Wall clock time and date at job start Tue Mar 31 2020 19:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09009 * 109.47311 * 2 1 4 4 N 1.46493 * 109.47138 * 239.99791 * 2 1 3 5 5 C 1.36939 * 120.00457 * 85.00418 * 4 2 1 6 6 H 1.08000 * 119.99771 * 359.97438 * 5 4 2 7 7 C 1.38810 * 120.00600 * 180.02562 * 5 4 2 8 8 N 1.31622 * 119.99826 * 359.97438 * 7 5 4 9 9 Si 1.86792 * 120.00417 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47299 * 179.97438 * 9 7 5 11 11 H 1.48502 * 109.47201 * 300.00363 * 9 7 5 12 12 H 1.48501 * 109.46928 * 60.00039 * 9 7 5 13 13 C 1.53007 * 109.47312 * 119.99595 * 2 1 3 14 14 H 1.08996 * 109.50964 * 300.10412 * 13 2 1 15 15 C 1.53287 * 109.51186 * 179.97438 * 13 2 1 16 16 N 1.47161 * 108.38386 * 187.77407 * 15 13 2 17 17 C 1.34769 * 120.98316 * 230.51594 * 16 15 13 18 18 O 1.21285 * 120.00201 * 354.74746 * 17 16 15 19 19 C 1.50699 * 120.00223 * 174.75049 * 17 16 15 20 20 C 1.53011 * 109.46932 * 300.63000 * 19 17 16 21 21 C 1.53000 * 109.47041 * 179.97438 * 20 19 17 22 22 C 1.52997 * 109.47146 * 359.97438 * 21 20 19 23 23 C 1.52998 * 109.47579 * 59.99890 * 22 21 20 24 24 C 1.52992 * 109.47574 * 180.62863 * 19 17 16 25 25 C 1.53003 * 109.47089 * 300.00105 * 22 21 20 26 26 C 1.52996 * 109.47073 * 60.62299 * 19 17 16 27 27 C 1.47145 * 118.03203 * 50.53473 * 16 15 13 28 28 C 1.53297 * 108.38824 * 309.46422 * 27 16 15 29 29 O 1.42959 * 109.50931 * 60.25292 * 13 2 1 30 30 H 1.09002 * 109.47309 * 300.00552 * 1 2 3 31 31 H 1.09000 * 109.46984 * 60.00195 * 1 2 3 32 32 H 1.08996 * 109.47131 * 180.02562 * 1 2 3 33 33 H 0.97005 * 120.00033 * 264.99402 * 4 2 1 34 34 H 0.96996 * 120.00075 * 180.02562 * 8 7 5 35 35 H 1.09003 * 109.68448 * 307.49576 * 15 13 2 36 36 H 1.09003 * 109.68272 * 68.05498 * 15 13 2 37 37 H 1.09006 * 109.46521 * 299.99515 * 20 19 17 38 38 H 1.08993 * 109.46821 * 59.99251 * 20 19 17 39 39 H 1.08998 * 109.46491 * 239.99753 * 21 20 19 40 40 H 1.09000 * 109.46938 * 119.99996 * 21 20 19 41 41 H 1.09001 * 109.47192 * 180.02562 * 22 21 20 42 42 H 1.09001 * 109.47432 * 180.02562 * 23 22 21 43 43 H 1.09000 * 109.46818 * 59.99713 * 23 22 21 44 44 H 1.09004 * 109.47024 * 300.00157 * 24 19 17 45 45 H 1.09006 * 109.47481 * 59.99504 * 24 19 17 46 46 H 1.09001 * 109.47307 * 180.02562 * 25 22 21 47 47 H 1.09007 * 109.46883 * 300.00059 * 25 22 21 48 48 H 1.08992 * 109.47563 * 300.00385 * 26 19 17 49 49 H 1.09003 * 109.47122 * 60.00513 * 26 19 17 50 50 H 1.08999 * 109.68345 * 69.18917 * 27 16 15 51 51 H 1.09000 * 109.68353 * 189.74339 * 27 16 15 52 52 H 1.08997 * 109.51396 * 172.22245 * 28 27 16 53 53 H 1.08998 * 109.51511 * 292.33153 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0182 -0.6906 -1.1961 5 6 2.1492 -0.0076 -2.3757 6 1 1.8920 1.0402 -2.4244 7 6 2.6113 -0.6621 -3.5092 8 7 2.9243 -1.9392 -3.4501 9 14 2.7892 0.2695 -5.1185 10 1 3.2983 -0.6490 -6.1685 11 1 1.4667 0.8064 -5.5284 12 1 3.7446 1.3919 -4.9377 13 6 2.0400 -0.7212 1.2493 14 1 1.6755 -0.2089 2.1397 15 6 3.5729 -0.7223 1.2499 16 7 4.0360 -1.5778 2.3541 17 6 4.9519 -1.1347 3.2378 18 8 5.4775 -0.0537 3.0760 19 6 5.3233 -1.9825 4.4271 20 6 4.0761 -2.2500 5.2722 21 6 4.4530 -3.1112 6.4793 22 6 5.9512 -3.4184 6.4387 23 6 6.7417 -2.1092 6.4796 24 6 6.3642 -1.2466 5.2730 25 6 6.2822 -4.1738 5.1499 26 6 5.9063 -3.3118 3.9437 27 6 3.4697 -2.9314 2.4645 28 6 1.9417 -2.8227 2.4047 29 8 1.5688 -2.0709 1.2473 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 2.2490 -1.6318 -1.1525 34 1 3.2476 -2.3965 -4.2420 35 1 3.9401 -1.1156 0.3020 36 1 3.9407 0.2937 1.3936 37 1 3.6607 -1.3028 5.6166 38 1 3.3345 -2.7742 4.6695 39 1 3.8901 -4.0441 6.4497 40 1 4.2167 -2.5732 7.3973 41 1 6.2196 -4.0324 7.2984 42 1 7.8091 -2.3281 6.4503 43 1 6.5059 -1.5710 7.3977 44 1 7.2528 -1.0560 4.6710 45 1 5.9489 -0.2994 5.6175 46 1 7.3495 -4.3931 5.1212 47 1 5.7190 -5.1067 5.1207 48 1 5.1648 -3.8361 3.3411 49 1 6.7949 -3.1214 3.3417 50 1 3.8265 -3.5471 1.6389 51 1 3.7690 -3.3784 3.4125 52 1 1.5077 -3.8208 2.3459 53 1 1.5772 -2.3193 3.3002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700614496.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:47 Heat of formation + Delta-G solvation = -82.848744 kcal Electronic energy + Delta-G solvation = -31861.671683 eV Core-core repulsion = 27925.572884 eV Total energy + Delta-G solvation = -3936.098798 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.62367 -40.55862 -39.22539 -37.16462 -35.91385 -34.22131 -33.00039 -31.95162 -31.85835 -31.31719 -30.12886 -28.88165 -25.98630 -25.13031 -24.54573 -23.65153 -23.51764 -22.76499 -21.25389 -20.48659 -19.35497 -18.63898 -17.78426 -17.52206 -17.29011 -16.95604 -16.63359 -16.47770 -16.22044 -15.92314 -15.75059 -15.56632 -15.11864 -14.79098 -14.35310 -14.06529 -14.01414 -13.90961 -13.58860 -13.41340 -13.08961 -13.06017 -13.03098 -12.97685 -12.92137 -12.84509 -12.74722 -12.51894 -12.50753 -12.33680 -12.23699 -11.80377 -11.69705 -11.53835 -11.44027 -11.35790 -11.11523 -10.94644 -10.79317 -10.65244 -10.38164 -9.61274 -8.95833 -7.90567 -5.17836 1.46470 1.49173 1.49495 1.54801 1.80807 2.57009 2.78484 3.25333 3.42844 3.48535 3.54820 3.67365 3.91100 3.91968 3.93825 4.06353 4.10073 4.15333 4.24766 4.27910 4.31643 4.33677 4.37521 4.38151 4.41048 4.44268 4.45553 4.51094 4.60484 4.69331 4.78982 4.80455 4.83783 4.98541 5.07204 5.08194 5.10067 5.13438 5.19263 5.24796 5.26356 5.33978 5.34679 5.37954 5.44465 5.47394 5.48146 5.52354 5.59766 6.25061 6.31694 6.32338 7.03691 7.38087 8.14130 8.39781 9.32448 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019120 B = 0.003048 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.092434 B = 9184.295981 C = 9589.957327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.172 3.828 3 H 0.056 0.944 4 N -0.726 5.726 5 C -0.238 4.238 6 H 0.074 0.926 7 C -0.074 4.074 8 N -0.966 5.966 9 Si 0.968 3.032 10 H -0.297 1.297 11 H -0.278 1.278 12 H -0.282 1.282 13 C 0.096 3.904 14 H 0.077 0.923 15 C 0.094 3.906 16 N -0.607 5.607 17 C 0.514 3.486 18 O -0.589 6.589 19 C -0.062 4.062 20 C -0.118 4.118 21 C -0.106 4.106 22 C -0.086 4.086 23 C -0.109 4.109 24 C -0.093 4.093 25 C -0.107 4.107 26 C -0.125 4.125 27 C 0.048 3.952 28 C 0.040 3.960 29 O -0.382 6.382 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.046 0.954 33 H 0.378 0.622 34 H 0.249 0.751 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.044 0.956 45 H 0.052 0.948 46 H 0.067 0.933 47 H 0.087 0.913 48 H 0.088 0.912 49 H 0.048 0.952 50 H 0.070 0.930 51 H 0.148 0.852 52 H 0.131 0.869 53 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.313 -7.439 26.395 27.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.063 3.937 3 H 0.073 0.927 4 N -0.367 5.367 5 C -0.370 4.370 6 H 0.092 0.908 7 C -0.266 4.266 8 N -0.617 5.617 9 Si 0.797 3.203 10 H -0.223 1.223 11 H -0.204 1.204 12 H -0.208 1.208 13 C 0.036 3.964 14 H 0.095 0.905 15 C -0.030 4.030 16 N -0.339 5.339 17 C 0.304 3.696 18 O -0.469 6.469 19 C -0.065 4.065 20 C -0.155 4.155 21 C -0.144 4.144 22 C -0.104 4.104 23 C -0.146 4.146 24 C -0.131 4.131 25 C -0.144 4.144 26 C -0.163 4.163 27 C -0.073 4.073 28 C -0.037 4.037 29 O -0.301 6.301 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.210 0.790 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.113 0.887 42 H 0.086 0.914 43 H 0.092 0.908 44 H 0.063 0.937 45 H 0.070 0.930 46 H 0.086 0.914 47 H 0.105 0.895 48 H 0.106 0.894 49 H 0.067 0.933 50 H 0.088 0.912 51 H 0.165 0.835 52 H 0.148 0.852 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.481 -6.805 26.036 27.025 hybrid contribution 0.632 0.722 -1.654 1.912 sum 3.113 -6.083 24.382 25.321 Atomic orbital electron populations 1.22160 0.96803 1.01206 1.00544 1.20501 0.93806 0.94477 0.84888 0.92658 1.42470 1.78041 1.10481 1.05696 1.19584 1.34847 0.94090 0.88448 0.90829 1.25471 1.03172 0.96833 1.01162 1.69822 1.52604 1.10077 1.29220 0.85293 0.77866 0.77291 0.79804 1.22308 1.20432 1.20818 1.22575 0.91137 0.84094 0.98548 0.90539 1.22037 0.95691 0.95795 0.89441 1.48218 1.41739 1.16025 1.27898 1.21501 0.77529 0.86520 0.84041 1.90650 1.54076 1.25235 1.76959 1.20672 0.98590 0.95556 0.91704 1.21904 0.94747 1.01298 0.97563 1.21556 0.95786 1.00226 0.96787 1.21104 0.95095 0.95819 0.98416 1.21588 1.00343 0.95977 0.96725 1.21323 0.96969 0.98080 0.96699 1.21547 1.02085 0.98182 0.92592 1.21976 1.01126 0.93650 0.99520 1.23380 0.95525 0.82785 1.05657 1.23286 0.93039 0.98565 0.88819 1.88067 1.75517 1.23294 1.43204 0.91365 0.94330 0.93439 0.78963 0.94256 0.92667 0.90670 0.92271 0.89387 0.89413 0.90843 0.88690 0.91372 0.90841 0.93684 0.92951 0.91418 0.89464 0.89377 0.93317 0.91203 0.83530 0.85170 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.36 9.35 71.98 0.67 -4.69 16 2 C 0.17 6.99 2.73 44.99 0.12 7.11 16 3 H 0.06 2.27 8.08 -2.38 -0.02 2.25 16 4 N -0.73 -37.26 4.29 -322.94 -1.38 -38.64 16 5 C -0.24 -13.44 9.93 84.03 0.83 -12.61 16 6 H 0.07 4.00 7.83 -2.91 -0.02 3.98 16 7 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 8 N -0.97 -60.24 13.06 21.65 0.28 -59.96 16 9 Si 0.97 47.41 29.55 68.60 2.03 49.44 16 10 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 11 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 13 C 0.10 3.28 2.53 30.69 0.08 3.36 16 14 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 15 C 0.09 3.53 5.84 86.35 0.50 4.03 16 16 N -0.61 -18.32 3.01 -817.36 -2.46 -20.78 16 17 C 0.51 15.95 6.49 87.66 0.57 16.52 16 18 O -0.59 -23.68 15.48 -3.05 -0.05 -23.73 16 19 C -0.06 -1.30 0.49 -52.93 -0.03 -1.33 16 20 C -0.12 -1.76 4.69 30.60 0.14 -1.62 16 21 C -0.11 -1.00 5.71 30.59 0.17 -0.83 16 22 C -0.09 -0.86 3.19 -10.79 -0.03 -0.90 16 23 C -0.11 -1.50 5.71 30.61 0.17 -1.33 16 24 C -0.09 -1.99 4.28 30.61 0.13 -1.86 16 25 C -0.11 -1.20 5.71 30.58 0.17 -1.03 16 26 C -0.13 -2.20 4.64 30.58 0.14 -2.06 16 27 C 0.05 1.06 4.31 86.36 0.37 1.43 16 28 C 0.04 0.86 6.77 72.08 0.49 1.35 16 29 O -0.38 -12.60 9.22 -148.98 -1.37 -13.97 16 30 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.04 1.49 8.14 -2.39 -0.02 1.48 16 32 H 0.05 1.80 7.69 -2.39 -0.02 1.78 16 33 H 0.38 21.11 7.20 -92.70 -0.67 20.44 16 34 H 0.25 15.12 8.31 -92.71 -0.77 14.34 16 35 H 0.05 2.52 7.27 -2.39 -0.02 2.50 16 36 H 0.07 3.05 7.12 -2.39 -0.02 3.04 16 37 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.09 1.12 4.45 -2.39 -0.01 1.11 16 39 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 40 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 44 H 0.04 1.15 8.09 -2.39 -0.02 1.13 16 45 H 0.05 1.26 8.11 -2.38 -0.02 1.24 16 46 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 48 H 0.09 1.41 4.60 -2.39 -0.01 1.40 16 49 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.15 2.22 2.53 -2.39 -0.01 2.22 16 52 H 0.13 2.11 8.14 -2.39 -0.02 2.10 16 53 H 0.07 1.26 7.86 -2.39 -0.02 1.25 16 Total: -1.00 -74.18 386.94 2.26 -71.92 By element: Atomic # 1 Polarization: 33.80 SS G_CDS: 0.23 Total: 34.03 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: 4.99 Total: 1.69 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -3.57 Total: -119.38 kcal Atomic # 8 Polarization: -36.28 SS G_CDS: -1.42 Total: -37.70 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -74.18 2.26 -71.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700614496.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.933 kcal (2) G-P(sol) polarization free energy of solvation -74.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds