Wall clock time and date at job start Tue Mar 31 2020 19:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50700 * 119.99831 * 2 1 4 4 C 1.53004 * 109.47015 * 120.41095 * 3 2 1 5 5 C 1.50703 * 109.54333 * 305.99072 * 4 3 2 6 6 O 1.21274 * 120.00613 * 122.06375 * 5 4 3 7 7 N 1.34786 * 119.99661 * 302.06156 * 5 4 3 8 8 C 1.47019 * 125.64829 * 354.61599 * 7 5 4 9 9 C 1.54327 * 107.27164 * 181.09678 * 8 7 5 10 10 C 1.55154 * 102.94136 * 22.18942 * 9 8 7 11 11 H 1.09004 * 111.00054 * 82.57148 * 10 9 8 12 12 C 1.52997 * 111.00576 * 206.42539 * 10 9 8 13 13 H 1.08995 * 109.47261 * 64.66576 * 12 10 9 14 14 C 1.52995 * 109.47029 * 304.66381 * 12 10 9 15 15 N 1.46506 * 109.47026 * 184.66661 * 12 10 9 16 16 C 1.36943 * 119.99768 * 205.00016 * 15 12 10 17 17 H 1.07992 * 119.99801 * 359.97438 * 16 15 12 18 18 C 1.38813 * 119.99885 * 180.02562 * 16 15 12 19 19 N 1.31627 * 119.99756 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99910 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.46950 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.46888 * 120.00028 * 20 18 16 23 23 H 1.48492 * 109.46761 * 239.99865 * 20 18 16 24 24 C 1.47423 * 125.64667 * 174.65715 * 7 5 4 25 25 C 1.53171 * 109.54286 * 66.16369 * 4 3 2 26 26 C 1.53288 * 109.06358 * 176.85448 * 25 4 3 27 27 O 1.42908 * 109.45917 * 302.44552 * 26 25 4 28 28 C 1.42901 * 114.09702 * 61.15786 * 27 26 25 29 29 C 1.53095 * 109.41485 * 298.84385 * 28 27 26 30 30 H 1.07995 * 119.99953 * 359.97438 * 1 2 3 31 31 H 1.08005 * 119.99722 * 179.97438 * 1 2 3 32 32 H 1.08003 * 120.00232 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47403 * 0.41455 * 3 2 1 34 34 H 1.08998 * 109.47535 * 240.40837 * 3 2 1 35 35 H 1.08999 * 109.88302 * 61.68060 * 8 7 5 36 36 H 1.09004 * 110.01333 * 300.58659 * 8 7 5 37 37 H 1.08992 * 110.72357 * 140.55560 * 9 8 7 38 38 H 1.08998 * 110.71812 * 263.82999 * 9 8 7 39 39 H 1.08999 * 109.47041 * 65.05466 * 14 12 10 40 40 H 1.08998 * 109.47159 * 185.05227 * 14 12 10 41 41 H 1.09006 * 109.47425 * 305.05442 * 14 12 10 42 42 H 0.97001 * 120.00112 * 24.99674 * 15 12 10 43 43 H 0.97001 * 119.99326 * 180.02562 * 19 18 16 44 44 H 1.09000 * 110.36877 * 274.67320 * 24 7 5 45 45 H 1.09007 * 110.36362 * 36.89063 * 24 7 5 46 46 H 1.08994 * 109.52730 * 296.84092 * 25 4 3 47 47 H 1.09000 * 109.52462 * 57.03494 * 25 4 3 48 48 H 1.08996 * 109.45802 * 182.45292 * 26 25 4 49 49 H 1.08998 * 109.45927 * 62.44339 * 26 25 4 50 50 H 1.09002 * 109.48139 * 178.85708 * 28 27 26 51 51 H 1.09003 * 109.48277 * 58.82173 * 28 27 26 52 52 H 1.09002 * 109.51895 * 297.70178 * 29 28 27 53 53 H 1.08999 * 109.57573 * 177.54726 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9508 1.3817 1.2441 5 6 2.1135 1.1506 2.4756 6 8 2.3860 0.2433 3.2327 7 7 1.0617 1.9523 2.7355 8 6 0.6870 3.1497 1.9692 9 6 -0.5592 3.7566 2.6477 10 6 -0.4809 3.1890 4.0895 11 1 0.1942 3.7818 4.7066 12 6 -1.8711 3.1081 4.7233 13 1 -2.4803 2.3914 4.1726 14 6 -2.5349 4.4856 4.6742 15 7 -1.7478 2.6748 6.1173 16 6 -2.7964 2.0462 6.7343 17 1 -3.7143 1.8703 6.1933 18 6 -2.6798 1.6362 8.0553 19 7 -1.5611 1.8511 8.7148 20 14 -4.1104 0.7794 8.8971 21 1 -5.2446 0.6598 7.9460 22 1 -3.6873 -0.5745 9.3366 23 1 -4.5368 1.5724 10.0779 24 6 0.0969 1.7742 3.8359 25 6 4.0444 0.3125 1.1600 26 6 4.9732 0.4500 2.3717 27 8 5.5249 1.7679 2.4016 28 6 4.5503 2.8056 2.5262 29 6 3.6060 2.7641 1.3219 30 1 -0.5400 0.9353 0.0004 31 1 -0.5400 -0.9354 -0.0004 32 1 1.8501 -0.9353 -0.0004 33 1 1.3552 2.1336 0.0074 34 1 2.6846 1.3661 -0.8936 35 1 0.4520 2.8735 0.9413 36 1 1.5041 3.8712 1.9814 37 1 -0.5011 4.8450 2.6580 38 1 -1.4699 3.4226 2.1507 39 1 -2.7082 4.7686 3.6359 40 1 -3.4864 4.4496 5.2046 41 1 -1.8829 5.2202 5.1470 42 1 -0.9234 2.8331 6.6033 43 1 -1.4795 1.5642 9.6378 44 1 -0.6962 1.0884 3.5378 45 1 0.6027 1.4037 4.7276 46 1 3.5873 -0.6769 1.1593 47 1 4.6188 0.4501 0.2439 48 1 5.7793 -0.2798 2.2960 49 1 4.4064 0.2723 3.2856 50 1 5.0517 3.7728 2.5618 51 1 3.9780 2.6588 3.4421 52 1 4.1714 2.9511 0.4090 53 1 2.8353 3.5265 1.4357 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699954626.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:42 Heat of formation + Delta-G solvation = -66.102705 kcal Electronic energy + Delta-G solvation = -31641.998578 eV Core-core repulsion = 27706.625942 eV Total energy + Delta-G solvation = -3935.372635 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.26096 -39.96278 -38.63876 -37.14406 -36.64932 -34.31500 -33.81651 -32.27392 -31.76261 -30.05704 -29.68142 -28.54465 -26.02791 -25.57513 -24.77125 -23.89753 -22.90757 -22.14026 -21.07664 -20.71032 -19.90285 -19.05275 -17.71141 -17.48966 -17.22081 -17.02541 -16.64076 -16.39117 -15.96585 -15.78407 -15.39803 -15.34005 -15.20386 -14.97586 -14.61264 -14.32029 -14.13998 -13.90365 -13.75450 -13.70654 -13.37700 -13.26349 -13.14613 -13.05407 -12.87348 -12.67077 -12.47465 -12.37563 -12.31015 -12.16671 -12.10017 -11.95483 -11.64336 -11.60368 -11.53919 -11.33864 -11.20591 -10.95691 -10.66128 -10.48775 -10.13284 -9.57566 -8.99350 -7.94037 -5.21267 1.36715 1.44565 1.45563 1.54950 1.62378 1.98006 2.55392 2.90768 3.31494 3.40057 3.44645 3.61111 3.70508 3.74818 3.84471 3.97752 4.01710 4.06838 4.15304 4.18645 4.25982 4.32585 4.39973 4.51212 4.56609 4.58860 4.60831 4.66276 4.73033 4.75193 4.76709 4.85387 4.86962 4.87677 4.93749 5.00754 5.05714 5.08328 5.11514 5.13173 5.16837 5.21552 5.27390 5.38962 5.43490 5.53472 5.66459 5.72687 5.84938 6.19368 6.28769 6.59129 7.17579 7.34286 8.12832 8.33172 9.29977 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.014036 B = 0.003187 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.368095 B = 8783.370409 C = 9147.119449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.170 4.170 3 C -0.082 4.082 4 C -0.063 4.063 5 C 0.533 3.467 6 O -0.589 6.589 7 N -0.609 5.609 8 C 0.082 3.918 9 C -0.113 4.113 10 C -0.091 4.091 11 H 0.070 0.930 12 C 0.178 3.822 13 H 0.043 0.957 14 C -0.152 4.152 15 N -0.738 5.738 16 C -0.230 4.230 17 H 0.077 0.923 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.966 3.034 21 H -0.263 1.263 22 H -0.299 1.299 23 H -0.294 1.294 24 C 0.125 3.875 25 C -0.123 4.123 26 C 0.045 3.955 27 O -0.395 6.395 28 C 0.051 3.949 29 C -0.149 4.149 30 H 0.108 0.892 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.030 0.970 41 H 0.043 0.957 42 H 0.369 0.631 43 H 0.248 0.752 44 H 0.053 0.947 45 H 0.030 0.970 46 H 0.069 0.931 47 H 0.103 0.897 48 H 0.102 0.898 49 H 0.041 0.959 50 H 0.119 0.881 51 H 0.017 0.983 52 H 0.113 0.887 53 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.230 5.942 -26.072 28.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.188 4.188 3 C -0.119 4.119 4 C -0.067 4.067 5 C 0.323 3.677 6 O -0.470 6.470 7 N -0.342 5.342 8 C -0.039 4.039 9 C -0.151 4.151 10 C -0.111 4.111 11 H 0.088 0.912 12 C 0.070 3.930 13 H 0.061 0.939 14 C -0.212 4.212 15 N -0.378 5.378 16 C -0.362 4.362 17 H 0.094 0.906 18 C -0.271 4.271 19 N -0.624 5.624 20 Si 0.796 3.204 21 H -0.188 1.188 22 H -0.227 1.227 23 H -0.221 1.221 24 C 0.002 3.998 25 C -0.161 4.161 26 C -0.031 4.031 27 O -0.314 6.314 28 C -0.025 4.025 29 C -0.186 4.186 30 H 0.126 0.874 31 H 0.109 0.891 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.114 0.886 37 H 0.129 0.871 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.050 0.950 41 H 0.063 0.937 42 H 0.200 0.800 43 H 0.057 0.943 44 H 0.071 0.929 45 H 0.048 0.952 46 H 0.087 0.913 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.059 0.941 50 H 0.137 0.863 51 H 0.035 0.965 52 H 0.132 0.868 53 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.438 5.376 -25.717 27.917 hybrid contribution -0.792 -1.233 1.982 2.465 sum 8.646 4.144 -23.736 25.599 Atomic orbital electron populations 1.23959 0.96088 1.02326 1.00231 1.23005 0.96253 0.98965 1.00605 1.21049 0.98591 0.96177 0.96052 1.20863 0.94881 0.98487 0.92422 1.20851 0.79528 0.80296 0.87020 1.90649 1.70432 1.34460 1.51409 1.48531 1.26899 1.28095 1.30629 1.22872 0.98384 0.86131 0.96519 1.22747 0.97946 1.02308 0.92062 1.22449 0.96599 0.94119 0.97948 0.91174 1.20418 0.93496 0.94780 0.84278 0.93863 1.22273 0.99793 0.97569 1.01532 1.42689 1.15387 1.69930 1.09822 1.19642 0.94423 1.27842 0.94324 0.90559 1.25500 0.99635 1.03819 0.98098 1.69834 1.27370 1.54600 1.10552 0.85166 0.79400 0.77347 0.78484 1.18764 1.22715 1.22112 1.21941 0.90792 0.98136 0.88943 1.22065 0.95795 0.98502 0.99766 1.22866 0.97771 0.84278 0.98233 1.87862 1.33875 1.15201 1.94510 1.22728 0.91331 0.92153 0.96326 1.22566 1.00128 0.94966 1.00912 0.87406 0.89123 0.88126 0.88338 0.87097 0.88108 0.88597 0.87085 0.89062 0.89900 0.95047 0.93734 0.79991 0.94337 0.92891 0.95166 0.91274 0.87824 0.88023 0.94106 0.86284 0.96479 0.86839 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.45 14.32 67.78 0.97 -2.48 16 2 C -0.17 -3.03 8.03 25.65 0.21 -2.83 16 3 C -0.08 -1.06 4.47 29.85 0.13 -0.93 16 4 C -0.06 -1.18 0.28 -52.81 -0.01 -1.19 16 5 C 0.53 15.19 4.33 87.66 0.38 15.57 16 6 O -0.59 -23.19 14.01 -3.01 -0.04 -23.23 16 7 N -0.61 -15.84 3.31 -811.77 -2.68 -18.52 16 8 C 0.08 1.26 5.39 86.73 0.47 1.72 16 9 C -0.11 -1.91 5.17 31.78 0.16 -1.74 16 10 C -0.09 -2.65 2.69 -9.40 -0.03 -2.68 16 11 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 12 C 0.18 6.45 2.49 44.99 0.11 6.57 16 13 H 0.04 1.61 7.91 -2.39 -0.02 1.59 16 14 C -0.15 -4.69 9.09 71.98 0.65 -4.04 16 15 N -0.74 -36.71 5.06 -322.95 -1.63 -38.34 16 16 C -0.23 -12.78 9.93 84.03 0.83 -11.94 16 17 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 18 C -0.08 -4.60 5.50 84.86 0.47 -4.14 16 19 N -0.97 -61.27 13.06 21.65 0.28 -60.98 16 20 Si 0.97 47.23 29.55 68.60 2.03 49.25 16 21 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 22 H -0.30 -14.88 7.11 99.48 0.71 -14.17 16 23 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 24 C 0.13 4.28 6.35 86.86 0.55 4.83 16 25 C -0.12 -2.46 4.36 30.75 0.13 -2.33 16 26 C 0.04 1.13 6.56 72.08 0.47 1.60 16 27 O -0.40 -9.87 10.77 -148.98 -1.60 -11.48 16 28 C 0.05 1.05 6.62 72.01 0.48 1.53 16 29 C -0.15 -2.09 4.78 30.68 0.15 -1.94 16 30 H 0.11 1.66 7.73 -2.91 -0.02 1.64 16 31 H 0.09 1.72 8.06 -2.91 -0.02 1.70 16 32 H 0.10 1.93 7.23 -2.91 -0.02 1.91 16 33 H 0.10 0.95 4.32 -2.39 -0.01 0.94 16 34 H 0.11 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.10 1.04 5.21 -2.39 -0.01 1.03 16 36 H 0.10 1.08 5.45 -2.38 -0.01 1.07 16 37 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.09 1.38 8.02 -2.39 -0.02 1.36 16 39 H 0.08 1.82 7.35 -2.39 -0.02 1.80 16 40 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 42 H 0.37 20.23 7.80 -92.71 -0.72 19.51 16 43 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 44 H 0.05 1.93 7.91 -2.39 -0.02 1.91 16 45 H 0.03 1.32 7.98 -2.38 -0.02 1.30 16 46 H 0.07 1.54 6.92 -2.39 -0.02 1.53 16 47 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 49 H 0.04 1.35 5.74 -2.39 -0.01 1.34 16 50 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 51 H 0.02 0.46 7.38 -2.39 -0.02 0.44 16 52 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 53 H 0.11 1.10 4.39 -2.39 -0.01 1.09 16 Total: -1.00 -77.42 396.23 2.65 -74.77 By element: Atomic # 1 Polarization: 32.78 SS G_CDS: 0.17 Total: 32.95 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: 6.13 Total: -4.42 kcal Atomic # 7 Polarization: -113.81 SS G_CDS: -4.04 Total: -117.85 kcal Atomic # 8 Polarization: -33.06 SS G_CDS: -1.65 Total: -34.71 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 2.03 Total: 49.25 kcal Total: -77.42 2.65 -74.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699954626.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.665 kcal (2) G-P(sol) polarization free energy of solvation -77.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds