Wall clock time and date at job start Tue Mar 31 2020 20:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 109.46974 * 2 1 4 4 O 1.42903 * 109.47281 * 240.00165 * 2 1 3 5 5 C 1.42896 * 114.00065 * 90.00136 * 4 2 1 6 6 C 1.53001 * 109.46953 * 180.02562 * 5 4 2 7 7 C 1.52997 * 117.50013 * 243.61870 * 6 5 4 8 8 C 1.52995 * 60.00136 * 252.50932 * 7 6 5 9 9 C 1.50705 * 109.47305 * 119.99538 * 2 1 3 10 10 O 1.21278 * 119.99755 * 119.99789 * 9 2 1 11 11 N 1.34773 * 119.99975 * 300.00403 * 9 2 1 12 12 C 1.46496 * 119.99842 * 180.26953 * 11 9 2 13 13 C 1.53003 * 109.47329 * 179.72274 * 12 11 9 14 14 H 1.08999 * 109.43433 * 300.78458 * 13 12 11 15 15 C 1.53153 * 109.43319 * 60.68938 * 13 12 11 16 16 C 1.53704 * 108.87338 * 66.17329 * 15 13 12 17 17 H 1.08991 * 112.10314 * 187.61944 * 16 15 13 18 18 C 1.54609 * 107.83431 * 311.59915 * 16 15 13 19 19 C 1.55898 * 103.99805 * 88.88086 * 18 16 15 20 20 C 1.54600 * 104.89990 * 359.97438 * 19 18 16 21 21 H 1.09001 * 112.18971 * 146.81573 * 20 19 18 22 22 C 1.53141 * 109.43713 * 180.91169 * 13 12 11 23 23 N 1.48294 * 107.27481 * 64.01003 * 16 15 13 24 24 C 1.36939 * 128.20721 * 107.41107 * 23 16 15 25 25 H 1.08003 * 120.00149 * 34.91680 * 24 23 16 26 26 C 1.38810 * 120.00289 * 214.91080 * 24 23 16 27 27 N 1.31621 * 119.99586 * 5.01091 * 26 24 23 28 28 Si 1.86799 * 120.00419 * 185.00727 * 26 24 23 29 29 H 1.48500 * 109.46939 * 0.02562 * 28 26 24 30 30 H 1.48506 * 109.46959 * 120.00043 * 28 26 24 31 31 H 1.48494 * 109.47178 * 240.00323 * 28 26 24 32 32 H 1.08997 * 109.46718 * 60.00042 * 1 2 3 33 33 H 1.08999 * 109.46835 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47321 * 300.00453 * 1 2 3 35 35 H 1.09005 * 109.46802 * 299.99417 * 5 4 2 36 36 H 1.08990 * 109.47553 * 60.00074 * 5 4 2 37 37 H 1.09004 * 115.54940 * 29.32610 * 6 5 4 38 38 H 1.09003 * 117.49625 * 0.02562 * 7 6 5 39 39 H 1.09002 * 117.49921 * 145.01559 * 7 6 5 40 40 H 1.08997 * 117.49827 * 252.51165 * 8 7 6 41 41 H 1.08997 * 117.50268 * 107.48636 * 8 7 6 42 42 H 0.97002 * 119.99979 * 359.97438 * 11 9 2 43 43 H 1.08997 * 109.47378 * 299.72557 * 12 11 9 44 44 H 1.09003 * 109.47040 * 59.72437 * 12 11 9 45 45 H 1.08998 * 109.56887 * 185.99344 * 15 13 12 46 46 H 1.08997 * 109.56863 * 306.24068 * 15 13 12 47 47 H 1.09003 * 110.37988 * 207.49136 * 18 16 15 48 48 H 1.09003 * 110.37906 * 329.84827 * 18 16 15 49 49 H 1.09005 * 110.29467 * 241.11238 * 19 18 16 50 50 H 1.09001 * 110.31724 * 118.84884 * 19 18 16 51 51 H 1.09002 * 109.56833 * 53.64827 * 22 13 12 52 52 H 1.09004 * 109.57130 * 174.00768 * 22 13 12 53 53 H 0.97005 * 119.99663 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2002 0.1830 -2.2940 6 6 2.7080 -0.6408 -3.4792 7 6 4.1049 -0.3208 -4.0151 8 6 2.8667 0.0760 -4.8215 9 6 2.0324 -0.7103 1.2305 10 8 2.7296 -1.6964 1.1193 11 7 1.7068 -0.2498 2.4546 12 6 2.2000 -0.9369 3.6507 13 6 1.6946 -0.2124 4.9000 14 1 2.0463 0.8193 4.8881 15 6 0.1632 -0.2285 4.9139 16 6 -0.3172 -1.6785 5.0845 17 1 -1.3972 -1.7690 4.9686 18 6 0.4544 -2.5553 4.0714 19 6 1.7391 -2.9826 4.8442 20 6 1.6055 -2.3200 6.2346 21 1 2.0473 -2.9276 7.0243 22 6 2.2294 -0.9178 6.1496 23 7 0.1445 -2.1417 6.4154 24 6 -0.6015 -2.3543 7.5439 25 1 -1.6089 -2.7349 7.4616 26 6 -0.0630 -2.0807 8.7937 27 7 1.1263 -1.5251 8.8905 28 14 -1.0260 -2.5009 10.3381 29 1 -2.3250 -3.1134 9.9602 30 1 -0.2474 -3.4611 11.1611 31 1 -1.2710 -1.2631 11.1209 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 1.2538 0.6546 -2.5589 36 1 2.9320 0.9513 -2.0450 37 1 2.3872 -1.6823 -3.4996 38 1 4.6623 0.4763 -3.5230 39 1 4.7034 -1.1519 -4.3881 40 1 2.6507 -0.4940 -5.7250 41 1 2.6093 1.1345 -4.8603 42 1 1.1493 0.5390 2.5435 43 1 1.8372 -1.9647 3.6550 44 1 3.2900 -0.9364 3.6465 45 1 -0.2007 0.3769 5.7440 46 1 -0.2146 0.1750 3.9745 47 1 -0.1368 -3.4294 3.7983 48 1 0.7085 -1.9755 3.1840 49 1 2.6283 -2.6148 4.3321 50 1 1.7782 -4.0675 4.9427 51 1 3.3140 -1.0041 6.0842 52 1 1.9599 -0.3440 7.0364 53 1 1.5028 -1.3343 9.7639 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724596205.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:04 Heat of formation + Delta-G solvation = 38.046601 kcal Electronic energy + Delta-G solvation = -30855.602527 eV Core-core repulsion = 26924.746144 eV Total energy + Delta-G solvation = -3930.856383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.65197 -40.60208 -39.07897 -37.42858 -36.13909 -34.59773 -33.12948 -32.41995 -32.07443 -31.25489 -28.23156 -28.02885 -25.70530 -24.87304 -24.47197 -23.24502 -22.16715 -21.83076 -21.51159 -20.87742 -20.34078 -18.74634 -18.37308 -18.13337 -17.34778 -16.76902 -16.72089 -16.37728 -15.95386 -15.85637 -15.42165 -15.05026 -14.64152 -14.52989 -14.39506 -14.19461 -13.87574 -13.70710 -13.56929 -13.31936 -13.17572 -13.10205 -13.07331 -12.80013 -12.71328 -12.55837 -12.42240 -12.36153 -12.27009 -11.97194 -11.92863 -11.54808 -11.38921 -11.25764 -11.23962 -11.00124 -10.91657 -10.77206 -10.70071 -10.49183 -10.29810 -9.46629 -8.45897 -7.86294 -5.34166 1.45289 1.47598 1.56858 1.66426 1.93580 2.49558 2.75589 3.04720 3.30973 3.64174 3.73421 3.89037 3.94948 3.95704 3.99509 3.99658 4.07610 4.11389 4.18356 4.26383 4.31578 4.35900 4.41942 4.50255 4.59312 4.64182 4.70276 4.74635 4.77156 4.78693 4.81624 4.85936 4.93938 5.02098 5.04542 5.05764 5.12294 5.21236 5.23290 5.25923 5.27419 5.34054 5.43158 5.51715 5.58931 5.59734 5.65149 5.75459 6.00134 6.17132 6.38179 6.67165 7.12187 7.33431 7.73792 8.66861 9.24493 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.035105 B = 0.002288 C = 0.002257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.421996 B =12237.230591 C =12401.478521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.073 3.927 3 H 0.114 0.886 4 O -0.386 6.386 5 C 0.088 3.912 6 C -0.174 4.174 7 C -0.186 4.186 8 C -0.154 4.154 9 C 0.504 3.496 10 O -0.575 6.575 11 N -0.706 5.706 12 C 0.016 3.984 13 C -0.072 4.072 14 H 0.068 0.932 15 C -0.112 4.112 16 C 0.141 3.859 17 H 0.064 0.936 18 C -0.147 4.147 19 C -0.162 4.162 20 C 0.182 3.818 21 H 0.036 0.964 22 C -0.109 4.109 23 N -0.601 5.601 24 C -0.246 4.246 25 H 0.060 0.940 26 C -0.039 4.039 27 N -0.918 5.918 28 Si 0.965 3.035 29 H -0.270 1.270 30 H -0.294 1.294 31 H -0.290 1.290 32 H 0.088 0.912 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.095 0.905 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.409 0.591 43 H 0.180 0.820 44 H 0.041 0.959 45 H 0.038 0.962 46 H 0.082 0.918 47 H 0.053 0.947 48 H 0.115 0.885 49 H 0.102 0.898 50 H 0.049 0.951 51 H 0.042 0.958 52 H 0.061 0.939 53 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.577 8.997 -23.851 25.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.012 3.988 3 H 0.131 0.869 4 O -0.305 6.305 5 C 0.012 3.988 6 C -0.192 4.192 7 C -0.223 4.223 8 C -0.191 4.191 9 C 0.291 3.709 10 O -0.453 6.453 11 N -0.360 5.360 12 C -0.104 4.104 13 C -0.091 4.091 14 H 0.087 0.913 15 C -0.151 4.151 16 C 0.035 3.965 17 H 0.082 0.918 18 C -0.185 4.185 19 C -0.201 4.201 20 C 0.075 3.925 21 H 0.055 0.945 22 C -0.149 4.149 23 N -0.323 5.323 24 C -0.376 4.376 25 H 0.078 0.922 26 C -0.236 4.236 27 N -0.563 5.563 28 Si 0.794 3.206 29 H -0.194 1.194 30 H -0.222 1.222 31 H -0.217 1.217 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.111 0.889 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.247 0.753 43 H 0.196 0.804 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.100 0.900 47 H 0.072 0.928 48 H 0.132 0.868 49 H 0.120 0.880 50 H 0.068 0.932 51 H 0.060 0.940 52 H 0.080 0.920 53 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.101 8.120 -23.666 25.044 hybrid contribution -0.259 0.234 1.694 1.729 sum 0.842 8.354 -21.972 23.521 Atomic orbital electron populations 1.22267 0.91651 1.03575 1.05038 1.22011 0.96339 0.96641 0.83768 0.86870 1.88020 1.86880 1.35746 1.19869 1.22273 1.00421 0.91722 0.84336 1.22146 1.01566 1.00781 0.94743 1.23154 0.90930 1.03873 1.04350 1.23066 1.00693 1.01764 0.93585 1.20993 0.79930 0.84678 0.85338 1.90696 1.39366 1.28027 1.87249 1.46099 1.52819 1.32272 1.04785 1.24819 0.98232 1.04464 0.82846 1.21099 0.95987 0.98683 0.93336 0.91323 1.22036 0.94818 0.97800 1.00486 1.21752 0.96471 0.92477 0.85825 0.91823 1.23558 0.95841 1.00049 0.99074 1.23726 0.98598 0.99929 0.97800 1.21118 0.85618 0.93518 0.92218 0.94542 1.21937 0.97240 0.98375 0.97310 1.45140 1.03575 1.76454 1.07157 1.19079 0.97792 1.36524 0.84218 0.92202 1.25950 0.98275 0.98704 1.00657 1.70055 1.17551 1.45869 1.22786 0.85240 0.78493 0.76912 0.79953 1.19407 1.22158 1.21716 0.89282 0.92599 0.88898 0.90694 0.92305 0.88384 0.88330 0.88652 0.87507 0.87153 0.75335 0.80430 0.94030 0.94353 0.89957 0.92816 0.86797 0.88024 0.93216 0.93956 0.92041 0.94320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 9.42 71.98 0.68 -1.63 16 2 C 0.07 1.38 3.14 29.85 0.09 1.47 16 3 H 0.11 1.42 7.79 -2.38 -0.02 1.40 16 4 O -0.39 -9.13 9.52 -129.94 -1.24 -10.37 16 5 C 0.09 1.40 6.03 71.98 0.43 1.84 16 6 C -0.17 -2.82 6.06 -10.79 -0.07 -2.89 16 7 C -0.19 -2.61 10.18 30.59 0.31 -2.30 16 8 C -0.15 -1.65 10.25 30.59 0.31 -1.34 16 9 C 0.50 13.54 7.01 87.66 0.61 14.15 16 10 O -0.57 -21.47 16.50 16.01 0.26 -21.20 16 11 N -0.71 -16.57 4.28 -463.07 -1.98 -18.56 16 12 C 0.02 0.49 2.66 86.38 0.23 0.72 16 13 C -0.07 -2.37 2.75 -10.69 -0.03 -2.40 16 14 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 15 C -0.11 -3.73 5.27 30.88 0.16 -3.56 16 16 C 0.14 5.48 4.28 45.43 0.19 5.68 16 17 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 18 C -0.15 -5.09 5.79 32.14 0.19 -4.90 16 19 C -0.16 -6.19 5.75 32.14 0.18 -6.01 16 20 C 0.18 8.38 3.12 45.43 0.14 8.52 16 21 H 0.04 1.96 7.66 -2.39 -0.02 1.94 16 22 C -0.11 -4.58 5.18 30.88 0.16 -4.42 16 23 N -0.60 -29.37 2.73 -637.22 -1.74 -31.10 16 24 C -0.25 -13.45 10.28 84.03 0.86 -12.59 16 25 H 0.06 3.25 7.83 -2.91 -0.02 3.22 16 26 C -0.04 -2.14 5.43 84.86 0.46 -1.67 16 27 N -0.92 -52.45 10.38 21.65 0.22 -52.22 16 28 Si 0.97 44.70 29.56 68.60 2.03 46.72 16 29 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 30 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 31 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 32 H 0.09 0.86 7.87 -2.39 -0.02 0.84 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.09 0.92 7.57 -2.39 -0.02 0.90 16 35 H 0.08 0.84 7.87 -2.38 -0.02 0.82 16 36 H 0.06 0.81 7.82 -2.39 -0.02 0.79 16 37 H 0.10 1.90 8.14 -2.38 -0.02 1.88 16 38 H 0.10 1.28 8.03 -2.39 -0.02 1.26 16 39 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.11 0.84 8.14 -2.39 -0.02 0.83 16 42 H 0.41 6.98 6.78 -92.71 -0.63 6.36 16 43 H 0.18 5.88 1.13 -108.17 -0.12 5.76 16 44 H 0.04 1.35 7.98 -2.39 -0.02 1.33 16 45 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.08 2.01 6.76 -2.39 -0.02 2.00 16 47 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.11 3.51 4.05 -2.39 -0.01 3.50 16 49 H 0.10 3.62 4.83 -2.38 -0.01 3.60 16 50 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 52 H 0.06 3.08 6.67 -2.38 -0.02 3.06 16 53 H 0.25 13.83 8.31 -92.70 -0.77 13.06 16 Total: -1.00 -70.69 395.39 2.66 -68.03 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: 0.16 Total: 30.02 kcal Atomic # 6 Polarization: -16.26 SS G_CDS: 4.94 Total: -11.33 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -3.49 Total: -101.88 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.97 Total: -31.57 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -70.69 2.66 -68.03 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724596205.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.081 kcal (2) G-P(sol) polarization free energy of solvation -70.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.035 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds