Wall clock time and date at job start Tue Mar 31 2020 19:55:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08999 * 109.46905 * 2 1 4 4 N 1.46495 * 109.46764 * 119.99549 * 2 1 3 5 5 C 1.36934 * 120.00322 * 274.99826 * 4 2 1 6 6 H 1.07999 * 120.00024 * 0.02562 * 5 4 2 7 7 C 1.38815 * 120.00166 * 179.97438 * 5 4 2 8 8 N 1.31621 * 119.99961 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00110 * 180.02562 * 7 5 4 10 10 H 1.48506 * 109.46776 * 60.00788 * 9 7 5 11 11 H 1.48494 * 109.47146 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47309 * 300.00937 * 9 7 5 13 13 C 1.52999 * 109.47177 * 239.99936 * 2 1 3 14 14 H 1.09004 * 109.54686 * 185.12781 * 13 2 1 15 15 C 1.53293 * 109.51494 * 65.00334 * 13 2 1 16 16 N 1.47150 * 108.38729 * 187.77233 * 15 13 2 17 17 C 1.34768 * 120.98469 * 230.51059 * 16 15 13 18 18 O 1.21281 * 119.99846 * 354.74992 * 17 16 15 19 19 C 1.50703 * 120.00204 * 174.74845 * 17 16 15 20 20 C 1.53000 * 109.46748 * 300.64185 * 19 17 16 21 21 C 1.53002 * 109.46832 * 179.97438 * 20 19 17 22 22 C 1.52999 * 109.47393 * 0.02562 * 21 20 19 23 23 C 1.52998 * 109.47194 * 59.99242 * 22 21 20 24 24 C 1.52996 * 109.46981 * 180.64666 * 19 17 16 25 25 C 1.53000 * 109.46648 * 299.99667 * 22 21 20 26 26 C 1.52993 * 109.47143 * 60.64288 * 19 17 16 27 27 C 1.47157 * 118.03489 * 50.52662 * 16 15 13 28 28 C 1.53297 * 108.38731 * 309.47366 * 27 16 15 29 29 O 1.42955 * 109.51133 * 305.25260 * 13 2 1 30 30 H 1.08993 * 109.47611 * 300.00085 * 1 2 3 31 31 H 1.09003 * 109.46658 * 60.00666 * 1 2 3 32 32 H 1.08999 * 109.46905 * 180.02562 * 1 2 3 33 33 H 0.96998 * 120.00036 * 95.00853 * 4 2 1 34 34 H 0.96996 * 119.99574 * 179.97438 * 8 7 5 35 35 H 1.08997 * 109.68321 * 68.04386 * 15 13 2 36 36 H 1.09003 * 109.67680 * 307.49492 * 15 13 2 37 37 H 1.08991 * 109.47673 * 300.00080 * 20 19 17 38 38 H 1.09003 * 109.47207 * 60.00456 * 20 19 17 39 39 H 1.09001 * 109.47483 * 240.00305 * 21 20 19 40 40 H 1.09007 * 109.46959 * 120.00589 * 21 20 19 41 41 H 1.08997 * 109.47619 * 179.97438 * 22 21 20 42 42 H 1.09002 * 109.47270 * 180.02562 * 23 22 21 43 43 H 1.09004 * 109.47105 * 60.00746 * 23 22 21 44 44 H 1.08998 * 109.47223 * 299.99651 * 24 19 17 45 45 H 1.08999 * 109.47511 * 60.00100 * 24 19 17 46 46 H 1.09003 * 109.47230 * 180.02562 * 25 22 21 47 47 H 1.09001 * 109.47068 * 299.99758 * 25 22 21 48 48 H 1.08997 * 109.47642 * 300.00232 * 26 19 17 49 49 H 1.08998 * 109.47037 * 60.00364 * 26 19 17 50 50 H 1.09009 * 109.67818 * 69.19144 * 27 16 15 51 51 H 1.08993 * 109.68163 * 189.70437 * 27 16 15 52 52 H 1.08992 * 109.51048 * 172.22613 * 28 27 16 53 53 H 1.09002 * 109.50724 * 292.37298 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3757 6 1 1.8919 1.0404 2.4243 7 6 2.6112 -0.6618 3.5093 8 7 2.9241 -1.9389 3.4503 9 14 2.7889 0.2699 5.1186 10 1 1.4663 0.8066 5.5284 11 1 3.2979 -0.6484 6.1687 12 1 3.7442 1.3925 4.9378 13 6 2.0400 -0.7213 -1.2492 14 1 3.1262 -0.8022 -1.2057 15 6 1.6351 0.0697 -2.4984 16 7 1.9700 -0.7335 -3.6850 17 6 2.6766 -0.2049 -4.7037 18 8 2.9645 0.9732 -4.6949 19 6 3.1090 -1.0778 -5.8536 20 6 3.9882 -2.2145 -5.3284 21 6 4.4267 -3.1010 -6.4957 22 6 3.8404 -2.5550 -7.7992 23 6 4.3427 -1.1277 -8.0259 24 6 3.9035 -0.2410 -6.8583 25 6 2.3131 -2.5498 -7.7085 26 6 1.8744 -1.6639 -6.5413 27 6 1.5101 -2.1307 -3.7268 28 6 1.9212 -2.8144 -2.4178 29 8 1.4659 -2.0289 -1.3134 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 2.2490 -1.6316 1.1527 34 1 3.2474 -2.3961 4.2424 35 1 2.1798 1.0133 -2.5280 36 1 0.5629 0.2647 -2.4777 37 1 4.8677 -1.7969 -4.8384 38 1 3.4222 -2.8106 -4.6126 39 1 4.0692 -4.1179 -6.3341 40 1 5.5149 -3.1045 -6.5605 41 1 4.1532 -3.1863 -8.6309 42 1 3.9246 -0.7385 -8.9543 43 1 5.4308 -1.1314 -8.0905 44 1 3.2772 0.5688 -7.2324 45 1 4.7831 0.1765 -6.3683 46 1 1.8953 -2.1612 -8.6372 47 1 1.9553 -3.5666 -7.5469 48 1 1.3084 -2.2600 -5.8255 49 1 1.2481 -0.8541 -6.9154 50 1 0.4252 -2.1572 -3.8299 51 1 1.9716 -2.6439 -4.5704 52 1 1.4723 -3.8064 -2.3686 53 1 3.0069 -2.9029 -2.3787 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700614497.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:53 Heat of formation + Delta-G solvation = -83.249047 kcal Electronic energy + Delta-G solvation = -31581.769099 eV Core-core repulsion = 27645.652942 eV Total energy + Delta-G solvation = -3936.116157 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.63615 -40.59625 -39.24099 -37.19451 -35.89521 -34.40740 -32.99836 -31.98436 -31.85669 -31.45133 -30.01833 -28.52439 -26.47561 -25.04616 -24.54947 -23.67559 -23.51435 -22.84018 -21.20353 -20.51361 -19.31666 -18.61319 -17.82239 -17.52415 -17.24631 -16.98765 -16.81143 -16.46302 -16.23685 -15.99013 -15.80574 -15.59887 -15.15082 -14.74406 -14.38231 -14.10083 -14.02765 -13.89215 -13.69690 -13.46848 -13.09337 -13.06096 -13.03237 -12.97678 -12.92181 -12.85061 -12.79784 -12.48497 -12.44721 -12.31916 -12.22994 -11.83459 -11.65966 -11.58126 -11.46518 -11.36278 -11.18527 -10.93567 -10.79806 -10.65699 -10.39170 -9.61489 -9.01670 -7.92734 -5.21550 1.46332 1.47856 1.49856 1.55725 1.78821 2.56218 2.76452 3.24585 3.40684 3.48002 3.53672 3.56727 3.86411 3.90597 3.95913 4.03963 4.07511 4.15938 4.26184 4.28957 4.31639 4.33628 4.36603 4.39115 4.41330 4.42868 4.46011 4.46636 4.57605 4.60420 4.72038 4.77761 4.82319 4.93113 5.07068 5.07636 5.09203 5.13053 5.20675 5.24396 5.25355 5.33701 5.33939 5.36754 5.43855 5.47077 5.47643 5.50490 5.60209 6.22953 6.26755 6.29600 7.02059 7.35047 8.10117 8.35607 9.30560 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.023161 B = 0.002661 C = 0.002633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.645380 B =10518.597633 C =10630.447105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.176 3.824 3 H 0.055 0.945 4 N -0.732 5.732 5 C -0.242 4.242 6 H 0.075 0.925 7 C -0.076 4.076 8 N -0.968 5.968 9 Si 0.973 3.027 10 H -0.278 1.278 11 H -0.295 1.295 12 H -0.279 1.279 13 C 0.094 3.906 14 H 0.038 0.962 15 C 0.091 3.909 16 N -0.609 5.609 17 C 0.517 3.483 18 O -0.585 6.585 19 C -0.064 4.064 20 C -0.121 4.121 21 C -0.108 4.108 22 C -0.086 4.086 23 C -0.110 4.110 24 C -0.092 4.092 25 C -0.107 4.107 26 C -0.121 4.121 27 C 0.053 3.947 28 C 0.035 3.965 29 O -0.380 6.380 30 H 0.036 0.964 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.376 0.624 34 H 0.250 0.750 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.048 0.952 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.093 0.907 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.053 0.947 45 H 0.045 0.955 46 H 0.072 0.928 47 H 0.086 0.914 48 H 0.093 0.907 49 H 0.059 0.941 50 H 0.094 0.906 51 H 0.143 0.857 52 H 0.132 0.868 53 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.691 -5.676 -28.536 29.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.067 3.933 3 H 0.073 0.927 4 N -0.372 5.372 5 C -0.373 4.373 6 H 0.093 0.907 7 C -0.268 4.268 8 N -0.619 5.619 9 Si 0.801 3.199 10 H -0.204 1.204 11 H -0.221 1.221 12 H -0.205 1.205 13 C 0.034 3.966 14 H 0.056 0.944 15 C -0.032 4.032 16 N -0.342 5.342 17 C 0.307 3.693 18 O -0.465 6.465 19 C -0.067 4.067 20 C -0.158 4.158 21 C -0.145 4.145 22 C -0.105 4.105 23 C -0.147 4.147 24 C -0.131 4.131 25 C -0.144 4.144 26 C -0.159 4.159 27 C -0.068 4.068 28 C -0.042 4.042 29 O -0.299 6.299 30 H 0.056 0.944 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.208 0.792 34 H 0.059 0.941 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.067 0.933 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.085 0.915 41 H 0.111 0.889 42 H 0.091 0.909 43 H 0.085 0.915 44 H 0.072 0.928 45 H 0.064 0.936 46 H 0.090 0.910 47 H 0.105 0.895 48 H 0.111 0.889 49 H 0.078 0.922 50 H 0.112 0.888 51 H 0.160 0.840 52 H 0.150 0.850 53 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.674 -4.974 -28.274 28.757 hybrid contribution 0.601 0.672 1.413 1.676 sum -1.073 -4.302 -26.860 27.224 Atomic orbital electron populations 1.22201 0.96828 1.01242 1.00406 1.20410 0.93948 0.94373 0.84550 0.92701 1.42502 1.78341 1.10463 1.05913 1.19602 1.35196 0.94185 0.88364 0.90685 1.25551 1.02930 0.96902 1.01399 1.69831 1.52464 1.10191 1.29420 0.85229 0.77956 0.77286 0.79389 1.20383 1.22130 1.20539 1.22512 0.95812 0.83943 0.94332 0.94420 1.22208 1.02180 0.95018 0.83816 1.48203 1.54310 1.13662 1.17998 1.21394 0.76159 0.88051 0.83684 1.90655 1.57536 1.18725 1.79534 1.20675 0.98263 0.95440 0.92301 1.21905 0.98750 0.95743 0.99447 1.21558 1.00919 0.99036 0.93017 1.21100 0.95448 0.95831 0.98086 1.21590 1.01027 0.95084 0.97026 1.21318 0.98721 0.97307 0.95713 1.21543 0.95115 1.00315 0.97450 1.21970 0.94674 1.00090 0.99138 1.23378 1.02130 0.80722 1.00586 1.23279 0.99608 0.96038 0.85255 1.88053 1.67681 1.25658 1.48469 0.94441 0.91295 0.93336 0.79218 0.94080 0.89969 0.89105 0.93314 0.89563 0.89541 0.91541 0.88916 0.90892 0.91488 0.92806 0.93624 0.90960 0.89549 0.88916 0.92197 0.88752 0.83983 0.85048 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.42 9.06 71.98 0.65 -4.77 16 2 C 0.18 7.27 2.77 44.99 0.12 7.39 16 3 H 0.06 2.29 8.08 -2.39 -0.02 2.27 16 4 N -0.73 -38.41 5.10 -322.95 -1.65 -40.06 16 5 C -0.24 -13.79 9.93 84.03 0.83 -12.95 16 6 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 7 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 8 N -0.97 -60.55 13.06 21.65 0.28 -60.27 16 9 Si 0.97 47.13 29.55 68.60 2.03 49.16 16 10 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 11 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 12 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 13 C 0.09 3.30 2.61 30.69 0.08 3.38 16 14 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 15 C 0.09 2.73 5.81 86.35 0.50 3.23 16 16 N -0.61 -15.40 3.01 -817.35 -2.46 -17.87 16 17 C 0.52 14.10 6.49 87.66 0.57 14.67 16 18 O -0.58 -21.03 15.48 -3.03 -0.05 -21.08 16 19 C -0.06 -1.20 0.49 -52.93 -0.03 -1.22 16 20 C -0.12 -1.93 4.69 30.60 0.14 -1.79 16 21 C -0.11 -1.13 5.71 30.59 0.17 -0.96 16 22 C -0.09 -0.80 3.20 -10.79 -0.03 -0.84 16 23 C -0.11 -1.41 5.71 30.61 0.17 -1.23 16 24 C -0.09 -1.83 4.28 30.61 0.13 -1.70 16 25 C -0.11 -0.90 5.71 30.58 0.17 -0.73 16 26 C -0.12 -1.59 4.64 30.58 0.14 -1.45 16 27 C 0.05 0.94 4.31 86.35 0.37 1.32 16 28 C 0.04 0.80 6.77 72.08 0.49 1.28 16 29 O -0.38 -12.65 9.24 -148.98 -1.38 -14.03 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.07 2.05 6.42 -2.39 -0.02 2.03 16 32 H 0.05 1.87 7.56 -2.39 -0.02 1.85 16 33 H 0.38 21.40 7.59 -92.71 -0.70 20.70 16 34 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 35 H 0.08 2.73 7.12 -2.39 -0.02 2.72 16 36 H 0.09 2.50 6.27 -2.39 -0.01 2.49 16 37 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.09 1.22 4.45 -2.39 -0.01 1.21 16 39 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 40 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 43 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.05 1.20 8.09 -2.39 -0.02 1.18 16 45 H 0.04 1.09 8.11 -2.39 -0.02 1.07 16 46 H 0.07 0.55 8.14 -2.39 -0.02 0.54 16 47 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 48 H 0.09 0.98 4.60 -2.39 -0.01 0.97 16 49 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 50 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 51 H 0.14 1.76 2.53 -2.39 -0.01 1.75 16 52 H 0.13 2.22 8.14 -2.39 -0.02 2.20 16 53 H 0.05 1.14 7.87 -2.39 -0.02 1.13 16 Total: -1.00 -74.00 385.10 1.94 -72.05 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: 0.20 Total: 32.42 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: 4.97 Total: -0.33 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -3.83 Total: -118.19 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -1.42 Total: -35.11 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -74.00 1.94 -72.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700614497.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.196 kcal (2) G-P(sol) polarization free energy of solvation -73.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds