Wall clock time and date at job start Tue Mar 31 2020 21:17:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50704 * 119.99935 * 2 1 4 4 H 1.08996 * 109.87097 * 358.99513 * 3 2 1 5 5 O 1.43740 * 109.88021 * 237.83030 * 3 2 1 6 6 C 1.44382 * 106.97657 * 267.08878 * 5 3 2 7 7 C 1.55222 * 103.56840 * 320.01558 * 6 5 3 8 8 C 1.54106 * 109.87597 * 119.99790 * 3 2 1 9 9 H 1.08996 * 110.48665 * 358.58743 * 8 3 2 10 10 C 1.50691 * 110.48858 * 236.07065 * 8 3 2 11 11 O 1.21278 * 120.00299 * 1.84680 * 10 8 3 12 12 N 1.34775 * 120.00181 * 181.84727 * 10 8 3 13 13 C 1.46923 * 120.63354 * 180.02562 * 12 10 8 14 14 C 1.53195 * 108.77800 * 126.36748 * 13 12 10 15 15 C 1.53041 * 109.33975 * 54.62101 * 14 13 12 16 16 C 1.53001 * 109.45954 * 178.63180 * 15 14 13 17 17 N 1.46497 * 109.47102 * 184.21611 * 16 15 14 18 18 C 1.36933 * 120.00091 * 264.16855 * 17 16 15 19 19 H 1.07997 * 120.00309 * 9.22193 * 18 17 16 20 20 C 1.38815 * 120.00060 * 189.22748 * 18 17 16 21 21 N 1.31616 * 119.99914 * 26.77150 * 20 18 17 22 22 Si 1.86800 * 119.99945 * 206.77528 * 20 18 17 23 23 H 1.48503 * 109.47319 * 94.98788 * 22 20 18 24 24 H 1.48501 * 109.47151 * 214.98721 * 22 20 18 25 25 H 1.48504 * 109.47180 * 334.98864 * 22 20 18 26 26 C 1.46499 * 119.99860 * 84.16266 * 17 16 15 27 27 C 1.53000 * 109.46817 * 84.18198 * 26 17 16 28 28 C 1.53041 * 109.53351 * 298.68399 * 15 14 13 29 29 C 1.46926 * 120.63022 * 359.97438 * 12 10 8 30 30 H 1.07999 * 119.99979 * 179.97438 * 1 2 3 31 31 H 1.07998 * 120.00043 * 0.02562 * 1 2 3 32 32 H 1.07994 * 120.00401 * 180.02562 * 2 1 3 33 33 H 1.09000 * 110.61342 * 78.44301 * 6 5 3 34 34 H 1.08998 * 110.61919 * 201.27753 * 6 5 3 35 35 H 1.09005 * 110.89006 * 278.74454 * 7 6 5 36 36 H 1.08996 * 111.02530 * 155.07214 * 7 6 5 37 37 H 1.09002 * 109.59079 * 6.57676 * 13 12 10 38 38 H 1.09007 * 109.70331 * 246.22660 * 13 12 10 39 39 H 1.08999 * 109.49563 * 174.58487 * 14 13 12 40 40 H 1.08996 * 109.49519 * 294.64740 * 14 13 12 41 41 H 1.08993 * 109.46346 * 58.66792 * 15 14 13 42 42 H 1.08994 * 109.47224 * 304.21729 * 16 15 14 43 43 H 1.09000 * 109.47055 * 64.21755 * 16 15 14 44 44 H 0.97004 * 119.99451 * 180.02562 * 21 20 18 45 45 H 1.08999 * 109.47129 * 204.18000 * 26 17 16 46 46 H 1.08990 * 109.47474 * 324.18172 * 26 17 16 47 47 H 1.08998 * 109.47521 * 302.22903 * 27 26 17 48 48 H 1.08999 * 109.47216 * 62.23315 * 27 26 17 49 49 H 1.09000 * 109.47174 * 182.22437 * 27 26 17 50 50 H 1.09010 * 109.47167 * 301.36441 * 28 15 14 51 51 H 1.09006 * 109.52275 * 181.30877 * 28 15 14 52 52 H 1.09004 * 109.58671 * 353.42292 * 29 12 10 53 53 H 1.08997 * 109.58573 * 113.84300 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3611 2.1384 -0.0180 5 8 2.9312 1.3686 -1.1442 6 6 4.2186 0.8670 -0.7253 7 6 4.3957 1.4616 0.6975 8 6 2.9530 1.3966 1.2551 9 1 2.8246 0.5121 1.8789 10 6 2.6334 2.6437 2.0383 11 8 1.7516 3.3867 1.6624 12 7 3.3276 2.9336 3.1566 13 6 3.0273 4.1455 3.9311 14 6 2.7704 3.7484 5.3882 15 6 3.9637 2.9468 5.9130 16 6 3.7250 2.5780 7.3786 17 7 4.9091 1.8985 7.9102 18 6 4.9616 0.5304 7.9313 19 1 4.2028 -0.0471 7.4244 20 6 5.9903 -0.1144 8.6045 21 7 6.5852 0.4769 9.6188 22 14 6.5302 -1.8211 8.0707 23 1 7.6845 -1.7077 7.1433 24 1 6.9296 -2.6097 9.2639 25 1 5.4058 -2.5028 7.3805 26 6 6.0369 2.6829 8.4192 27 6 5.7691 3.0771 9.8730 28 6 4.1263 1.6699 5.0852 29 6 4.3983 2.0431 3.6250 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9352 -0.0004 33 1 4.2118 -0.2223 -0.6861 34 1 5.0042 1.2209 -1.3929 35 1 4.7471 2.4922 0.6471 36 1 5.0718 0.8505 1.2954 37 1 2.1404 4.6299 3.5225 38 1 3.8732 4.8314 3.8829 39 1 2.6412 4.6463 5.9925 40 1 1.8688 3.1386 5.4455 41 1 4.8689 3.5486 5.8330 42 1 3.5363 3.4835 7.9551 43 1 2.8628 1.9151 7.4507 44 1 7.3043 0.0264 10.0889 45 1 6.9476 2.0863 8.3663 46 1 6.1562 3.5821 7.8150 47 1 4.8375 3.6400 9.9312 48 1 5.6893 2.1782 10.4844 49 1 6.5898 3.6938 10.2394 50 1 3.2122 1.0790 5.1453 51 1 4.9619 1.0878 5.4738 52 1 4.4160 1.1403 3.0144 53 1 5.3577 2.5552 3.5515 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717356673.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:17:51 Heat of formation + Delta-G solvation = -50.228906 kcal Electronic energy + Delta-G solvation = -30887.318030 eV Core-core repulsion = 26952.633734 eV Total energy + Delta-G solvation = -3934.684296 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.88535 -40.10447 -38.88362 -37.41505 -34.82458 -34.70132 -33.51656 -32.64012 -31.79924 -30.85131 -29.57179 -28.22304 -25.82358 -24.89564 -24.25227 -23.73651 -23.09316 -21.98628 -21.11869 -20.80039 -19.90230 -18.48951 -18.31423 -17.66887 -17.05942 -16.94503 -16.80113 -16.14513 -15.77214 -15.66052 -15.49449 -14.99128 -14.89788 -14.78930 -14.70096 -14.37711 -14.08594 -14.02255 -13.68734 -13.55932 -13.29768 -13.11295 -12.95113 -12.84180 -12.65149 -12.52320 -12.47216 -12.32774 -12.24127 -12.10934 -11.95012 -11.93241 -11.80008 -11.69862 -11.32558 -11.18142 -11.06710 -10.82891 -10.70738 -10.39955 -10.27912 -9.68188 -8.71241 -7.72936 -5.01630 1.20861 1.50175 1.51973 1.56124 1.61901 1.93803 2.61082 3.01041 3.33729 3.35836 3.41929 3.63205 3.70034 3.84289 3.99994 4.07861 4.13122 4.16851 4.19112 4.19545 4.23677 4.41687 4.49476 4.51032 4.59914 4.73867 4.74574 4.77105 4.81903 4.85774 4.88440 4.89247 4.98712 5.01765 5.03257 5.08980 5.11415 5.13759 5.20316 5.28183 5.38014 5.44046 5.58608 5.62892 5.69134 5.72816 5.75700 5.84069 5.87077 6.21880 6.36010 6.43317 7.05822 7.30572 8.03129 8.44855 9.29455 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.013623 B = 0.003114 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2054.818572 B = 8989.794053 C =10092.873466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.187 4.187 3 C 0.113 3.887 4 H 0.091 0.909 5 O -0.387 6.387 6 C 0.041 3.959 7 C -0.140 4.140 8 C -0.134 4.134 9 H 0.127 0.873 10 C 0.522 3.478 11 O -0.582 6.582 12 N -0.601 5.601 13 C 0.114 3.886 14 C -0.117 4.117 15 C -0.093 4.093 16 C 0.156 3.844 17 N -0.607 5.607 18 C -0.239 4.239 19 H 0.073 0.927 20 C -0.051 4.051 21 N -0.918 5.918 22 Si 0.943 3.057 23 H -0.290 1.290 24 H -0.308 1.308 25 H -0.272 1.272 26 C 0.174 3.826 27 C -0.143 4.143 28 C -0.116 4.116 29 C 0.108 3.892 30 H 0.121 0.879 31 H 0.092 0.908 32 H 0.128 0.872 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.061 0.939 42 H 0.036 0.964 43 H 0.037 0.963 44 H 0.243 0.757 45 H 0.052 0.948 46 H 0.023 0.977 47 H 0.019 0.981 48 H 0.061 0.939 49 H 0.032 0.968 50 H 0.048 0.952 51 H 0.076 0.924 52 H 0.103 0.897 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.579 2.017 -17.516 18.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.205 4.205 3 C 0.055 3.945 4 H 0.109 0.891 5 O -0.307 6.307 6 C -0.035 4.035 7 C -0.178 4.178 8 C -0.155 4.155 9 H 0.144 0.856 10 C 0.311 3.689 11 O -0.463 6.463 12 N -0.332 5.332 13 C -0.008 4.008 14 C -0.155 4.155 15 C -0.114 4.114 16 C 0.030 3.970 17 N -0.329 5.329 18 C -0.369 4.369 19 H 0.091 0.909 20 C -0.246 4.246 21 N -0.566 5.566 22 Si 0.773 3.227 23 H -0.217 1.217 24 H -0.236 1.236 25 H -0.197 1.197 26 C 0.049 3.951 27 C -0.202 4.202 28 C -0.154 4.154 29 C -0.014 4.014 30 H 0.139 0.861 31 H 0.110 0.890 32 H 0.146 0.854 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.136 0.864 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.052 0.948 45 H 0.070 0.930 46 H 0.042 0.958 47 H 0.038 0.962 48 H 0.080 0.920 49 H 0.051 0.949 50 H 0.067 0.933 51 H 0.095 0.905 52 H 0.121 0.879 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -4.980 2.424 -17.807 18.648 hybrid contribution 0.341 -0.926 0.707 1.214 sum -4.639 1.498 -17.100 17.781 Atomic orbital electron populations 1.24092 0.95880 1.02840 0.97698 1.23362 0.96730 0.98230 1.02201 1.21768 0.92089 0.96690 0.83915 0.89086 1.88941 1.22898 1.85372 1.33467 1.23854 0.85455 0.99497 0.94694 1.23334 0.93598 1.03475 0.97386 1.22691 0.98175 0.97199 0.97443 0.85566 1.20655 0.80507 0.87132 0.80637 1.90634 1.33622 1.52524 1.69563 1.48166 1.35818 1.24800 1.24419 1.21607 1.01955 0.86370 0.90872 1.21830 0.98035 1.00703 0.94969 1.21563 0.97607 0.96091 0.96156 1.20837 0.88636 0.95143 0.92401 1.44313 1.15162 1.02216 1.71199 1.19422 1.08740 0.82900 1.25790 0.90930 1.25249 1.01827 1.00337 0.97175 1.70311 1.27396 1.39278 1.19605 0.85601 0.78528 0.81592 0.76967 1.21696 1.23566 1.19733 1.20531 0.91254 0.91837 0.91473 1.22201 0.97131 1.00169 1.00745 1.21789 1.02203 0.97725 0.93709 1.22059 0.89573 0.94320 0.95424 0.86075 0.89010 0.85403 0.90085 0.87134 0.90598 0.86403 0.90282 0.90381 0.89769 0.92648 0.92008 0.94599 0.94491 0.94762 0.92955 0.95843 0.96241 0.91987 0.94942 0.93281 0.90543 0.87850 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 14.32 67.78 0.97 -2.03 16 2 C -0.19 -3.53 8.87 25.65 0.23 -3.30 16 3 C 0.11 2.56 3.45 30.22 0.10 2.66 16 4 H 0.09 2.56 6.11 -2.39 -0.01 2.55 16 5 O -0.39 -8.93 11.18 -148.98 -1.67 -10.59 16 6 C 0.04 0.61 7.66 72.74 0.56 1.17 16 7 C -0.14 -2.09 5.43 31.98 0.17 -1.92 16 8 C -0.13 -2.65 2.11 -10.55 -0.02 -2.67 16 9 H 0.13 2.15 7.23 -2.39 -0.02 2.14 16 10 C 0.52 13.51 6.97 87.65 0.61 14.12 16 11 O -0.58 -19.27 14.67 -3.02 -0.04 -19.32 16 12 N -0.60 -14.18 2.97 -818.99 -2.43 -16.61 16 13 C 0.11 2.69 6.43 86.36 0.56 3.25 16 14 C -0.12 -2.85 5.36 30.67 0.16 -2.68 16 15 C -0.09 -2.70 2.36 -10.77 -0.03 -2.72 16 16 C 0.16 5.67 5.16 86.38 0.45 6.11 16 17 N -0.61 -27.03 2.29 -702.04 -1.61 -28.63 16 18 C -0.24 -11.75 8.00 84.03 0.67 -11.08 16 19 H 0.07 3.52 7.96 -2.91 -0.02 3.50 16 20 C -0.05 -2.64 4.83 84.86 0.41 -2.23 16 21 N -0.92 -50.00 8.63 21.65 0.19 -49.81 16 22 Si 0.94 41.99 29.63 68.60 2.03 44.02 16 23 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.31 -14.30 7.11 99.48 0.71 -13.60 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 C 0.17 7.82 5.62 86.38 0.49 8.31 16 27 C -0.14 -6.35 9.79 71.98 0.70 -5.65 16 28 C -0.12 -3.25 5.00 30.66 0.15 -3.10 16 29 C 0.11 2.29 5.70 86.35 0.49 2.78 16 30 H 0.12 1.64 8.06 -2.91 -0.02 1.61 16 31 H 0.09 1.77 7.85 -2.91 -0.02 1.75 16 32 H 0.13 1.94 8.06 -2.91 -0.02 1.91 16 33 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.27 7.86 -2.38 -0.02 1.25 16 36 H 0.12 1.20 6.95 -2.39 -0.02 1.18 16 37 H 0.08 2.03 7.01 -2.39 -0.02 2.02 16 38 H 0.08 1.65 8.14 -2.38 -0.02 1.64 16 39 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.06 1.85 8.00 -2.39 -0.02 1.83 16 42 H 0.04 1.27 8.01 -2.39 -0.02 1.25 16 43 H 0.04 1.40 7.99 -2.39 -0.02 1.38 16 44 H 0.24 13.12 8.31 -92.70 -0.77 12.35 16 45 H 0.05 2.66 5.99 -2.39 -0.01 2.65 16 46 H 0.02 0.94 7.98 -2.39 -0.02 0.92 16 47 H 0.02 0.78 8.03 -2.39 -0.02 0.76 16 48 H 0.06 3.20 6.10 -2.39 -0.01 3.19 16 49 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 51 H 0.08 2.58 6.56 -2.38 -0.02 2.56 16 52 H 0.10 1.74 4.47 -2.39 -0.01 1.73 16 53 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -62.60 401.42 4.02 -58.58 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: 0.87 Total: 21.34 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: 6.68 Total: 1.02 kcal Atomic # 7 Polarization: -91.20 SS G_CDS: -3.85 Total: -95.05 kcal Atomic # 8 Polarization: -28.20 SS G_CDS: -1.71 Total: -29.91 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.02 kcal Total: -62.60 4.02 -58.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717356673.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.355 kcal (2) G-P(sol) polarization free energy of solvation -62.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds