Wall clock time and date at job start Tue Mar 31 2020 20:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 119.99908 * 2 1 4 4 C 1.53001 * 109.47555 * 124.99691 * 3 2 1 5 5 O 1.42891 * 109.47179 * 179.97438 * 4 3 2 6 6 C 1.42902 * 114.00017 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47000 * 330.00503 * 6 5 4 8 8 C 1.53005 * 109.47114 * 89.99883 * 6 5 4 9 9 C 1.50697 * 109.47318 * 210.00204 * 6 5 4 10 10 O 1.21276 * 120.00082 * 354.99797 * 9 6 5 11 11 N 1.34781 * 119.99772 * 175.00335 * 9 6 5 12 12 C 1.48107 * 127.84114 * 179.97438 * 11 9 6 13 13 C 1.54318 * 104.71646 * 140.21892 * 12 11 9 14 14 C 1.52992 * 112.07636 * 146.94125 * 13 12 11 15 15 C 1.53758 * 109.08130 * 271.64633 * 13 12 11 16 16 N 1.47194 * 106.40775 * 94.28485 * 15 13 12 17 17 C 1.36943 * 126.70173 * 211.29246 * 16 15 13 18 18 H 1.08003 * 119.99648 * 165.69159 * 17 16 15 19 19 C 1.38804 * 119.99839 * 345.69174 * 17 16 15 20 20 N 1.31622 * 120.00247 * 350.70109 * 19 17 16 21 21 Si 1.86810 * 119.99877 * 170.70063 * 19 17 16 22 22 H 1.48498 * 109.46844 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47269 * 120.00142 * 21 19 17 24 24 H 1.48497 * 109.46750 * 239.99912 * 21 19 17 25 25 C 1.47206 * 106.59519 * 31.55525 * 16 15 13 26 26 C 1.54031 * 106.26556 * 328.36981 * 25 16 15 27 27 C 1.53003 * 112.77079 * 141.67216 * 26 25 16 28 28 C 1.48107 * 127.84501 * 359.97438 * 11 9 6 29 29 H 1.07994 * 120.00139 * 0.02562 * 1 2 3 30 30 H 1.08005 * 119.99271 * 180.02562 * 1 2 3 31 31 H 1.08005 * 120.00410 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46751 * 4.99406 * 3 2 1 33 33 H 1.09000 * 109.47140 * 244.99674 * 3 2 1 34 34 H 1.09004 * 109.46976 * 59.99392 * 4 3 2 35 35 H 1.09000 * 109.46882 * 300.00141 * 4 3 2 36 36 H 1.08996 * 109.46979 * 60.00247 * 8 6 5 37 37 H 1.09003 * 109.47225 * 180.02562 * 8 6 5 38 38 H 1.09003 * 109.47000 * 300.00225 * 8 6 5 39 39 H 1.09004 * 110.38761 * 21.41553 * 12 11 9 40 40 H 1.08996 * 110.39464 * 259.03082 * 12 11 9 41 41 H 1.08999 * 109.47342 * 182.01403 * 14 13 12 42 42 H 1.09002 * 109.47884 * 302.01866 * 14 13 12 43 43 H 1.09005 * 109.47396 * 62.01821 * 14 13 12 44 44 H 1.09001 * 110.06945 * 335.04142 * 15 13 12 45 45 H 1.09004 * 110.06676 * 213.52076 * 15 13 12 46 46 H 0.97001 * 120.00021 * 180.02562 * 20 19 17 47 47 H 1.09001 * 110.06421 * 87.68848 * 25 16 15 48 48 H 1.09000 * 110.06826 * 209.21160 * 25 16 15 49 49 H 1.08998 * 109.47125 * 301.38715 * 27 26 25 50 50 H 1.09003 * 109.46619 * 61.38129 * 27 26 25 51 51 H 1.08997 * 109.47252 * 181.38332 * 27 26 25 52 52 H 1.08993 * 110.39076 * 338.58915 * 28 11 9 53 53 H 1.09002 * 110.38915 * 100.86449 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3333 1.1816 5 8 3.7498 2.5705 1.1812 6 6 4.6885 2.6998 2.2509 7 1 4.3355 2.1357 3.1142 8 6 6.0470 2.1544 1.8061 9 6 4.8283 4.1533 2.6236 10 8 4.2579 5.0036 1.9737 11 7 5.5874 4.5082 3.6792 12 6 5.8446 5.8723 4.1957 13 6 5.8147 5.7222 5.7313 14 6 6.7829 6.6845 6.4221 15 6 4.3701 5.9021 6.2259 16 7 3.7914 4.5519 6.3194 17 6 2.4795 4.2087 6.1288 18 1 2.2064 3.1724 5.9945 19 6 1.5007 5.1927 6.1081 20 7 1.8012 6.4273 6.4515 21 14 -0.2432 4.7647 5.5929 22 1 -0.3197 3.3203 5.2570 23 1 -1.1765 5.0641 6.7084 24 1 -0.6194 5.5698 4.4031 25 6 4.8973 3.6435 6.6642 26 6 6.1618 4.2377 6.0158 27 6 7.4034 4.0936 6.8983 28 6 6.3538 3.6228 4.5861 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5399 -0.9354 0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 3.7399 0.5067 1.0922 35 1 2.4772 1.2358 2.1130 36 1 6.4000 2.7184 0.9428 37 1 6.7629 2.2526 2.6221 38 1 5.9458 1.1030 1.5365 39 1 5.0631 6.5569 3.8659 40 1 6.8225 6.2246 3.8676 41 1 6.7539 6.5184 7.4989 42 1 7.7940 6.5090 6.0545 43 1 6.4907 7.7120 6.2051 44 1 3.8035 6.5035 5.5150 45 1 4.3670 6.3791 7.2060 46 1 1.1171 7.1148 6.4373 47 1 5.0169 3.5939 7.7465 48 1 4.7032 2.6488 6.2629 49 1 7.2300 4.5899 7.8531 50 1 7.6064 3.0365 7.0698 51 1 8.2580 4.5517 6.4006 52 1 5.9569 2.6083 4.5511 53 1 7.4100 3.6262 4.3170 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700622222.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:43 Heat of formation + Delta-G solvation = -30.942830 kcal Electronic energy + Delta-G solvation = -31834.082149 eV Core-core repulsion = 27900.234160 eV Total energy + Delta-G solvation = -3933.847989 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.37314 -38.85822 -37.33283 -35.08816 -34.67041 -33.08155 -31.93493 -31.14338 -30.67749 -29.00448 -26.82330 -25.97895 -25.71555 -24.91959 -23.91912 -22.82076 -22.02221 -20.02821 -19.95228 -19.10794 -17.80332 -17.09728 -16.73849 -16.12043 -15.98930 -15.50952 -15.18925 -14.75140 -14.64538 -14.12151 -13.88525 -13.71098 -13.44006 -13.36077 -13.24708 -13.16052 -12.82957 -12.70000 -12.41331 -12.12550 -12.00253 -11.75280 -11.69614 -11.53460 -11.48299 -11.36983 -11.34816 -11.20585 -10.95714 -10.80943 -10.77486 -10.65042 -10.05070 -9.99934 -9.79596 -9.72541 -9.69876 -9.51364 -9.48660 -9.08568 -8.61939 -8.16968 -6.76160 -5.73906 -3.06493 2.11556 3.01172 3.14656 3.42243 3.48293 3.50787 3.96993 4.51569 4.67030 4.74578 4.85847 4.94518 5.03069 5.05603 5.06589 5.18156 5.22661 5.32726 5.39551 5.42653 5.47286 5.54368 5.57347 5.62485 5.64826 5.68565 5.73396 5.77832 5.88337 5.89202 5.94826 6.00067 6.05950 6.07936 6.11778 6.15935 6.28474 6.31408 6.47188 6.49068 6.49252 6.58083 6.63774 6.66894 6.83308 6.94230 7.22540 7.43067 7.60092 7.78811 8.02993 8.29502 8.67246 9.19781 9.82786 10.54171 11.40105 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009107 B = 0.004987 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.956786 B = 5612.717205 C = 7650.972669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.093 4.093 4 C 0.064 3.936 5 O -0.357 6.357 6 C 0.078 3.922 7 H 0.086 0.914 8 C -0.170 4.170 9 C 0.545 3.455 10 O -0.523 6.523 11 N -0.604 5.604 12 C 0.128 3.872 13 C -0.100 4.100 14 C -0.122 4.122 15 C 0.181 3.819 16 N -0.589 5.589 17 C -0.226 4.226 18 H 0.071 0.929 19 C 0.000 4.000 20 N -0.912 5.912 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.288 1.288 25 C 0.146 3.854 26 C -0.086 4.086 27 C -0.122 4.122 28 C 0.116 3.884 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.048 0.952 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.050 0.950 43 H 0.054 0.946 44 H 0.075 0.925 45 H 0.022 0.978 46 H 0.252 0.748 47 H 0.018 0.982 48 H 0.037 0.963 49 H 0.062 0.938 50 H 0.052 0.948 51 H 0.055 0.945 52 H 0.072 0.928 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.540 -10.269 -6.070 16.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.172 4.172 3 C -0.130 4.130 4 C -0.012 4.012 5 O -0.275 6.275 6 C 0.017 3.983 7 H 0.104 0.896 8 C -0.227 4.227 9 C 0.332 3.668 10 O -0.398 6.398 11 N -0.338 5.338 12 C 0.006 3.994 13 C -0.102 4.102 14 C -0.180 4.180 15 C 0.056 3.944 16 N -0.312 5.312 17 C -0.354 4.354 18 H 0.089 0.911 19 C -0.197 4.197 20 N -0.559 5.559 21 Si 0.735 3.265 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.215 1.215 25 C 0.020 3.980 26 C -0.088 4.088 27 C -0.180 4.180 28 C -0.008 4.008 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.127 0.873 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.040 0.960 46 H 0.063 0.937 47 H 0.036 0.964 48 H 0.055 0.945 49 H 0.081 0.919 50 H 0.071 0.929 51 H 0.074 0.926 52 H 0.090 0.910 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.854 -9.604 -6.715 15.973 hybrid contribution -1.000 -0.477 0.087 1.112 sum 9.854 -10.082 -6.628 15.578 Atomic orbital electron populations 1.23923 0.95962 1.02083 1.00470 1.22786 0.96012 0.97903 1.00485 1.20635 0.98077 0.95998 0.98287 1.22513 0.93764 0.86146 0.98805 1.87994 1.54399 1.37405 1.47728 1.21755 0.90785 0.94426 0.91329 0.89619 1.22274 0.95942 1.01620 1.02894 1.19654 0.77794 0.90035 0.79302 1.90698 1.45145 1.52107 1.51834 1.48447 1.48065 1.08976 1.28343 1.22327 1.00091 0.84369 0.92655 1.22580 0.99790 0.93873 0.93969 1.21619 0.97418 0.98642 1.00324 1.21197 0.86316 0.88205 0.98716 1.44300 1.03248 1.02826 1.80823 1.18887 0.80943 0.92963 1.42654 0.91111 1.24797 0.97777 0.96039 1.01116 1.69921 1.32639 1.01054 1.52259 0.86166 0.84719 0.77653 0.77962 1.20495 1.21775 1.21520 1.21343 0.87049 0.93666 0.95983 1.22830 0.96450 0.95722 0.93828 1.21600 0.95888 1.01114 0.99423 1.22857 0.94750 0.94082 0.89100 0.88298 0.88379 0.87292 0.90328 0.90182 0.93342 0.92788 0.91334 0.90834 0.91563 0.89958 0.92417 0.92173 0.93118 0.92660 0.90675 0.96030 0.93741 0.96401 0.94495 0.91869 0.92921 0.92610 0.90996 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 14.32 29.02 0.42 -1.51 16 2 C -0.15 -1.61 9.52 -36.02 -0.34 -1.96 16 3 C -0.09 -1.15 6.03 -27.88 -0.17 -1.32 16 4 C 0.06 0.88 5.73 37.16 0.21 1.09 16 5 O -0.36 -6.22 9.53 -55.09 -0.52 -6.74 16 6 C 0.08 1.27 2.43 -27.88 -0.07 1.20 16 7 H 0.09 1.34 7.37 -51.93 -0.38 0.96 16 8 C -0.17 -2.00 9.35 37.16 0.35 -1.66 16 9 C 0.54 10.95 7.29 -10.98 -0.08 10.87 16 10 O -0.52 -12.93 16.77 -14.30 -0.24 -13.17 16 11 N -0.60 -10.79 3.32 -167.87 -0.56 -11.35 16 12 C 0.13 2.29 6.05 -2.47 -0.01 2.28 16 13 C -0.10 -1.74 1.06 -152.33 -0.16 -1.90 16 14 C -0.12 -1.72 7.50 37.15 0.28 -1.44 16 15 C 0.18 4.27 4.70 -3.27 -0.02 4.26 16 16 N -0.59 -14.60 3.38 -171.01 -0.58 -15.18 16 17 C -0.23 -6.32 10.28 -15.06 -0.15 -6.47 16 18 H 0.07 1.94 7.85 -52.48 -0.41 1.53 16 19 C 0.00 0.00 5.38 -17.43 -0.09 -0.09 16 20 N -0.91 -27.33 10.87 55.49 0.60 -26.73 16 21 Si 0.90 23.06 29.56 -169.99 -5.03 18.04 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 25 C 0.15 2.87 6.35 -3.12 -0.02 2.85 16 26 C -0.09 -1.33 1.15 -150.81 -0.17 -1.50 16 27 C -0.12 -1.44 7.65 37.16 0.28 -1.16 16 28 C 0.12 1.64 4.53 -1.10 0.00 1.63 16 29 H 0.10 1.05 7.84 -52.49 -0.41 0.64 16 30 H 0.10 0.84 8.06 -52.48 -0.42 0.41 16 31 H 0.11 0.95 8.06 -52.48 -0.42 0.53 16 32 H 0.08 1.09 7.79 -51.93 -0.40 0.68 16 33 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.53 7.87 -51.93 -0.41 0.12 16 35 H 0.05 0.78 8.08 -51.93 -0.42 0.36 16 36 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.07 0.76 5.98 -51.93 -0.31 0.45 16 38 H 0.07 0.64 7.87 -51.93 -0.41 0.24 16 39 H 0.08 1.75 7.16 -51.93 -0.37 1.38 16 40 H 0.06 0.87 7.97 -51.93 -0.41 0.46 16 41 H 0.06 0.84 7.10 -51.93 -0.37 0.47 16 42 H 0.05 0.59 7.16 -51.93 -0.37 0.22 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 2.08 6.02 -51.93 -0.31 1.76 16 45 H 0.02 0.55 7.88 -51.93 -0.41 0.14 16 46 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.02 0.36 7.93 -51.93 -0.41 -0.05 16 48 H 0.04 0.70 7.47 -51.93 -0.39 0.31 16 49 H 0.06 0.77 7.09 -51.93 -0.37 0.40 16 50 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.05 0.57 7.16 -51.93 -0.37 0.19 16 52 H 0.07 0.96 6.08 -51.93 -0.32 0.64 16 53 H 0.06 0.73 7.93 -51.93 -0.41 0.32 16 LS Contribution 408.66 15.07 6.16 6.16 Total: -1.00 -34.52 408.66 -9.27 -43.79 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -9.34 Total: 0.01 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 0.24 Total: 5.17 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.53 Total: -53.26 kcal Atomic # 8 Polarization: -19.14 SS G_CDS: -0.76 Total: -19.91 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.03 Total: 18.04 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.52 -9.27 -43.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700622222.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.848 kcal (2) G-P(sol) polarization free energy of solvation -34.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds