Wall clock time and date at job start Tue Mar 31 2020 20:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.46775 * 2 1 4 4 O 1.42895 * 109.47339 * 119.99494 * 2 1 3 5 5 C 1.42898 * 114.00230 * 270.00668 * 4 2 1 6 6 C 1.53008 * 109.47251 * 179.97438 * 5 4 2 7 7 C 1.52999 * 117.49841 * 243.74645 * 6 5 4 8 8 C 1.52990 * 117.49996 * 175.08697 * 6 5 4 9 9 C 1.50701 * 109.47366 * 240.00097 * 2 1 3 10 10 O 1.21284 * 119.99880 * 245.27263 * 9 2 1 11 11 N 1.34773 * 120.00280 * 64.99869 * 9 2 1 12 12 C 1.46498 * 120.00364 * 180.02562 * 11 9 2 13 13 C 1.52998 * 109.47367 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.43727 * 59.92439 * 13 12 11 15 15 C 1.53146 * 109.43296 * 179.78941 * 13 12 11 16 16 C 1.53702 * 108.87964 * 66.17692 * 15 13 12 17 17 H 1.08996 * 112.58394 * 187.92532 * 16 15 13 18 18 C 1.54612 * 107.82918 * 312.22406 * 16 15 13 19 19 C 1.54312 * 104.74992 * 88.66221 * 18 16 15 20 20 C 1.54611 * 104.75113 * 0.02562 * 19 18 16 21 21 H 1.09002 * 112.68889 * 147.06940 * 20 19 18 22 22 C 1.53141 * 109.43526 * 300.01402 * 13 12 11 23 23 N 1.48297 * 107.27610 * 64.00311 * 16 15 13 24 24 C 1.36933 * 128.21084 * 107.42303 * 23 16 15 25 25 H 1.08001 * 119.99730 * 162.44543 * 24 23 16 26 26 C 1.38814 * 120.00049 * 342.43834 * 24 23 16 27 27 N 1.31624 * 119.99854 * 2.61800 * 26 24 23 28 28 Si 1.86796 * 120.00187 * 182.62173 * 26 24 23 29 29 H 1.48501 * 109.46904 * 359.97438 * 28 26 24 30 30 H 1.48493 * 109.47440 * 119.99858 * 28 26 24 31 31 H 1.48501 * 109.47012 * 239.99985 * 28 26 24 32 32 H 1.08997 * 109.47484 * 300.00183 * 1 2 3 33 33 H 1.09008 * 109.47177 * 60.00525 * 1 2 3 34 34 H 1.08997 * 109.47158 * 179.97438 * 1 2 3 35 35 H 1.08996 * 109.46921 * 299.99444 * 5 4 2 36 36 H 1.08996 * 109.47508 * 59.99544 * 5 4 2 37 37 H 1.09005 * 115.54615 * 29.41289 * 6 5 4 38 38 H 1.09002 * 117.49478 * 359.97438 * 7 6 5 39 39 H 1.08995 * 117.49953 * 145.01558 * 7 6 5 40 40 H 1.09004 * 117.49693 * 214.97854 * 8 6 5 41 41 H 1.09000 * 117.50058 * 359.96973 * 8 6 5 42 42 H 0.97004 * 120.00088 * 0.02562 * 11 9 2 43 43 H 1.09007 * 109.46613 * 299.99473 * 12 11 9 44 44 H 1.08998 * 109.47328 * 59.99086 * 12 11 9 45 45 H 1.09000 * 109.56454 * 185.99218 * 15 13 12 46 46 H 1.08999 * 109.57458 * 306.35400 * 15 13 12 47 47 H 1.09001 * 110.37714 * 207.48055 * 18 16 15 48 48 H 1.09001 * 110.38065 * 329.84242 * 18 16 15 49 49 H 1.08995 * 110.37873 * 241.18710 * 19 18 16 50 50 H 1.08997 * 110.37703 * 118.82060 * 19 18 16 51 51 H 1.09003 * 109.57151 * 53.63768 * 22 13 12 52 52 H 1.08998 * 109.57471 * 174.00790 * 22 13 12 53 53 H 0.96995 * 119.99748 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0063 -0.6735 1.1668 5 6 2.2000 0.1831 2.2941 6 6 2.7079 -0.6406 3.4793 7 6 1.8105 -0.7275 4.7154 8 6 3.0876 0.1155 4.7539 9 6 2.0324 -0.7104 -1.2305 10 8 2.6487 -1.7492 -1.1217 11 7 1.7920 -0.1942 -2.4520 12 6 2.2799 -0.8851 -3.6482 13 6 1.8747 -0.0952 -4.8943 14 1 2.3085 0.9037 -4.8476 15 6 2.3897 -0.8154 -6.1439 16 6 1.6569 -2.1596 -6.2806 17 1 2.0726 -2.7844 -7.0711 18 6 1.6922 -2.8603 -4.9029 19 6 0.4344 -2.3489 -4.1697 20 6 -0.2430 -1.3878 -5.1736 21 1 -1.3299 -1.3922 -5.0919 22 6 0.3484 0.0145 -4.9541 23 7 0.2216 -1.8584 -6.5007 24 6 -0.5031 -1.9852 -7.6556 25 1 -1.5822 -2.0046 -7.6165 26 6 0.1492 -2.0887 -8.8765 27 7 1.4645 -2.1169 -8.9196 28 14 -0.8394 -2.1880 -10.4582 29 1 -2.2890 -2.1373 -10.1399 30 1 -0.4848 -1.0442 -11.3363 31 1 -0.5306 -3.4620 -11.1559 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8901 34 1 -0.3633 -1.0276 -0.0005 35 1 2.9318 0.9514 2.0450 36 1 1.2537 0.6548 2.5588 37 1 3.2967 -1.5210 3.2219 38 1 0.8585 -0.1975 4.6844 39 1 1.8092 -1.6649 5.2715 40 1 3.9261 -0.2678 5.3355 41 1 2.9761 1.1997 4.7481 42 1 1.2959 0.6348 -2.5392 43 1 3.3662 -0.9635 -3.6046 44 1 1.8450 -1.8835 -3.6939 45 1 2.1958 -0.2027 -7.0243 46 1 3.4611 -0.9917 -6.0483 47 1 1.6462 -3.9424 -5.0261 48 1 2.5918 -2.5775 -4.3561 49 1 0.7151 -1.8144 -3.2622 50 1 -0.2303 -3.1794 -3.9321 51 1 -0.0252 0.4255 -4.0162 52 1 0.0611 0.6651 -5.7801 53 1 1.9202 -2.1888 -9.7728 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724596188.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:49:59 Heat of formation + Delta-G solvation = 42.883175 kcal Electronic energy + Delta-G solvation = -30831.931841 eV Core-core repulsion = 26901.285188 eV Total energy + Delta-G solvation = -3930.646653 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.73369 -40.61413 -39.08397 -37.42366 -36.17771 -34.59850 -33.12508 -32.51495 -32.11030 -31.18897 -28.27199 -28.01525 -25.75792 -24.84474 -24.49284 -23.23426 -22.16579 -21.81952 -21.51328 -20.88348 -20.35420 -18.76487 -18.37321 -18.19201 -17.39508 -16.86880 -16.50747 -16.34102 -15.94444 -15.77690 -15.62915 -15.00134 -14.73787 -14.52538 -14.38047 -14.18727 -13.84156 -13.70184 -13.54654 -13.32527 -13.16257 -13.12378 -13.03676 -12.80708 -12.65539 -12.60798 -12.50239 -12.37061 -12.28861 -11.94516 -11.91292 -11.42524 -11.39325 -11.28982 -11.25051 -11.01141 -10.88614 -10.82800 -10.71136 -10.49699 -10.32755 -9.47135 -8.67771 -7.77955 -5.16968 1.47034 1.48319 1.57386 1.66354 1.91934 2.52060 2.76718 3.03626 3.36497 3.62880 3.73170 3.89116 3.96638 3.97332 3.97956 4.01103 4.06436 4.07868 4.19304 4.27454 4.30540 4.35231 4.40483 4.50451 4.57953 4.63353 4.71196 4.74357 4.76984 4.79404 4.81353 4.85352 4.92152 5.02666 5.02994 5.06297 5.15583 5.20541 5.24115 5.25588 5.27427 5.31591 5.40547 5.50793 5.56603 5.57506 5.62858 5.85162 5.91424 6.16912 6.36225 6.66914 7.14435 7.33261 7.80537 8.61871 9.30287 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.035344 B = 0.002269 C = 0.002239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.014071 B =12338.047491 C =12503.519660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.073 3.927 3 H 0.115 0.885 4 O -0.387 6.387 5 C 0.089 3.911 6 C -0.178 4.178 7 C -0.176 4.176 8 C -0.161 4.161 9 C 0.504 3.496 10 O -0.575 6.575 11 N -0.705 5.705 12 C 0.014 3.986 13 C -0.074 4.074 14 H 0.072 0.928 15 C -0.101 4.101 16 C 0.170 3.830 17 H 0.076 0.924 18 C -0.166 4.166 19 C -0.150 4.150 20 C 0.143 3.857 21 H 0.067 0.933 22 C -0.114 4.114 23 N -0.607 5.607 24 C -0.228 4.228 25 H 0.074 0.926 26 C -0.059 4.059 27 N -0.936 5.936 28 Si 0.968 3.032 29 H -0.269 1.269 30 H -0.295 1.295 31 H -0.298 1.298 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.092 0.908 38 H 0.106 0.894 39 H 0.096 0.904 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.410 0.590 43 H 0.042 0.958 44 H 0.181 0.819 45 H 0.037 0.963 46 H 0.047 0.953 47 H 0.043 0.957 48 H 0.102 0.898 49 H 0.116 0.884 50 H 0.050 0.950 51 H 0.086 0.914 52 H 0.043 0.957 53 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.588 10.431 24.479 26.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 H 0.132 0.868 4 O -0.306 6.306 5 C 0.013 3.987 6 C -0.196 4.196 7 C -0.213 4.213 8 C -0.197 4.197 9 C 0.291 3.709 10 O -0.454 6.454 11 N -0.359 5.359 12 C -0.105 4.105 13 C -0.093 4.093 14 H 0.091 0.909 15 C -0.141 4.141 16 C 0.063 3.937 17 H 0.094 0.906 18 C -0.204 4.204 19 C -0.188 4.188 20 C 0.037 3.963 21 H 0.086 0.914 22 C -0.153 4.153 23 N -0.329 5.329 24 C -0.357 4.357 25 H 0.092 0.908 26 C -0.253 4.253 27 N -0.584 5.584 28 Si 0.798 3.202 29 H -0.194 1.194 30 H -0.222 1.222 31 H -0.225 1.225 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.124 0.876 39 H 0.114 0.886 40 H 0.121 0.879 41 H 0.128 0.872 42 H 0.248 0.752 43 H 0.060 0.940 44 H 0.196 0.804 45 H 0.056 0.944 46 H 0.066 0.934 47 H 0.062 0.938 48 H 0.120 0.880 49 H 0.134 0.866 50 H 0.068 0.932 51 H 0.104 0.896 52 H 0.062 0.938 53 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.131 9.478 24.293 26.077 hybrid contribution -0.210 0.253 -1.658 1.691 sum -0.341 9.731 22.634 24.640 Atomic orbital electron populations 1.22252 0.91675 1.03476 1.05055 1.22012 0.96340 0.96677 0.83720 0.86753 1.88026 1.86889 1.35813 1.19859 1.22272 1.00214 0.91784 0.84451 1.22133 1.05448 1.02699 0.89316 1.23171 0.95544 1.02546 0.99990 1.23080 0.99195 0.99524 0.97951 1.21004 0.79250 0.85339 0.85357 1.90701 1.42118 1.25373 1.87193 1.46078 1.56964 1.27982 1.04914 1.24810 0.99120 1.03809 0.82798 1.21122 0.96388 0.98527 0.93225 0.90927 1.21814 0.97831 0.98422 0.96063 1.21544 0.85198 0.93820 0.93155 0.90619 1.23505 0.98752 0.99583 0.98567 1.23354 0.96253 0.99587 0.99601 1.21777 0.96660 0.92678 0.85233 0.91439 1.22082 0.94660 0.97697 1.00903 1.45343 1.06968 1.74646 1.05899 1.19313 0.90273 1.42064 0.84074 0.90779 1.25587 0.96630 1.02999 1.00094 1.70003 1.07145 1.57415 1.23863 0.85152 0.78420 0.76364 0.80240 1.19351 1.22192 1.22504 0.89290 0.88816 0.92788 0.91937 0.90977 0.88975 0.87588 0.88553 0.87881 0.87166 0.75247 0.94001 0.80393 0.94446 0.93414 0.93775 0.88046 0.86643 0.93157 0.89588 0.93773 0.94563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.28 9.48 71.98 0.68 -1.60 16 2 C 0.07 1.36 3.13 29.85 0.09 1.45 16 3 H 0.11 1.35 7.79 -2.38 -0.02 1.34 16 4 O -0.39 -9.10 9.53 -130.00 -1.24 -10.34 16 5 C 0.09 1.39 6.03 71.98 0.43 1.82 16 6 C -0.18 -2.88 6.05 -10.79 -0.07 -2.95 16 7 C -0.18 -2.15 10.18 30.62 0.31 -1.84 16 8 C -0.16 -1.74 10.25 30.61 0.31 -1.43 16 9 C 0.50 13.39 6.93 87.66 0.61 14.00 16 10 O -0.58 -21.48 16.51 15.94 0.26 -21.21 16 11 N -0.71 -16.13 4.34 -463.06 -2.01 -18.14 16 12 C 0.01 0.43 2.68 86.38 0.23 0.66 16 13 C -0.07 -2.33 2.76 -10.70 -0.03 -2.36 16 14 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 15 C -0.10 -4.19 5.36 30.88 0.17 -4.02 16 16 C 0.17 7.88 3.19 45.43 0.14 8.02 16 17 H 0.08 4.20 6.08 -2.39 -0.01 4.18 16 18 C -0.17 -6.47 5.72 31.59 0.18 -6.29 16 19 C -0.15 -5.20 5.72 31.59 0.18 -5.02 16 20 C 0.14 5.43 4.32 45.45 0.20 5.63 16 21 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 22 C -0.11 -3.59 5.28 30.90 0.16 -3.43 16 23 N -0.61 -29.47 2.83 -637.14 -1.80 -31.27 16 24 C -0.23 -12.37 10.39 84.03 0.87 -11.49 16 25 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 26 C -0.06 -3.28 5.49 84.86 0.47 -2.82 16 27 N -0.94 -54.32 10.55 21.65 0.23 -54.09 16 28 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 29 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 30 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 31 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 32 H 0.09 0.84 7.87 -2.39 -0.02 0.83 16 33 H 0.09 0.90 7.93 -2.38 -0.02 0.88 16 34 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.06 0.83 8.08 -2.39 -0.02 0.81 16 36 H 0.07 0.80 7.60 -2.39 -0.02 0.78 16 37 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.11 1.05 8.03 -2.39 -0.02 1.03 16 39 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 42 H 0.41 6.59 7.10 -92.71 -0.66 5.93 16 43 H 0.04 1.34 8.00 -2.38 -0.02 1.32 16 44 H 0.18 5.90 1.12 -109.55 -0.12 5.78 16 45 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.10 3.67 4.84 -2.39 -0.01 3.66 16 49 H 0.12 3.53 3.94 -2.39 -0.01 3.52 16 50 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 51 H 0.09 1.95 6.71 -2.39 -0.02 1.93 16 52 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 53 H 0.24 13.96 8.31 -92.71 -0.77 13.19 16 Total: -1.00 -71.67 396.54 2.55 -69.11 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.13 Total: 30.29 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: 4.95 Total: -11.66 kcal Atomic # 7 Polarization: -99.91 SS G_CDS: -3.58 Total: -103.49 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.98 Total: -31.56 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -71.67 2.55 -69.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724596188.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.997 kcal (2) G-P(sol) polarization free energy of solvation -71.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds