Wall clock time and date at job start Tue Mar 31 2020 20:32:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50702 * 119.99908 * 2 1 4 4 C 1.53001 * 109.47555 * 124.99691 * 3 2 1 5 5 O 1.42891 * 109.47179 * 179.97438 * 4 3 2 6 6 C 1.42902 * 114.00017 * 179.97438 * 5 4 3 7 7 H 1.09004 * 109.47000 * 330.00503 * 6 5 4 8 8 C 1.53005 * 109.47114 * 89.99883 * 6 5 4 9 9 C 1.50697 * 109.47318 * 210.00204 * 6 5 4 10 10 O 1.21276 * 120.00082 * 354.99797 * 9 6 5 11 11 N 1.34781 * 119.99772 * 175.00335 * 9 6 5 12 12 C 1.48107 * 127.84114 * 179.97438 * 11 9 6 13 13 C 1.54318 * 104.71646 * 140.21892 * 12 11 9 14 14 C 1.52992 * 112.07636 * 146.94125 * 13 12 11 15 15 C 1.53758 * 109.08130 * 271.64633 * 13 12 11 16 16 N 1.47194 * 106.40775 * 94.28485 * 15 13 12 17 17 C 1.36943 * 126.70173 * 211.29246 * 16 15 13 18 18 H 1.08003 * 119.99648 * 165.69159 * 17 16 15 19 19 C 1.38804 * 119.99839 * 345.69174 * 17 16 15 20 20 N 1.31622 * 120.00247 * 350.70109 * 19 17 16 21 21 Si 1.86810 * 119.99877 * 170.70063 * 19 17 16 22 22 H 1.48498 * 109.46844 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47269 * 120.00142 * 21 19 17 24 24 H 1.48497 * 109.46750 * 239.99912 * 21 19 17 25 25 C 1.47206 * 106.59519 * 31.55525 * 16 15 13 26 26 C 1.54031 * 106.26556 * 328.36981 * 25 16 15 27 27 C 1.53003 * 112.77079 * 141.67216 * 26 25 16 28 28 C 1.48107 * 127.84501 * 359.97438 * 11 9 6 29 29 H 1.07994 * 120.00139 * 0.02562 * 1 2 3 30 30 H 1.08005 * 119.99271 * 180.02562 * 1 2 3 31 31 H 1.08005 * 120.00410 * 179.97438 * 2 1 3 32 32 H 1.09001 * 109.46751 * 4.99406 * 3 2 1 33 33 H 1.09000 * 109.47140 * 244.99674 * 3 2 1 34 34 H 1.09004 * 109.46976 * 59.99392 * 4 3 2 35 35 H 1.09000 * 109.46882 * 300.00141 * 4 3 2 36 36 H 1.08996 * 109.46979 * 60.00247 * 8 6 5 37 37 H 1.09003 * 109.47225 * 180.02562 * 8 6 5 38 38 H 1.09003 * 109.47000 * 300.00225 * 8 6 5 39 39 H 1.09004 * 110.38761 * 21.41553 * 12 11 9 40 40 H 1.08996 * 110.39464 * 259.03082 * 12 11 9 41 41 H 1.08999 * 109.47342 * 182.01403 * 14 13 12 42 42 H 1.09002 * 109.47884 * 302.01866 * 14 13 12 43 43 H 1.09005 * 109.47396 * 62.01821 * 14 13 12 44 44 H 1.09001 * 110.06945 * 335.04142 * 15 13 12 45 45 H 1.09004 * 110.06676 * 213.52076 * 15 13 12 46 46 H 0.97001 * 120.00021 * 180.02562 * 20 19 17 47 47 H 1.09001 * 110.06421 * 87.68848 * 25 16 15 48 48 H 1.09000 * 110.06826 * 209.21160 * 25 16 15 49 49 H 1.08998 * 109.47125 * 301.38715 * 27 26 25 50 50 H 1.09003 * 109.46619 * 61.38129 * 27 26 25 51 51 H 1.08997 * 109.47252 * 181.38332 * 27 26 25 52 52 H 1.08993 * 110.39076 * 338.58915 * 28 11 9 53 53 H 1.09002 * 110.38915 * 100.86449 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3333 1.1816 5 8 3.7498 2.5705 1.1812 6 6 4.6885 2.6998 2.2509 7 1 4.3355 2.1357 3.1142 8 6 6.0470 2.1544 1.8061 9 6 4.8283 4.1533 2.6236 10 8 4.2579 5.0036 1.9737 11 7 5.5874 4.5082 3.6792 12 6 5.8446 5.8723 4.1957 13 6 5.8147 5.7222 5.7313 14 6 6.7829 6.6845 6.4221 15 6 4.3701 5.9021 6.2259 16 7 3.7914 4.5519 6.3194 17 6 2.4795 4.2087 6.1288 18 1 2.2064 3.1724 5.9945 19 6 1.5007 5.1927 6.1081 20 7 1.8012 6.4273 6.4515 21 14 -0.2432 4.7647 5.5929 22 1 -0.3197 3.3203 5.2570 23 1 -1.1765 5.0641 6.7084 24 1 -0.6194 5.5698 4.4031 25 6 4.8973 3.6435 6.6642 26 6 6.1618 4.2377 6.0158 27 6 7.4034 4.0936 6.8983 28 6 6.3538 3.6228 4.5861 29 1 -0.5400 0.9352 -0.0004 30 1 -0.5399 -0.9354 0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3585 2.1316 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 3.7399 0.5067 1.0922 35 1 2.4772 1.2358 2.1130 36 1 6.4000 2.7184 0.9428 37 1 6.7629 2.2526 2.6221 38 1 5.9458 1.1030 1.5365 39 1 5.0631 6.5569 3.8659 40 1 6.8225 6.2246 3.8676 41 1 6.7539 6.5184 7.4989 42 1 7.7940 6.5090 6.0545 43 1 6.4907 7.7120 6.2051 44 1 3.8035 6.5035 5.5150 45 1 4.3670 6.3791 7.2060 46 1 1.1171 7.1148 6.4373 47 1 5.0169 3.5939 7.7465 48 1 4.7032 2.6488 6.2629 49 1 7.2300 4.5899 7.8531 50 1 7.6064 3.0365 7.0698 51 1 8.2580 4.5517 6.4006 52 1 5.9569 2.6083 4.5511 53 1 7.4100 3.6262 4.3170 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700622222.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:42 Heat of formation + Delta-G solvation = -52.875614 kcal Electronic energy + Delta-G solvation = -31835.033226 eV Core-core repulsion = 27900.234160 eV Total energy + Delta-G solvation = -3934.799066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.80219 -40.24265 -38.70142 -36.44297 -36.04099 -34.71923 -33.33038 -32.46794 -32.30802 -29.99001 -28.28110 -27.72128 -26.86390 -26.50964 -25.13055 -24.05689 -23.56962 -21.57070 -20.95517 -20.40561 -19.25455 -18.84270 -18.22708 -17.49860 -17.12208 -16.81210 -16.79491 -16.49299 -15.78403 -15.62769 -15.38021 -14.97255 -14.88293 -14.60624 -14.49087 -14.39107 -14.26526 -13.79973 -13.63788 -13.52174 -13.36619 -13.22974 -12.92953 -12.90243 -12.87665 -12.75616 -12.56967 -12.50203 -12.41912 -12.15701 -12.06431 -12.01708 -11.93192 -11.80509 -11.45716 -11.15446 -11.04347 -10.98716 -10.74331 -10.48627 -10.31226 -9.64556 -8.82460 -7.95179 -5.26614 1.28327 1.30988 1.36435 1.42440 1.58162 1.80954 2.40749 2.81340 3.25393 3.38318 3.51479 3.70712 3.74847 3.85114 3.90139 3.95113 4.02101 4.10791 4.17051 4.23786 4.37054 4.37763 4.40653 4.44469 4.56880 4.62475 4.66864 4.71393 4.80341 4.83537 4.85922 4.87100 4.90813 4.96751 4.98928 5.04997 5.10289 5.15899 5.17285 5.25981 5.32055 5.35003 5.44390 5.46575 5.53254 5.65853 5.65862 5.81250 5.82762 6.09032 6.19166 6.63212 7.03644 7.19023 7.74159 8.44615 9.17915 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.009107 B = 0.004987 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.956786 B = 5612.717205 C = 7650.972669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.155 4.155 3 C -0.093 4.093 4 C 0.062 3.938 5 O -0.392 6.392 6 C 0.081 3.919 7 H 0.090 0.910 8 C -0.157 4.157 9 C 0.527 3.473 10 O -0.590 6.590 11 N -0.606 5.606 12 C 0.126 3.874 13 C -0.090 4.090 14 C -0.116 4.116 15 C 0.191 3.809 16 N -0.611 5.611 17 C -0.225 4.225 18 H 0.074 0.926 19 C -0.062 4.062 20 N -0.944 5.944 21 Si 0.957 3.043 22 H -0.263 1.263 23 H -0.284 1.284 24 H -0.305 1.305 25 C 0.138 3.862 26 C -0.072 4.072 27 C -0.116 4.116 28 C 0.112 3.888 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.136 0.864 32 H 0.050 0.950 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.039 0.961 36 H 0.060 0.940 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.029 0.971 40 H 0.099 0.901 41 H 0.062 0.938 42 H 0.093 0.907 43 H 0.045 0.955 44 H 0.019 0.981 45 H -0.010 1.010 46 H 0.244 0.756 47 H 0.018 0.982 48 H 0.046 0.954 49 H 0.056 0.944 50 H 0.076 0.924 51 H 0.086 0.914 52 H 0.087 0.913 53 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.386 -13.858 -5.962 21.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.173 4.173 3 C -0.130 4.130 4 C -0.014 4.014 5 O -0.311 6.311 6 C 0.020 3.980 7 H 0.107 0.893 8 C -0.215 4.215 9 C 0.317 3.683 10 O -0.470 6.470 11 N -0.338 5.338 12 C 0.003 3.997 13 C -0.092 4.092 14 C -0.173 4.173 15 C 0.065 3.935 16 N -0.335 5.335 17 C -0.354 4.354 18 H 0.092 0.908 19 C -0.256 4.256 20 N -0.593 5.593 21 Si 0.787 3.213 22 H -0.187 1.187 23 H -0.211 1.211 24 H -0.233 1.233 25 C 0.013 3.987 26 C -0.074 4.074 27 C -0.173 4.173 28 C -0.009 4.009 29 H 0.104 0.896 30 H 0.138 0.862 31 H 0.153 0.847 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.115 0.885 38 H 0.113 0.887 39 H 0.048 0.952 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.112 0.888 43 H 0.064 0.936 44 H 0.038 0.962 45 H 0.008 0.992 46 H 0.053 0.947 47 H 0.036 0.964 48 H 0.064 0.936 49 H 0.075 0.925 50 H 0.095 0.905 51 H 0.105 0.895 52 H 0.105 0.895 53 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.757 -13.256 -6.556 20.892 hybrid contribution -2.230 0.647 0.104 2.324 sum 12.527 -12.609 -6.452 18.909 Atomic orbital electron populations 1.24091 0.96196 1.02562 1.00220 1.22861 0.96036 0.97724 1.00630 1.20645 0.97635 0.96375 0.98388 1.22700 0.94370 0.85909 0.98450 1.87965 1.55293 1.39608 1.48210 1.21881 0.93143 0.91481 0.91469 0.89260 1.22241 0.93178 1.02739 1.03300 1.20639 0.76966 0.91518 0.79225 1.90654 1.47902 1.54193 1.54298 1.48627 1.47518 1.09705 1.27976 1.22345 1.00248 0.84129 0.92951 1.22462 0.96248 0.96854 0.93644 1.21616 0.98427 0.97055 1.00246 1.20949 0.89859 0.87054 0.95669 1.44562 1.03569 1.04376 1.80949 1.19224 0.82747 0.92927 1.40509 0.90804 1.25527 1.01233 0.96248 1.02549 1.70114 1.33054 1.01775 1.54333 0.85315 0.81190 0.77911 0.76924 1.18734 1.21115 1.23313 1.21645 0.87274 0.93410 0.96388 1.22832 0.96274 0.93079 0.95261 1.21611 0.94231 1.03174 0.98330 1.23234 0.96950 0.93787 0.86963 0.89606 0.86243 0.84668 0.93108 0.89436 0.89724 0.94245 0.92113 0.88538 0.88746 0.95180 0.88326 0.91867 0.88812 0.93617 0.96243 0.99237 0.94683 0.96391 0.93556 0.92461 0.90468 0.89527 0.89501 0.86725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.80 14.32 67.78 0.97 -2.83 16 2 C -0.15 -3.01 9.52 25.65 0.24 -2.77 16 3 C -0.09 -2.29 6.03 29.85 0.18 -2.11 16 4 C 0.06 1.63 5.73 71.98 0.41 2.04 16 5 O -0.39 -13.71 9.53 -129.99 -1.24 -14.94 16 6 C 0.08 2.52 2.43 29.85 0.07 2.60 16 7 H 0.09 2.65 7.37 -2.39 -0.02 2.63 16 8 C -0.16 -3.12 9.35 71.98 0.67 -2.45 16 9 C 0.53 21.50 7.29 87.66 0.64 22.14 16 10 O -0.59 -31.07 16.77 15.97 0.27 -30.80 16 11 N -0.61 -20.94 3.32 -803.41 -2.67 -23.61 16 12 C 0.13 4.49 6.05 86.52 0.52 5.02 16 13 C -0.09 -3.05 1.06 -50.77 -0.05 -3.11 16 14 C -0.12 -2.98 7.50 71.98 0.54 -2.44 16 15 C 0.19 9.47 4.70 86.50 0.41 9.88 16 16 N -0.61 -31.16 3.38 -694.96 -2.35 -33.51 16 17 C -0.22 -12.98 10.28 84.03 0.86 -12.12 16 18 H 0.07 4.12 7.85 -2.91 -0.02 4.09 16 19 C -0.06 -3.75 5.38 84.86 0.46 -3.30 16 20 N -0.94 -60.48 10.87 21.65 0.24 -60.25 16 21 Si 0.96 49.63 29.56 68.60 2.03 51.66 16 22 H -0.26 -12.75 7.11 99.48 0.71 -12.04 16 23 H -0.28 -14.32 7.11 99.48 0.71 -13.61 16 24 H -0.31 -16.51 7.11 99.48 0.71 -15.81 16 25 C 0.14 5.19 6.35 86.59 0.55 5.74 16 26 C -0.07 -1.99 1.15 -49.78 -0.06 -2.04 16 27 C -0.12 -2.04 7.65 71.98 0.55 -1.48 16 28 C 0.11 2.66 4.53 87.41 0.40 3.06 16 29 H 0.09 1.87 7.84 -2.91 -0.02 1.85 16 30 H 0.12 1.81 8.06 -2.91 -0.02 1.78 16 31 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 32 H 0.05 1.50 7.79 -2.39 -0.02 1.48 16 33 H 0.09 1.98 8.14 -2.39 -0.02 1.97 16 34 H 0.08 1.59 7.87 -2.38 -0.02 1.58 16 35 H 0.04 1.13 8.08 -2.39 -0.02 1.11 16 36 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.10 1.45 5.98 -2.39 -0.01 1.43 16 38 H 0.09 1.37 7.87 -2.39 -0.02 1.35 16 39 H 0.03 1.38 7.16 -2.38 -0.02 1.36 16 40 H 0.10 2.72 7.97 -2.39 -0.02 2.70 16 41 H 0.06 1.61 7.10 -2.39 -0.02 1.59 16 42 H 0.09 1.65 7.16 -2.39 -0.02 1.64 16 43 H 0.04 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.02 1.16 6.02 -2.39 -0.01 1.14 16 45 H -0.01 -0.56 7.88 -2.38 -0.02 -0.58 16 46 H 0.24 15.34 8.31 -92.71 -0.77 14.57 16 47 H 0.02 0.69 7.93 -2.39 -0.02 0.68 16 48 H 0.05 1.64 7.47 -2.39 -0.02 1.63 16 49 H 0.06 1.12 7.09 -2.39 -0.02 1.10 16 50 H 0.08 1.05 8.14 -2.39 -0.02 1.04 16 51 H 0.09 1.07 7.16 -2.39 -0.02 1.06 16 52 H 0.09 1.86 6.08 -2.39 -0.01 1.85 16 53 H 0.11 1.73 7.93 -2.39 -0.02 1.71 16 Total: -1.00 -86.41 408.66 4.51 -81.90 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 0.86 Total: 13.73 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 7.37 Total: 15.83 kcal Atomic # 7 Polarization: -112.59 SS G_CDS: -4.78 Total: -117.37 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -0.97 Total: -45.75 kcal Atomic # 14 Polarization: 49.63 SS G_CDS: 2.03 Total: 51.66 kcal Total: -86.41 4.51 -81.90 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700622222.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.022 kcal (2) G-P(sol) polarization free energy of solvation -86.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds