Wall clock time and date at job start Tue Mar 31 2020 19:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47160 * 2 1 4 4 N 1.46495 * 109.47522 * 120.00550 * 2 1 3 5 5 C 1.36937 * 119.99822 * 274.99904 * 4 2 1 6 6 H 1.08003 * 120.00303 * 359.97438 * 5 4 2 7 7 C 1.38810 * 120.00179 * 179.97438 * 5 4 2 8 8 N 1.31624 * 119.99771 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00177 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47145 * 359.97438 * 9 7 5 11 11 H 1.48501 * 109.47324 * 120.00243 * 9 7 5 12 12 H 1.48500 * 109.47022 * 240.00053 * 9 7 5 13 13 C 1.53006 * 109.46673 * 240.00519 * 2 1 3 14 14 H 1.08995 * 109.51571 * 64.89616 * 13 2 1 15 15 C 1.53303 * 109.50997 * 185.00135 * 13 2 1 16 16 N 1.47150 * 108.41291 * 172.20301 * 15 13 2 17 17 C 1.34785 * 120.97825 * 129.45362 * 16 15 13 18 18 O 1.21275 * 119.99806 * 355.07073 * 17 16 15 19 19 C 1.50698 * 119.99704 * 175.07878 * 17 16 15 20 20 C 1.53000 * 109.47189 * 308.06415 * 19 17 16 21 21 C 1.52996 * 109.47379 * 180.02562 * 20 19 17 22 22 C 1.53002 * 109.46928 * 0.02562 * 21 20 19 23 23 C 1.52996 * 109.47231 * 59.99974 * 22 21 20 24 24 C 1.52997 * 109.46728 * 188.06894 * 19 17 16 25 25 C 1.53000 * 109.47200 * 299.99769 * 22 21 20 26 26 C 1.52996 * 109.46992 * 60.00270 * 25 22 21 27 27 C 1.47161 * 118.02929 * 309.52984 * 16 15 13 28 28 C 1.53289 * 108.41643 * 50.46863 * 27 16 15 29 29 O 1.42960 * 109.22339 * 307.71972 * 28 27 16 30 30 H 1.09007 * 109.46439 * 299.99941 * 1 2 3 31 31 H 1.09000 * 109.46985 * 59.99317 * 1 2 3 32 32 H 1.08991 * 109.47097 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00609 * 94.99169 * 4 2 1 34 34 H 0.97007 * 119.99771 * 180.02562 * 8 7 5 35 35 H 1.08999 * 109.67678 * 291.94615 * 15 13 2 36 36 H 1.09001 * 109.67997 * 52.46244 * 15 13 2 37 37 H 1.08997 * 109.47578 * 300.00493 * 20 19 17 38 38 H 1.09001 * 109.46793 * 60.00690 * 20 19 17 39 39 H 1.09005 * 109.47374 * 240.00480 * 21 20 19 40 40 H 1.08994 * 109.47308 * 119.99906 * 21 20 19 41 41 H 1.09005 * 109.47113 * 179.97438 * 22 21 20 42 42 H 1.08999 * 109.47254 * 180.02562 * 23 22 21 43 43 H 1.09001 * 109.47217 * 59.99775 * 23 22 21 44 44 H 1.09000 * 109.47414 * 299.99562 * 24 19 17 45 45 H 1.09001 * 109.47422 * 59.99735 * 24 19 17 46 46 H 1.09001 * 109.46915 * 180.02562 * 25 22 21 47 47 H 1.08995 * 109.47413 * 299.99878 * 25 22 21 48 48 H 1.09002 * 109.46910 * 240.00166 * 26 25 22 49 49 H 1.09004 * 109.47402 * 120.00044 * 26 25 22 50 50 H 1.08997 * 109.64965 * 290.74659 * 27 16 15 51 51 H 1.09002 * 109.71360 * 170.23386 * 27 16 15 52 52 H 1.09000 * 109.51438 * 187.79359 * 28 27 16 53 53 H 1.09003 * 109.51440 * 67.64267 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0185 -0.6907 1.1960 5 6 2.1493 -0.0076 2.3756 6 1 1.8928 1.0404 2.4242 7 6 2.6116 -0.6621 3.5091 8 7 2.9246 -1.9392 3.4499 9 14 2.7907 0.2698 5.1181 10 1 2.3779 1.6826 4.9205 11 1 1.9297 -0.3580 6.1524 12 1 4.2076 0.2260 5.5604 13 6 2.0400 -0.7212 -1.2494 14 1 1.7504 -0.1597 -2.1376 15 6 3.5678 -0.8318 -1.1890 16 7 4.0161 -1.6878 -2.2988 17 6 4.9970 -1.2869 -3.1317 18 8 5.4622 -0.1717 -3.0282 19 6 5.5154 -2.2244 -4.1915 20 6 5.8986 -3.5589 -3.5488 21 6 6.4256 -4.5105 -4.6247 22 6 6.3943 -3.8102 -5.9847 23 6 7.2742 -2.5595 -5.9346 24 6 6.7462 -1.6081 -4.8596 25 6 4.9561 -3.4090 -6.3188 26 6 4.4292 -2.4574 -5.2429 27 6 3.3605 -2.9937 -2.4732 28 6 1.8429 -2.7779 -2.4709 29 8 1.4750 -2.0332 -1.3073 30 1 -0.3632 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 2.2491 -1.6318 1.1525 34 1 3.2474 -2.3967 4.2421 35 1 4.0116 0.1589 -1.2870 36 1 3.8665 -1.2755 -0.2393 37 1 6.6733 -3.3926 -2.8003 38 1 5.0218 -3.9980 -3.0729 39 1 5.7990 -5.4018 -4.6601 40 1 7.4503 -4.7960 -4.3870 41 1 6.7702 -4.4880 -6.7512 42 1 7.2515 -2.0604 -6.9033 43 1 8.2988 -2.8454 -5.6966 44 1 6.4732 -0.6574 -5.3176 45 1 7.5209 -1.4417 -4.1111 46 1 4.9338 -2.9104 -7.2878 47 1 4.3293 -4.2999 -6.3545 48 1 3.5520 -2.8964 -4.7675 49 1 4.1566 -1.5064 -5.7007 50 1 3.6383 -3.6558 -1.6531 51 1 3.6671 -3.4354 -3.4214 52 1 1.3377 -3.7437 -2.4598 53 1 1.5525 -2.2246 -3.3641 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700614498.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:59 Heat of formation + Delta-G solvation = -82.667134 kcal Electronic energy + Delta-G solvation = -31854.524932 eV Core-core repulsion = 27918.434009 eV Total energy + Delta-G solvation = -3936.090923 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.61150 -40.57342 -39.21788 -37.17202 -35.93110 -34.21003 -32.99355 -31.94737 -31.85326 -31.32815 -30.12530 -28.88676 -25.97023 -25.16353 -24.57092 -23.65914 -23.49047 -22.79101 -21.22887 -20.50951 -19.36652 -18.63936 -17.78578 -17.45906 -17.29024 -16.96467 -16.66623 -16.48622 -16.22615 -15.89148 -15.68383 -15.63204 -15.10567 -14.82320 -14.38278 -14.05847 -14.00419 -13.91359 -13.60047 -13.39516 -13.09802 -13.06008 -13.03437 -12.98328 -12.92124 -12.84514 -12.80852 -12.52099 -12.49359 -12.36315 -12.14011 -11.79556 -11.70052 -11.53015 -11.44269 -11.35705 -11.10866 -10.96649 -10.79616 -10.64833 -10.40935 -9.59856 -8.96402 -7.91469 -5.18663 1.46537 1.47087 1.49670 1.56705 1.81363 2.56559 2.78492 3.25575 3.42740 3.48277 3.54709 3.66882 3.91016 3.91527 3.93313 4.06914 4.09070 4.16421 4.24664 4.26963 4.31062 4.34583 4.38051 4.38832 4.40785 4.44633 4.45248 4.51399 4.61215 4.70267 4.78793 4.80102 4.83345 4.99060 5.07731 5.08688 5.09684 5.12880 5.19611 5.24778 5.26543 5.33966 5.34572 5.37634 5.44227 5.46875 5.48148 5.52856 5.60570 6.24913 6.31120 6.31946 7.03928 7.37406 8.12510 8.38197 9.31903 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.017923 B = 0.003110 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.878266 B = 9002.245297 C = 9512.188606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.173 3.827 3 H 0.056 0.944 4 N -0.726 5.726 5 C -0.235 4.235 6 H 0.074 0.926 7 C -0.074 4.074 8 N -0.966 5.966 9 Si 0.967 3.033 10 H -0.267 1.267 11 H -0.294 1.294 12 H -0.297 1.297 13 C 0.095 3.905 14 H 0.074 0.926 15 C 0.094 3.906 16 N -0.607 5.607 17 C 0.514 3.486 18 O -0.589 6.589 19 C -0.062 4.062 20 C -0.128 4.128 21 C -0.107 4.107 22 C -0.086 4.086 23 C -0.109 4.109 24 C -0.093 4.093 25 C -0.106 4.106 26 C -0.114 4.114 27 C 0.050 3.950 28 C 0.040 3.960 29 O -0.382 6.382 30 H 0.037 0.963 31 H 0.066 0.934 32 H 0.047 0.953 33 H 0.377 0.623 34 H 0.248 0.752 35 H 0.073 0.927 36 H 0.059 0.941 37 H 0.045 0.955 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.053 0.947 45 H 0.042 0.958 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.059 0.941 50 H 0.072 0.928 51 H 0.145 0.855 52 H 0.132 0.868 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.049 -8.106 -25.614 27.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.064 3.936 3 H 0.074 0.926 4 N -0.367 5.367 5 C -0.367 4.367 6 H 0.092 0.908 7 C -0.267 4.267 8 N -0.617 5.617 9 Si 0.797 3.203 10 H -0.192 1.192 11 H -0.221 1.221 12 H -0.225 1.225 13 C 0.036 3.964 14 H 0.092 0.908 15 C -0.030 4.030 16 N -0.339 5.339 17 C 0.304 3.696 18 O -0.469 6.469 19 C -0.065 4.065 20 C -0.165 4.165 21 C -0.144 4.144 22 C -0.104 4.104 23 C -0.146 4.146 24 C -0.131 4.131 25 C -0.143 4.143 26 C -0.152 4.152 27 C -0.071 4.071 28 C -0.037 4.037 29 O -0.300 6.300 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.066 0.934 33 H 0.210 0.790 34 H 0.057 0.943 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.109 0.891 39 H 0.105 0.895 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.092 0.908 43 H 0.086 0.914 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.092 0.908 47 H 0.106 0.894 48 H 0.105 0.895 49 H 0.078 0.922 50 H 0.091 0.909 51 H 0.162 0.838 52 H 0.150 0.850 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.169 -7.433 -25.300 26.559 hybrid contribution 0.619 0.701 1.656 1.902 sum 3.788 -6.732 -23.644 24.874 Atomic orbital electron populations 1.22135 0.96766 1.01235 1.00452 1.20499 0.93870 0.94452 0.84818 0.92634 1.42511 1.78014 1.10442 1.05765 1.19647 1.34573 0.94079 0.88369 0.90782 1.25465 1.03205 0.96840 1.01142 1.69836 1.52760 1.10077 1.29062 0.85158 0.76586 0.78260 0.80292 1.19169 1.22117 1.22470 1.22561 0.90533 0.84870 0.98445 0.90776 1.22031 0.95822 0.95864 0.89257 1.48232 1.36822 1.19469 1.29417 1.21490 0.78135 0.87766 0.82177 1.90643 1.59810 1.23420 1.73022 1.20658 0.97749 0.94670 0.93436 1.22042 1.02352 0.93449 0.98684 1.21551 1.01858 0.97689 0.93322 1.21105 0.95437 0.96324 0.97562 1.21572 0.99338 0.95710 0.98018 1.21312 0.95096 0.98621 0.98106 1.21552 0.95919 0.99309 0.97527 1.21828 0.96472 1.01061 0.95813 1.23358 0.94177 0.84162 1.05410 1.23288 0.93483 0.98472 0.88490 1.88064 1.71016 1.26889 1.44071 0.94337 0.91494 0.93366 0.79019 0.94267 0.90806 0.92311 0.93582 0.89086 0.89476 0.91576 0.88697 0.90800 0.91434 0.92814 0.93895 0.90802 0.89363 0.89496 0.92225 0.90932 0.83775 0.85009 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.35 9.30 71.98 0.67 -4.68 16 2 C 0.17 7.01 2.80 45.00 0.13 7.14 16 3 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 4 N -0.73 -37.13 4.24 -322.93 -1.37 -38.50 16 5 C -0.23 -13.22 9.93 84.03 0.83 -12.38 16 6 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 7 C -0.07 -4.34 5.50 84.86 0.47 -3.87 16 8 N -0.97 -60.02 13.06 21.65 0.28 -59.73 16 9 Si 0.97 47.34 29.55 68.60 2.03 49.36 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 12 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 13 C 0.10 3.29 2.57 30.70 0.08 3.37 16 14 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 15 C 0.09 3.55 5.83 86.36 0.50 4.05 16 16 N -0.61 -18.41 3.01 -817.33 -2.46 -20.86 16 17 C 0.51 16.08 6.49 87.65 0.57 16.65 16 18 O -0.59 -23.72 15.45 -3.02 -0.05 -23.77 16 19 C -0.06 -1.33 0.49 -52.95 -0.03 -1.35 16 20 C -0.13 -2.33 4.59 30.59 0.14 -2.19 16 21 C -0.11 -1.27 5.71 30.59 0.17 -1.09 16 22 C -0.09 -0.90 3.19 -10.79 -0.03 -0.93 16 23 C -0.11 -1.56 5.71 30.58 0.17 -1.38 16 24 C -0.09 -2.06 4.31 30.58 0.13 -1.92 16 25 C -0.11 -1.02 5.71 30.59 0.17 -0.84 16 26 C -0.11 -1.73 4.72 30.58 0.14 -1.59 16 27 C 0.05 1.10 4.25 86.35 0.37 1.47 16 28 C 0.04 0.86 6.98 72.08 0.50 1.36 16 29 O -0.38 -12.49 9.24 -148.98 -1.38 -13.87 16 30 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.05 1.84 7.56 -2.39 -0.02 1.82 16 33 H 0.38 20.95 7.08 -92.71 -0.66 20.30 16 34 H 0.25 14.99 8.31 -92.70 -0.77 14.22 16 35 H 0.07 3.06 7.06 -2.39 -0.02 3.04 16 36 H 0.06 2.68 6.94 -2.39 -0.02 2.67 16 37 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.09 1.50 4.26 -2.39 -0.01 1.49 16 39 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 42 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.05 1.33 8.01 -2.39 -0.02 1.31 16 45 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 46 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 47 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 48 H 0.09 1.09 5.12 -2.39 -0.01 1.08 16 49 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.07 1.76 7.94 -2.39 -0.02 1.74 16 51 H 0.15 2.16 2.62 -2.39 -0.01 2.16 16 52 H 0.13 2.09 8.14 -2.39 -0.02 2.08 16 53 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -73.76 386.92 2.30 -71.46 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: 0.24 Total: 34.10 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 5.00 Total: 1.81 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -3.55 Total: -119.10 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -1.42 Total: -37.63 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.36 kcal Total: -73.76 2.30 -71.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700614498.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.210 kcal (2) G-P(sol) polarization free energy of solvation -73.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds