 16 5 C 0.09 1.74 6.03 71.98 0.43 2.17 16 6 C -0.17 -3.48 6.06 -10.80 -0.07 -3.54 16 7 C -0.19 -3.61 10.18 30.60 0.31 -3.29 16 8 C -0.15 -1.98 10.25 30.59 0.31 -1.67 16 9 C 0.51 17.62 7.13 87.66 0.63 18.24 16 10 O -0.59 -27.41 16.91 15.49 0.26 -27.15 16 11 N -0.61 -18.24 3.33 -811.78 -2.70 -20.94 16 12 C 0.08 1.51 6.14 86.97 0.53 2.04 16 13 C -0.11 -1.74 6.01 31.88 0.19 -1.55 16 14 C -0.08 -2.16 0.54 -51.91 -0.03 -2.19 16 15 C 0.13 4.69 5.05 86.47 0.44 5.13 16 16 C -0.09 -2.14 4.52 30.40 0.14 -2.01 16 17 C -0.14 -4.44 5.92 30.72 0.18 -4.26 16 18 C 0.12 4.93 4.18 86.36 0.36 5.29 16 19 N -0.62 -28.67 2.38 -700.22 -1.67 -30.34 16 20 C -0.24 -14.17 10.04 84.03 0.84 -13.33 16 21 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 22 C -0.04 -2.50 5.23 84.86 0.44 -2.06 16 23 N -0.96 -63.33 13.97 21.65 0.30 -63.03 16 24 Si 0.96 47.36 24.38 68.60 1.67 49.04 16 25 H -0.28 -13.30 6.72 99.48 0.67 -12.63 16 26 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 27 H -0.25 -11.24 6.50 99.48 0.65 -10.59 16 28 C 0.16 5.70 4.97 86.07 0.43 6.12 16 29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.09 1.03 5.82 -2.39 -0.01 1.02 16 31 H 0.10 0.94 8.00 -2.38 -0.02 0.93 16 32 H 0.08 1.12 8.00 -2.39 -0.02 1.10 16 33 H 0.05 1.02 7.82 -2.39 -0.02 1.00 16 34 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 35 H 0.09 1.77 8.03 -2.39 -0.02 1.75 16 36 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.08 1.35 7.89 -2.39 -0.02 1.33 16 40 H 0.12 1.17 5.49 -2.39 -0.01 1.16 16 41 H 0.10 1.24 8.02 -2.39 -0.02 1.22 16 42 H 0.11 1.32 7.98 -2.38 -0.02 1.30 16 43 H 0.05 1.87 7.61 -2.39 -0.02 1.85 16 44 H 0.02 1.20 7.56 -2.39 -0.02 1.18 16 45 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 46 H 0.08 1.65 8.11 -2.39 -0.02 1.63 16 47 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 48 H 0.04 1.43 7.28 -2.39 -0.02 1.42 16 49 H 0.04 1.67 7.02 -2.39 -0.02 1.66 16 50 H 0.04 1.81 4.59 -2.38 -0.01 1.80 16 51 H 0.26 16.21 8.31 -92.71 -0.77 15.44 16 52 H 0.04 1.72 7.48 -2.39 -0.02 1.70 16 53 H 0.05 1.63 8.11 -2.39 -0.02 1.61 16 Total: -1.00 -86.53 400.65 3.29 -83.24 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 0.78 Total: 16.34 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: 5.90 Total: 5.31 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -4.07 Total: -114.31 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -0.99 Total: -39.62 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 1.67 Total: 49.04 kcal Total: -86.53 3.29 -83.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699697979.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.499 kcal (2) G-P(sol) polarization free energy of solvation -86.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds