Wall clock time and date at job start Tue Mar 31 2020 20:33:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09005 * 109.47177 * 2 1 4 4 O 1.42904 * 109.47438 * 240.00142 * 2 1 3 5 5 C 1.42897 * 113.99997 * 89.99369 * 4 2 1 6 6 C 1.52994 * 109.47161 * 180.02562 * 5 4 2 7 7 C 1.53006 * 117.49995 * 243.75258 * 6 5 4 8 8 C 1.53001 * 117.50329 * 175.09062 * 6 5 4 9 9 C 1.50701 * 109.47250 * 120.00226 * 2 1 3 10 10 O 1.21273 * 120.00217 * 113.00892 * 9 2 1 11 11 N 1.34781 * 119.99756 * 293.01023 * 9 2 1 12 12 C 1.47079 * 125.62695 * 174.75406 * 11 9 2 13 13 C 1.54467 * 107.42559 * 178.90473 * 12 11 9 14 14 C 1.54575 * 102.76225 * 338.69381 * 13 12 11 15 15 C 1.47579 * 125.62823 * 354.72492 * 11 9 2 16 16 C 1.52070 * 110.68085 * 152.61405 * 14 13 12 17 17 C 1.53175 * 109.73168 * 64.31432 * 16 14 13 18 18 C 1.53188 * 109.27853 * 59.92946 * 17 16 14 19 19 N 1.46950 * 108.89997 * 304.61530 * 18 17 16 20 20 C 1.36937 * 120.71521 * 234.30702 * 19 18 17 21 21 H 1.08001 * 119.99948 * 149.57534 * 20 19 18 22 22 C 1.38812 * 120.00239 * 329.57073 * 20 19 18 23 23 N 1.31620 * 120.00294 * 159.77796 * 22 20 19 24 24 Si 1.86798 * 120.00013 * 339.77787 * 22 20 19 25 25 H 1.48506 * 109.47275 * 89.70642 * 24 22 20 26 26 H 1.48498 * 109.47334 * 209.70554 * 24 22 20 27 27 H 1.48502 * 109.47193 * 329.71000 * 24 22 20 28 28 C 1.47091 * 118.56278 * 54.32873 * 19 18 17 29 29 H 1.09005 * 109.47169 * 184.65578 * 1 2 3 30 30 H 1.09008 * 109.47387 * 304.65267 * 1 2 3 31 31 H 1.08995 * 109.47483 * 64.65380 * 1 2 3 32 32 H 1.09003 * 109.47723 * 300.00688 * 5 4 2 33 33 H 1.09007 * 109.46714 * 60.00491 * 5 4 2 34 34 H 1.09000 * 115.55175 * 29.41858 * 6 5 4 35 35 H 1.08992 * 117.49876 * 359.97438 * 7 6 5 36 36 H 1.09005 * 117.49638 * 145.02172 * 7 6 5 37 37 H 1.08995 * 117.50283 * 214.98557 * 8 6 5 38 38 H 1.09007 * 117.49044 * 359.97438 * 8 6 5 39 39 H 1.08998 * 109.87951 * 298.40448 * 12 11 9 40 40 H 1.09006 * 109.88104 * 59.40984 * 12 11 9 41 41 H 1.08997 * 110.73619 * 96.95319 * 13 12 11 42 42 H 1.08999 * 110.73473 * 220.26238 * 13 12 11 43 43 H 1.08997 * 110.37628 * 322.14420 * 15 11 9 44 44 H 1.09000 * 110.37243 * 84.49365 * 15 11 9 45 45 H 1.09002 * 109.42420 * 184.39556 * 16 14 13 46 46 H 1.09001 * 109.42600 * 304.28662 * 16 14 13 47 47 H 1.08997 * 109.50473 * 179.87326 * 17 16 14 48 48 H 1.09001 * 109.50445 * 299.94917 * 17 16 14 49 49 H 1.08999 * 109.56937 * 64.43978 * 18 17 16 50 50 H 1.09000 * 109.56483 * 184.67534 * 18 17 16 51 51 H 0.96996 * 119.99893 * 180.02562 * 23 22 20 52 52 H 1.09006 * 109.56499 * 187.95387 * 28 19 18 53 53 H 1.08994 * 109.57069 * 67.59744 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2000 0.1829 -2.2941 6 6 2.7079 -0.6407 -3.4792 7 6 4.1060 -0.3226 -4.0132 8 6 2.8685 0.0766 -4.8210 9 6 2.0323 -0.7105 1.2304 10 8 2.6215 -1.7651 1.1237 11 7 1.8268 -0.1738 2.4496 12 6 2.1643 -0.8081 3.7329 13 6 1.7772 0.1815 4.8540 14 6 1.7440 1.5387 4.1150 15 6 1.2264 1.1476 2.7171 16 6 0.7809 2.4980 4.7967 17 6 1.2838 2.8204 6.2071 18 6 2.6695 3.4670 6.1145 19 7 3.5617 2.5748 5.3613 20 6 4.7560 2.1679 5.8935 21 1 5.1648 1.2040 5.6288 22 6 5.4414 2.9945 6.7733 23 7 6.3477 2.4876 7.5820 24 14 5.0776 4.8264 6.8093 25 1 3.9901 5.0960 7.7840 26 1 6.2999 5.5660 7.2144 27 1 4.6533 5.2735 5.4583 28 6 3.1444 2.1285 4.0233 29 1 -0.3634 -1.0243 0.0834 30 1 -0.3634 0.5844 0.8454 31 1 -0.3634 0.4399 -0.9287 32 1 1.2537 0.6547 -2.5589 33 1 2.9319 0.9514 -2.0450 34 1 2.3859 -1.6818 -3.5005 35 1 4.6637 0.4737 -3.5205 36 1 4.7035 -1.1545 -4.3862 37 1 2.6525 -0.4926 -5.7251 38 1 2.6119 1.1354 -4.8595 39 1 1.6029 -1.7354 3.8470 40 1 3.2338 -1.0149 3.7742 41 1 0.7951 -0.0604 5.2601 42 1 2.5309 0.1867 5.6414 43 1 1.5573 1.8724 1.9733 44 1 0.1388 1.0764 2.7213 45 1 0.7142 3.4182 4.2163 46 1 -0.2050 2.0375 4.8606 47 1 0.5922 3.5098 6.6914 48 1 1.3488 1.9013 6.7893 49 1 2.5918 4.4248 5.5999 50 1 3.0675 3.6226 7.1172 51 1 6.8263 3.0652 8.1969 52 1 3.8369 1.3696 3.6591 53 1 3.1387 2.9780 3.3404 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699697982.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:07 Heat of formation + Delta-G solvation = -50.476555 kcal Electronic energy + Delta-G solvation = -30716.699451 eV Core-core repulsion = 26782.004416 eV Total energy + Delta-G solvation = -3934.695035 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.70853 -40.25794 -39.10626 -37.59914 -37.29945 -34.86680 -33.32463 -32.74288 -31.93578 -30.45491 -28.09494 -27.58947 -26.97021 -25.49246 -23.71313 -23.30850 -23.22775 -22.87616 -21.76275 -20.43918 -19.63389 -18.64511 -18.41424 -17.68057 -17.30966 -17.12048 -16.88088 -16.58101 -15.82486 -15.80890 -15.41746 -15.32323 -15.17759 -14.87144 -14.66348 -14.38363 -14.22674 -14.02752 -13.78049 -13.65628 -13.56614 -13.43027 -13.18288 -13.09188 -12.83490 -12.63839 -12.50511 -12.41280 -12.38433 -12.07642 -12.01163 -11.79479 -11.55020 -11.47222 -11.43121 -11.31075 -11.20458 -11.11419 -10.86547 -10.63196 -10.39469 -9.70525 -8.84804 -8.16684 -5.50032 1.30281 1.41446 1.50460 1.51024 1.65425 2.42222 2.62740 2.96337 3.06290 3.28188 3.36472 3.62349 3.76737 3.83285 3.86212 3.89526 3.94507 4.05214 4.13457 4.23206 4.25355 4.30020 4.32490 4.36083 4.45922 4.47601 4.59190 4.65715 4.68939 4.70235 4.76318 4.77718 4.81182 4.88206 4.89843 4.97561 4.99698 5.03812 5.09477 5.17320 5.19830 5.20563 5.23555 5.27045 5.32001 5.37817 5.44131 5.61267 5.89752 6.10459 6.13765 6.47612 6.95214 7.07932 7.64357 8.04888 9.03916 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014275 B = 0.002851 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.017799 B = 9819.138483 C =10535.178345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.079 3.921 3 H 0.108 0.892 4 O -0.388 6.388 5 C 0.088 3.912 6 C -0.172 4.172 7 C -0.191 4.191 8 C -0.150 4.150 9 C 0.519 3.481 10 O -0.582 6.582 11 N -0.609 5.609 12 C 0.113 3.887 13 C -0.104 4.104 14 C -0.080 4.080 15 C 0.110 3.890 16 C -0.086 4.086 17 C -0.129 4.129 18 C 0.117 3.883 19 N -0.614 5.614 20 C -0.243 4.243 21 H 0.038 0.962 22 C -0.036 4.036 23 N -0.961 5.961 24 Si 0.952 3.048 25 H -0.268 1.268 26 H -0.316 1.316 27 H -0.261 1.261 28 C 0.163 3.837 29 H 0.053 0.947 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.031 0.969 41 H 0.098 0.902 42 H 0.059 0.941 43 H 0.095 0.905 44 H 0.113 0.887 45 H 0.079 0.921 46 H 0.095 0.905 47 H 0.084 0.916 48 H 0.053 0.947 49 H 0.034 0.966 50 H 0.042 0.958 51 H 0.261 0.739 52 H 0.031 0.969 53 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.693 1.832 -19.415 27.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.018 3.982 3 H 0.125 0.875 4 O -0.307 6.307 5 C 0.012 3.988 6 C -0.190 4.190 7 C -0.228 4.228 8 C -0.187 4.187 9 C 0.308 3.692 10 O -0.462 6.462 11 N -0.343 5.343 12 C -0.010 4.010 13 C -0.142 4.142 14 C -0.082 4.082 15 C -0.012 4.012 16 C -0.123 4.123 17 C -0.168 4.168 18 C -0.008 4.008 19 N -0.339 5.339 20 C -0.373 4.373 21 H 0.056 0.944 22 C -0.231 4.231 23 N -0.607 5.607 24 Si 0.781 3.219 25 H -0.194 1.194 26 H -0.245 1.245 27 H -0.186 1.186 28 C 0.038 3.962 29 H 0.072 0.928 30 H 0.116 0.884 31 H 0.111 0.889 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.118 0.882 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.088 0.912 40 H 0.049 0.951 41 H 0.117 0.883 42 H 0.078 0.922 43 H 0.113 0.887 44 H 0.131 0.869 45 H 0.098 0.902 46 H 0.114 0.886 47 H 0.102 0.898 48 H 0.072 0.928 49 H 0.051 0.949 50 H 0.061 0.939 51 H 0.069 0.931 52 H 0.050 0.950 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -19.217 1.067 -19.468 27.376 hybrid contribution 1.338 0.414 0.740 1.584 sum -17.879 1.481 -18.728 25.934 Atomic orbital electron populations 1.22227 0.90767 1.03519 1.05385 1.21948 0.96920 0.96125 0.83206 0.87483 1.88005 1.86974 1.35855 1.19896 1.22305 1.00591 0.91692 0.84240 1.22134 1.01364 1.00822 0.94710 1.23170 0.91076 1.03881 1.04628 1.23084 1.00323 1.01793 0.93520 1.20828 0.78736 0.85248 0.84354 1.90686 1.43136 1.25759 1.86583 1.48534 1.61166 1.20122 1.04495 1.21880 0.99019 0.97004 0.83102 1.22513 1.02686 0.93074 0.95942 1.21560 0.96389 0.95530 0.94756 1.22664 0.99560 0.82588 0.96368 1.21216 0.97621 0.98888 0.94618 1.21942 0.95596 1.00960 0.98266 1.21451 0.91695 0.92677 0.94948 1.44401 1.17703 1.56858 1.14911 1.18698 0.97406 0.98470 1.22685 0.94447 1.26013 0.96753 1.02190 0.98110 1.69987 1.30199 1.36529 1.23953 0.85821 0.75654 0.81643 0.78807 1.19416 1.24486 1.18576 1.20823 0.93635 0.96218 0.85561 0.92761 0.88442 0.88914 0.90172 0.92703 0.88181 0.88706 0.88620 0.87236 0.87124 0.91234 0.95059 0.88311 0.92243 0.88691 0.86894 0.90232 0.88634 0.89757 0.92829 0.94854 0.93927 0.93054 0.95045 0.94625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.39 71.98 0.68 -1.55 16 2 C 0.08 1.67 2.52 29.85 0.08 1.75 16 3 H 0.11 1.73 7.10 -2.38 -0.02 1.71 16 4 O -0.39 -10.00 9.53 -130.04 -1.24 -11.24 16 5 C 0.09 1.55 6.03 71.98 0.43 1.99 16 6 C -0.17 -3.04 6.05 -10.79 -0.07 -3.11 16 7 C -0.19 -3.10 10.18 30.62 0.31 -2.79 16 8 C -0.15 -1.81 10.25 30.62 0.31 -1.49 16 9 C 0.52 15.77 7.19 87.66 0.63 16.40 16 10 O -0.58 -24.17 16.85 15.94 0.27 -23.90 16 11 N -0.61 -16.11 3.32 -812.56 -2.70 -18.81 16 12 C 0.11 3.41 6.44 86.77 0.56 3.97 16 13 C -0.10 -2.90 4.92 31.63 0.16 -2.74 16 14 C -0.08 -2.01 0.56 -51.83 -0.03 -2.04 16 15 C 0.11 2.02 4.57 86.55 0.40 2.41 16 16 C -0.09 -1.72 4.64 30.35 0.14 -1.58 16 17 C -0.13 -3.53 5.92 30.72 0.18 -3.35 16 18 C 0.12 4.48 4.20 86.36 0.36 4.84 16 19 N -0.61 -27.31 2.34 -700.47 -1.64 -28.95 16 20 C -0.24 -13.70 10.02 84.03 0.84 -12.86 16 21 H 0.04 2.40 8.06 -2.91 -0.02 2.38 16 22 C -0.04 -2.11 5.22 84.86 0.44 -1.67 16 23 N -0.96 -61.06 13.97 21.65 0.30 -60.76 16 24 Si 0.95 46.03 24.43 68.60 1.68 47.71 16 25 H -0.27 -12.00 6.54 99.48 0.65 -11.35 16 26 H -0.32 -15.76 7.11 99.48 0.71 -15.05 16 27 H -0.26 -11.98 6.93 99.48 0.69 -11.29 16 28 C 0.16 5.82 5.16 86.01 0.44 6.26 16 29 H 0.05 0.93 8.14 -2.38 -0.02 0.92 16 30 H 0.10 0.89 6.06 -2.38 -0.01 0.87 16 31 H 0.09 0.87 7.79 -2.39 -0.02 0.85 16 32 H 0.08 0.97 7.79 -2.39 -0.02 0.96 16 33 H 0.05 0.92 7.82 -2.38 -0.02 0.90 16 34 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.09 1.54 8.03 -2.39 -0.02 1.52 16 36 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 37 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.11 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.10 2.15 7.99 -2.39 -0.02 2.13 16 42 H 0.06 2.18 7.70 -2.39 -0.02 2.17 16 43 H 0.09 1.42 7.20 -2.39 -0.02 1.40 16 44 H 0.11 1.26 7.00 -2.39 -0.02 1.24 16 45 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.10 1.31 8.10 -2.39 -0.02 1.29 16 47 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.05 1.62 7.42 -2.39 -0.02 1.60 16 49 H 0.03 1.22 7.25 -2.39 -0.02 1.20 16 50 H 0.04 1.88 4.74 -2.39 -0.01 1.87 16 51 H 0.26 15.75 8.31 -92.71 -0.77 14.98 16 52 H 0.03 1.30 7.54 -2.38 -0.02 1.28 16 53 H 0.04 1.19 8.12 -2.39 -0.02 1.17 16 Total: -1.00 -80.24 401.57 3.34 -76.91 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: 0.80 Total: 14.59 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: 5.87 Total: 4.45 kcal Atomic # 7 Polarization: -104.48 SS G_CDS: -4.04 Total: -108.52 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -0.97 Total: -35.14 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 1.68 Total: 47.71 kcal Total: -80.24 3.34 -76.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699697982.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.429 kcal (2) G-P(sol) polarization free energy of solvation -80.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds