Wall clock time and date at job start Tue Mar 31 2020 20:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 119.99642 * 2 1 4 4 C 1.52999 * 109.47165 * 124.99801 * 3 2 1 5 5 O 1.42902 * 109.47114 * 179.97438 * 4 3 2 6 6 C 1.42904 * 113.99736 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47039 * 30.00610 * 6 5 4 8 8 C 1.52997 * 109.47337 * 270.00055 * 6 5 4 9 9 C 1.50697 * 109.46795 * 150.00387 * 6 5 4 10 10 O 1.21284 * 120.00373 * 4.99907 * 9 6 5 11 11 N 1.34774 * 120.00380 * 185.00248 * 9 6 5 12 12 C 1.46502 * 120.00535 * 180.02562 * 11 9 6 13 13 C 1.52997 * 109.47032 * 179.97438 * 12 11 9 14 14 H 1.09005 * 109.39986 * 300.92674 * 13 12 11 15 15 C 1.53147 * 109.43936 * 60.81768 * 13 12 11 16 16 C 1.53706 * 108.97378 * 66.23321 * 15 13 12 17 17 H 1.08995 * 112.09912 * 187.56280 * 16 15 13 18 18 C 1.54613 * 107.83407 * 311.53561 * 16 15 13 19 19 C 1.55899 * 103.99543 * 88.88263 * 18 16 15 20 20 C 1.54612 * 104.89819 * 359.97195 * 19 18 16 21 21 H 1.09006 * 112.18903 * 146.81301 * 20 19 18 22 22 C 1.53695 * 108.37629 * 271.12611 * 20 19 18 23 23 N 1.48297 * 107.27528 * 63.95297 * 16 15 13 24 24 C 1.36935 * 128.20988 * 107.43660 * 23 16 15 25 25 H 1.07997 * 119.99695 * 160.67973 * 24 23 16 26 26 C 1.38807 * 119.99955 * 340.68004 * 24 23 16 27 27 N 1.31622 * 119.99910 * 4.49129 * 26 24 23 28 28 Si 1.86799 * 119.99882 * 184.48682 * 26 24 23 29 29 H 1.48502 * 109.46939 * 90.00659 * 28 26 24 30 30 H 1.48505 * 109.46984 * 209.99895 * 28 26 24 31 31 H 1.48496 * 109.47187 * 330.00344 * 28 26 24 32 32 H 1.07998 * 120.00373 * 0.02562 * 1 2 3 33 33 H 1.08000 * 119.99794 * 180.02562 * 1 2 3 34 34 H 1.07998 * 120.00373 * 179.97438 * 2 1 3 35 35 H 1.08995 * 109.47527 * 4.99512 * 3 2 1 36 36 H 1.08999 * 109.46698 * 244.99676 * 3 2 1 37 37 H 1.09003 * 109.46947 * 59.99703 * 4 3 2 38 38 H 1.08992 * 109.47324 * 299.99882 * 4 3 2 39 39 H 1.09004 * 109.47220 * 300.00463 * 8 6 5 40 40 H 1.09003 * 109.46969 * 60.00126 * 8 6 5 41 41 H 1.08996 * 109.47343 * 180.02562 * 8 6 5 42 42 H 0.97006 * 120.00009 * 359.97438 * 11 9 6 43 43 H 1.08990 * 109.46962 * 59.99544 * 12 11 9 44 44 H 1.09003 * 109.46792 * 299.99761 * 12 11 9 45 45 H 1.09003 * 109.57141 * 306.35928 * 15 13 12 46 46 H 1.09000 * 109.57264 * 186.11166 * 15 13 12 47 47 H 1.08997 * 110.38149 * 207.49073 * 18 16 15 48 48 H 1.08999 * 110.37853 * 329.85759 * 18 16 15 49 49 H 1.09006 * 110.29672 * 241.11754 * 19 18 16 50 50 H 1.08993 * 110.32510 * 118.84948 * 19 18 16 51 51 H 1.09002 * 109.57216 * 167.85067 * 22 20 19 52 52 H 1.08998 * 109.56772 * 288.20793 * 22 20 19 53 53 H 0.97006 * 119.99598 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3333 1.1816 5 8 3.7498 2.5706 1.1813 6 6 4.6885 2.6999 2.2510 7 1 5.0647 1.7143 2.5253 8 6 4.0000 3.3375 3.4594 9 6 5.8363 3.5707 1.8095 10 8 5.8065 4.1087 0.7229 11 7 6.8962 3.7519 2.6221 12 6 8.0119 4.5990 2.1932 13 6 9.0755 4.6366 3.2923 14 1 8.6350 5.0282 4.2092 15 6 9.5993 3.2196 3.5434 16 6 10.3525 2.7363 2.2937 17 1 10.6338 1.6857 2.3651 18 6 9.4594 3.0193 1.0637 19 6 9.8548 4.4653 0.6354 20 6 10.9389 4.8978 1.6493 21 1 11.6833 5.5555 1.2005 22 6 10.2427 5.5496 2.8545 23 7 11.5296 3.6213 2.1193 24 6 12.8491 3.3289 2.3395 25 1 13.6194 3.9373 1.8893 26 6 13.1965 2.2504 3.1414 27 7 12.2612 1.4564 3.6179 28 14 14.9915 1.9260 3.5442 29 1 15.3584 2.6502 4.7877 30 1 15.1992 0.4687 3.7405 31 1 15.8437 2.4012 2.4248 32 1 -0.5400 0.9353 -0.0004 33 1 -0.5400 -0.9353 0.0004 34 1 1.8501 -0.9353 0.0004 35 1 1.3586 2.1317 0.0895 36 1 2.6213 1.4026 -0.9314 37 1 3.7399 0.5067 1.0921 38 1 2.4772 1.2358 2.1130 39 1 3.6238 4.3231 3.1851 40 1 3.1697 2.7076 3.7788 41 1 4.7161 3.4365 4.2752 42 1 6.9200 3.3220 3.4914 43 1 7.6492 5.6092 2.0042 44 1 8.4467 4.1923 1.2801 45 1 8.7622 2.5515 3.7463 46 1 10.2762 3.2265 4.3977 47 1 9.6775 2.3103 0.2651 48 1 8.4062 2.9694 1.3398 49 1 8.9911 5.1275 0.6975 50 1 10.2604 4.4629 -0.3763 51 1 10.9569 5.6660 3.6697 52 1 9.8523 6.5257 2.5667 53 1 12.5040 0.7030 4.1786 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724597575.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:16 Heat of formation + Delta-G solvation = 46.819321 kcal Electronic energy + Delta-G solvation = -30751.053447 eV Core-core repulsion = 26820.577478 eV Total energy + Delta-G solvation = -3930.475969 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.13332 -39.45024 -37.78106 -35.33910 -34.65579 -32.99139 -31.83812 -31.20095 -30.24739 -29.86111 -29.18331 -26.69468 -24.61960 -23.49632 -23.26077 -22.90705 -20.65911 -20.48901 -20.01869 -19.38534 -18.69514 -17.35396 -17.21705 -16.82720 -16.13807 -15.76988 -15.51998 -15.04266 -14.76076 -14.37590 -14.21211 -13.75054 -13.63745 -13.22533 -13.02369 -12.82059 -12.77935 -12.63210 -12.49667 -12.41190 -11.98105 -11.70894 -11.46098 -11.43826 -11.41702 -11.35712 -11.30208 -11.23160 -10.84226 -10.70026 -10.57924 -10.14391 -10.04313 -9.84776 -9.68818 -9.59397 -9.46948 -9.35567 -9.32976 -9.16881 -8.59700 -8.11175 -6.75892 -5.76915 -3.15292 1.89326 2.79697 2.95817 3.37040 3.43429 3.44028 3.84813 4.45690 4.61865 4.63748 4.75624 4.81559 4.89362 4.94277 5.07618 5.16256 5.24785 5.31018 5.35532 5.44823 5.47578 5.50748 5.52243 5.62195 5.66586 5.73563 5.76416 5.85670 5.87327 5.93857 6.07179 6.10033 6.19446 6.27823 6.28986 6.40315 6.45424 6.49699 6.58931 6.64987 6.72277 6.79404 6.85377 6.92932 6.95104 7.07967 7.10938 7.54918 7.62438 7.74658 7.77473 8.28555 8.44054 9.14533 9.75462 10.56509 11.33308 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018434 B = 0.002489 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.527328 B =11246.387656 C =11829.106613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.152 4.152 3 C -0.093 4.093 4 C 0.063 3.937 5 O -0.357 6.357 6 C 0.070 3.930 7 H 0.086 0.914 8 C -0.169 4.169 9 C 0.509 3.491 10 O -0.526 6.526 11 N -0.717 5.717 12 C 0.008 3.992 13 C -0.088 4.088 14 H 0.049 0.951 15 C -0.110 4.110 16 C 0.178 3.822 17 H 0.116 0.884 18 C -0.173 4.173 19 C -0.160 4.160 20 C 0.147 3.853 21 H 0.065 0.935 22 C -0.119 4.119 23 N -0.584 5.584 24 C -0.221 4.221 25 H 0.074 0.926 26 C -0.003 4.003 27 N -0.912 5.912 28 Si 0.908 3.092 29 H -0.289 1.289 30 H -0.292 1.292 31 H -0.282 1.282 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.394 0.606 43 H 0.046 0.954 44 H 0.192 0.808 45 H 0.036 0.964 46 H 0.071 0.929 47 H 0.050 0.950 48 H 0.091 0.909 49 H 0.089 0.911 50 H 0.055 0.945 51 H 0.066 0.934 52 H 0.045 0.955 53 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.200 -0.071 -0.749 19.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.170 4.170 3 C -0.130 4.130 4 C -0.013 4.013 5 O -0.275 6.275 6 C 0.008 3.992 7 H 0.104 0.896 8 C -0.227 4.227 9 C 0.293 3.707 10 O -0.401 6.401 11 N -0.370 5.370 12 C -0.111 4.111 13 C -0.107 4.107 14 H 0.068 0.932 15 C -0.150 4.150 16 C 0.071 3.929 17 H 0.134 0.866 18 C -0.212 4.212 19 C -0.198 4.198 20 C 0.039 3.961 21 H 0.084 0.916 22 C -0.159 4.159 23 N -0.305 5.305 24 C -0.349 4.349 25 H 0.091 0.909 26 C -0.200 4.200 27 N -0.559 5.559 28 Si 0.738 3.262 29 H -0.216 1.216 30 H -0.218 1.218 31 H -0.207 1.207 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.091 0.909 42 H 0.229 0.771 43 H 0.064 0.936 44 H 0.208 0.792 45 H 0.055 0.945 46 H 0.089 0.911 47 H 0.069 0.931 48 H 0.108 0.892 49 H 0.106 0.894 50 H 0.073 0.927 51 H 0.085 0.915 52 H 0.064 0.936 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -19.039 0.302 -1.565 19.105 hybrid contribution 0.852 -0.529 1.247 1.600 sum -18.187 -0.227 -0.318 18.191 Atomic orbital electron populations 1.23892 0.95879 1.01993 1.00962 1.22835 0.96014 0.98105 1.00032 1.20642 0.97879 0.95757 0.98770 1.22534 0.94157 0.86363 0.98295 1.88027 1.53750 1.37090 1.48649 1.21913 0.89591 0.99330 0.88325 0.89642 1.22222 1.01496 1.02399 0.96592 1.20231 0.82995 0.82260 0.85215 1.90701 1.79485 1.48550 1.21401 1.46251 1.19598 1.50902 1.20269 1.25125 0.85855 0.94606 1.05507 1.21504 0.94586 0.98373 0.96188 0.93208 1.22061 0.98362 0.92562 1.01989 1.21587 0.84551 0.98356 0.88409 0.86597 1.23807 1.01021 0.95331 1.01029 1.23633 0.99508 0.97074 0.99562 1.21564 0.92815 0.89780 0.91902 0.91641 1.22338 0.96779 0.96240 1.00548 1.45115 1.01940 1.06182 1.77260 1.18980 0.81085 1.11871 1.22999 0.90851 1.24914 0.97486 0.98963 0.98625 1.69787 1.30588 1.17541 1.37938 0.86183 0.84620 0.77020 0.78332 1.21633 1.21813 1.20715 0.88457 0.88342 0.87107 0.90604 0.89787 0.92927 0.93141 0.91176 0.91415 0.90886 0.77136 0.93553 0.79243 0.94527 0.91064 0.93111 0.89185 0.89372 0.92667 0.91504 0.93625 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.26 14.32 29.01 0.42 -0.85 16 2 C -0.15 -1.12 9.52 -36.02 -0.34 -1.46 16 3 C -0.09 -0.82 6.03 -27.88 -0.17 -0.99 16 4 C 0.06 0.60 5.73 37.16 0.21 0.82 16 5 O -0.36 -4.65 9.53 -55.09 -0.52 -5.18 16 6 C 0.07 0.81 3.13 -27.89 -0.09 0.72 16 7 H 0.09 0.82 7.79 -51.93 -0.40 0.41 16 8 C -0.17 -1.54 9.48 37.16 0.35 -1.18 16 9 C 0.51 7.66 6.95 -10.99 -0.08 7.59 16 10 O -0.53 -10.14 16.51 -14.31 -0.24 -10.38 16 11 N -0.72 -9.99 4.36 -60.30 -0.26 -10.25 16 12 C 0.01 0.12 2.67 -4.04 -0.01 0.11 16 13 C -0.09 -1.47 2.78 -89.75 -0.25 -1.72 16 14 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 15 C -0.11 -2.15 5.24 -26.29 -0.14 -2.29 16 16 C 0.18 3.94 3.15 -65.73 -0.21 3.73 16 17 H 0.12 2.99 6.11 -51.93 -0.32 2.67 16 18 C -0.17 -3.34 5.80 -24.33 -0.14 -3.48 16 19 C -0.16 -2.89 5.75 -24.33 -0.14 -3.03 16 20 C 0.15 2.94 4.28 -65.73 -0.28 2.66 16 21 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 22 C -0.12 -2.13 5.49 -25.58 -0.14 -2.27 16 23 N -0.58 -13.96 2.82 -152.75 -0.43 -14.40 16 24 C -0.22 -5.88 10.38 -15.06 -0.16 -6.03 16 25 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 26 C 0.00 -0.08 5.49 -17.43 -0.10 -0.18 16 27 N -0.91 -25.01 10.57 55.49 0.59 -24.43 16 28 Si 0.91 21.38 29.56 -169.99 -5.02 16.36 16 29 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 30 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 31 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 32 H 0.10 0.61 7.84 -52.49 -0.41 0.19 16 33 H 0.10 0.53 8.06 -52.49 -0.42 0.11 16 34 H 0.11 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.08 0.67 7.79 -51.93 -0.40 0.26 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.47 8.09 -51.93 -0.42 0.05 16 38 H 0.05 0.41 7.87 -51.93 -0.41 0.00 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.50 7.87 -51.93 -0.41 0.09 16 41 H 0.07 0.56 7.92 -51.93 -0.41 0.15 16 42 H 0.39 4.66 7.15 -40.82 -0.29 4.36 16 43 H 0.05 0.75 7.98 -51.93 -0.41 0.34 16 44 H 0.19 3.29 1.14 -162.74 -0.19 3.10 16 45 H 0.04 0.63 6.77 -51.93 -0.35 0.28 16 46 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 47 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 48 H 0.09 1.62 4.07 -51.93 -0.21 1.40 16 49 H 0.09 1.49 4.85 -51.93 -0.25 1.23 16 50 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 51 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 52 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 53 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 399.63 15.07 6.02 6.02 Total: -1.00 -30.71 399.63 -10.21 -40.92 By element: Atomic # 1 Polarization: 18.27 SS G_CDS: -9.09 Total: 9.18 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: -1.25 Total: -7.86 kcal Atomic # 7 Polarization: -48.96 SS G_CDS: -0.11 Total: -49.07 kcal Atomic # 8 Polarization: -14.79 SS G_CDS: -0.76 Total: -15.55 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.71 -10.21 -40.92 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724597575.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.739 kcal (2) G-P(sol) polarization free energy of solvation -30.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds