Wall clock time and date at job start Tue Mar 31 2020 20:50:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 119.99642 * 2 1 4 4 C 1.52999 * 109.47165 * 124.99801 * 3 2 1 5 5 O 1.42902 * 109.47114 * 179.97438 * 4 3 2 6 6 C 1.42904 * 113.99736 * 179.97438 * 5 4 3 7 7 H 1.08997 * 109.47039 * 30.00610 * 6 5 4 8 8 C 1.52997 * 109.47337 * 270.00055 * 6 5 4 9 9 C 1.50697 * 109.46795 * 150.00387 * 6 5 4 10 10 O 1.21284 * 120.00373 * 4.99907 * 9 6 5 11 11 N 1.34774 * 120.00380 * 185.00248 * 9 6 5 12 12 C 1.46502 * 120.00535 * 180.02562 * 11 9 6 13 13 C 1.52997 * 109.47032 * 179.97438 * 12 11 9 14 14 H 1.09005 * 109.39986 * 300.92674 * 13 12 11 15 15 C 1.53147 * 109.43936 * 60.81768 * 13 12 11 16 16 C 1.53706 * 108.97378 * 66.23321 * 15 13 12 17 17 H 1.08995 * 112.09912 * 187.56280 * 16 15 13 18 18 C 1.54613 * 107.83407 * 311.53561 * 16 15 13 19 19 C 1.55899 * 103.99543 * 88.88263 * 18 16 15 20 20 C 1.54612 * 104.89819 * 359.97195 * 19 18 16 21 21 H 1.09006 * 112.18903 * 146.81301 * 20 19 18 22 22 C 1.53695 * 108.37629 * 271.12611 * 20 19 18 23 23 N 1.48297 * 107.27528 * 63.95297 * 16 15 13 24 24 C 1.36935 * 128.20988 * 107.43660 * 23 16 15 25 25 H 1.07997 * 119.99695 * 160.67973 * 24 23 16 26 26 C 1.38807 * 119.99955 * 340.68004 * 24 23 16 27 27 N 1.31622 * 119.99910 * 4.49129 * 26 24 23 28 28 Si 1.86799 * 119.99882 * 184.48682 * 26 24 23 29 29 H 1.48502 * 109.46939 * 90.00659 * 28 26 24 30 30 H 1.48505 * 109.46984 * 209.99895 * 28 26 24 31 31 H 1.48496 * 109.47187 * 330.00344 * 28 26 24 32 32 H 1.07998 * 120.00373 * 0.02562 * 1 2 3 33 33 H 1.08000 * 119.99794 * 180.02562 * 1 2 3 34 34 H 1.07998 * 120.00373 * 179.97438 * 2 1 3 35 35 H 1.08995 * 109.47527 * 4.99512 * 3 2 1 36 36 H 1.08999 * 109.46698 * 244.99676 * 3 2 1 37 37 H 1.09003 * 109.46947 * 59.99703 * 4 3 2 38 38 H 1.08992 * 109.47324 * 299.99882 * 4 3 2 39 39 H 1.09004 * 109.47220 * 300.00463 * 8 6 5 40 40 H 1.09003 * 109.46969 * 60.00126 * 8 6 5 41 41 H 1.08996 * 109.47343 * 180.02562 * 8 6 5 42 42 H 0.97006 * 120.00009 * 359.97438 * 11 9 6 43 43 H 1.08990 * 109.46962 * 59.99544 * 12 11 9 44 44 H 1.09003 * 109.46792 * 299.99761 * 12 11 9 45 45 H 1.09003 * 109.57141 * 306.35928 * 15 13 12 46 46 H 1.09000 * 109.57264 * 186.11166 * 15 13 12 47 47 H 1.08997 * 110.38149 * 207.49073 * 18 16 15 48 48 H 1.08999 * 110.37853 * 329.85759 * 18 16 15 49 49 H 1.09006 * 110.29672 * 241.11754 * 19 18 16 50 50 H 1.08993 * 110.32510 * 118.84948 * 19 18 16 51 51 H 1.09002 * 109.57216 * 167.85067 * 22 20 19 52 52 H 1.08998 * 109.56772 * 288.20793 * 22 20 19 53 53 H 0.97006 * 119.99598 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0350 1.3333 1.1816 5 8 3.7498 2.5706 1.1813 6 6 4.6885 2.6999 2.2510 7 1 5.0647 1.7143 2.5253 8 6 4.0000 3.3375 3.4594 9 6 5.8363 3.5707 1.8095 10 8 5.8065 4.1087 0.7229 11 7 6.8962 3.7519 2.6221 12 6 8.0119 4.5990 2.1932 13 6 9.0755 4.6366 3.2923 14 1 8.6350 5.0282 4.2092 15 6 9.5993 3.2196 3.5434 16 6 10.3525 2.7363 2.2937 17 1 10.6338 1.6857 2.3651 18 6 9.4594 3.0193 1.0637 19 6 9.8548 4.4653 0.6354 20 6 10.9389 4.8978 1.6493 21 1 11.6833 5.5555 1.2005 22 6 10.2427 5.5496 2.8545 23 7 11.5296 3.6213 2.1193 24 6 12.8491 3.3289 2.3395 25 1 13.6194 3.9373 1.8893 26 6 13.1965 2.2504 3.1414 27 7 12.2612 1.4564 3.6179 28 14 14.9915 1.9260 3.5442 29 1 15.3584 2.6502 4.7877 30 1 15.1992 0.4687 3.7405 31 1 15.8437 2.4012 2.4248 32 1 -0.5400 0.9353 -0.0004 33 1 -0.5400 -0.9353 0.0004 34 1 1.8501 -0.9353 0.0004 35 1 1.3586 2.1317 0.0895 36 1 2.6213 1.4026 -0.9314 37 1 3.7399 0.5067 1.0921 38 1 2.4772 1.2358 2.1130 39 1 3.6238 4.3231 3.1851 40 1 3.1697 2.7076 3.7788 41 1 4.7161 3.4365 4.2752 42 1 6.9200 3.3220 3.4914 43 1 7.6492 5.6092 2.0042 44 1 8.4467 4.1923 1.2801 45 1 8.7622 2.5515 3.7463 46 1 10.2762 3.2265 4.3977 47 1 9.6775 2.3103 0.2651 48 1 8.4062 2.9694 1.3398 49 1 8.9911 5.1275 0.6975 50 1 10.2604 4.4629 -0.3763 51 1 10.9569 5.6660 3.6697 52 1 9.8523 6.5257 2.5667 53 1 12.5040 0.7030 4.1786 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724597575.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:15 Heat of formation + Delta-G solvation = 30.102619 kcal Electronic energy + Delta-G solvation = -30751.778338 eV Core-core repulsion = 26820.577478 eV Total energy + Delta-G solvation = -3931.200860 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.59202 -40.58746 -38.77073 -36.16697 -35.95349 -34.64991 -33.04510 -32.52305 -31.77488 -31.52320 -29.88896 -28.24226 -25.87553 -24.84414 -24.78144 -23.76081 -22.11941 -21.66385 -20.98627 -20.67916 -20.25340 -18.81964 -18.35881 -17.98037 -17.30605 -16.84744 -16.66581 -16.40630 -16.00507 -15.72913 -15.41667 -15.02142 -14.55785 -14.50970 -14.35162 -14.19652 -14.02839 -13.69213 -13.56933 -13.28115 -13.24798 -13.17459 -13.07171 -12.98905 -12.92190 -12.61777 -12.39845 -12.32304 -12.16985 -12.08711 -11.96279 -11.94994 -11.42849 -11.22721 -11.06408 -10.95267 -10.92427 -10.78720 -10.44275 -10.38296 -10.25038 -9.45805 -8.64905 -7.78836 -5.17363 1.35201 1.47739 1.48653 1.56212 1.65864 1.97577 2.52016 2.95834 3.35567 3.64434 3.72771 3.95197 3.96015 3.98645 4.00776 4.05343 4.12523 4.16884 4.25843 4.28230 4.31392 4.44092 4.47012 4.49035 4.57107 4.63773 4.69971 4.74672 4.79352 4.81733 4.90822 4.94951 5.00656 5.05794 5.08108 5.12544 5.17192 5.20053 5.20854 5.31295 5.39294 5.51208 5.55806 5.57612 5.64040 5.74658 5.86392 5.86789 5.93822 6.13680 6.37301 6.64661 7.15587 7.31046 7.80449 8.62878 9.29380 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018434 B = 0.002489 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.527328 B =11246.387656 C =11829.106613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.162 4.162 3 C -0.092 4.092 4 C 0.060 3.940 5 O -0.387 6.387 6 C 0.070 3.930 7 H 0.109 0.891 8 C -0.163 4.163 9 C 0.506 3.494 10 O -0.573 6.573 11 N -0.708 5.708 12 C 0.016 3.984 13 C -0.076 4.076 14 H 0.072 0.928 15 C -0.099 4.099 16 C 0.172 3.828 17 H 0.074 0.926 18 C -0.164 4.164 19 C -0.149 4.149 20 C 0.139 3.861 21 H 0.065 0.935 22 C -0.115 4.115 23 N -0.607 5.607 24 C -0.233 4.233 25 H 0.070 0.930 26 C -0.054 4.054 27 N -0.931 5.931 28 Si 0.967 3.033 29 H -0.289 1.289 30 H -0.296 1.296 31 H -0.276 1.276 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.119 0.881 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.056 0.944 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.407 0.593 43 H 0.053 0.947 44 H 0.177 0.823 45 H 0.057 0.943 46 H 0.032 0.968 47 H 0.038 0.962 48 H 0.108 0.892 49 H 0.111 0.889 50 H 0.056 0.944 51 H 0.046 0.954 52 H 0.077 0.923 53 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.080 0.317 -0.063 21.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.181 4.181 3 C -0.129 4.129 4 C -0.016 4.016 5 O -0.306 6.306 6 C 0.009 3.991 7 H 0.126 0.874 8 C -0.221 4.221 9 C 0.292 3.708 10 O -0.451 6.451 11 N -0.362 5.362 12 C -0.104 4.104 13 C -0.095 4.095 14 H 0.090 0.910 15 C -0.138 4.138 16 C 0.066 3.934 17 H 0.092 0.908 18 C -0.202 4.202 19 C -0.187 4.187 20 C 0.032 3.968 21 H 0.083 0.917 22 C -0.155 4.155 23 N -0.329 5.329 24 C -0.362 4.362 25 H 0.088 0.912 26 C -0.248 4.248 27 N -0.579 5.579 28 Si 0.796 3.204 29 H -0.216 1.216 30 H -0.223 1.223 31 H -0.201 1.201 32 H 0.117 0.883 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.244 0.756 43 H 0.071 0.929 44 H 0.193 0.807 45 H 0.076 0.924 46 H 0.051 0.949 47 H 0.057 0.943 48 H 0.125 0.875 49 H 0.128 0.872 50 H 0.075 0.925 51 H 0.065 0.935 52 H 0.096 0.904 53 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -20.933 0.696 -0.863 20.962 hybrid contribution 1.410 -0.653 0.980 1.837 sum -19.523 0.043 0.117 19.523 Atomic orbital electron populations 1.24074 0.95710 1.02818 0.99541 1.22822 0.96294 0.97648 1.01287 1.20620 0.97720 0.96580 0.98008 1.22708 0.94285 0.85287 0.99345 1.87995 1.54246 1.38781 1.49573 1.22013 0.88583 0.99807 0.88663 0.87352 1.22212 1.02352 1.01819 0.95718 1.20910 0.83615 0.81851 0.84428 1.90679 1.80474 1.50572 1.23420 1.46117 1.18857 1.50403 1.20776 1.24771 0.86066 0.95224 1.04296 1.21383 0.94406 0.96179 0.97528 0.90968 1.21848 0.97963 0.94989 0.99048 1.21487 0.84950 0.96133 0.90872 0.90777 1.23755 1.01302 0.95883 0.99256 1.23587 0.99639 0.96505 0.98961 1.21792 0.93335 0.88511 0.93117 0.91722 1.22253 0.96606 0.97841 0.98753 1.45315 1.01605 1.08304 1.77645 1.19233 0.82630 1.11674 1.22667 0.91206 1.25570 1.00794 0.99248 0.99195 1.69984 1.31747 1.17684 1.38457 0.85261 0.80873 0.76278 0.77969 1.21635 1.22300 1.20086 0.88250 0.86940 0.86299 0.90951 0.91249 0.92376 0.91289 0.92501 0.89401 0.89228 0.75596 0.92889 0.80716 0.92414 0.94871 0.94350 0.87496 0.87180 0.92540 0.93529 0.90448 0.94460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 14.32 67.78 0.97 -1.14 16 2 C -0.16 -2.16 9.52 25.65 0.24 -1.91 16 3 C -0.09 -1.54 6.03 29.85 0.18 -1.36 16 4 C 0.06 1.04 5.73 71.98 0.41 1.45 16 5 O -0.39 -9.55 9.53 -129.99 -1.24 -10.79 16 6 C 0.07 1.47 3.13 29.85 0.09 1.56 16 7 H 0.11 1.74 7.79 -2.39 -0.02 1.72 16 8 C -0.16 -2.47 9.48 71.98 0.68 -1.79 16 9 C 0.51 14.25 6.95 87.66 0.61 14.86 16 10 O -0.57 -21.48 16.51 15.95 0.26 -21.21 16 11 N -0.71 -17.83 4.36 -463.07 -2.02 -19.85 16 12 C 0.02 0.47 2.67 86.38 0.23 0.70 16 13 C -0.08 -2.39 2.78 -10.23 -0.03 -2.42 16 14 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 15 C -0.10 -3.81 5.24 30.88 0.16 -3.65 16 16 C 0.17 7.73 3.15 45.43 0.14 7.87 16 17 H 0.07 3.97 6.11 -2.39 -0.01 3.96 16 18 C -0.16 -6.22 5.80 32.15 0.19 -6.03 16 19 C -0.15 -5.21 5.75 32.15 0.18 -5.03 16 20 C 0.14 5.45 4.28 45.43 0.19 5.65 16 21 H 0.06 2.50 8.14 -2.38 -0.02 2.48 16 22 C -0.11 -3.91 5.49 31.34 0.17 -3.73 16 23 N -0.61 -29.46 2.82 -637.20 -1.80 -31.26 16 24 C -0.23 -12.65 10.38 84.03 0.87 -11.78 16 25 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 26 C -0.05 -2.94 5.49 84.86 0.47 -2.48 16 27 N -0.93 -52.66 10.57 21.65 0.23 -52.43 16 28 Si 0.97 44.87 29.56 68.60 2.03 46.90 16 29 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 30 H -0.30 -13.85 7.11 99.48 0.71 -13.15 16 31 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 32 H 0.10 1.08 7.84 -2.91 -0.02 1.05 16 33 H 0.11 0.96 8.06 -2.91 -0.02 0.94 16 34 H 0.12 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.07 1.23 7.79 -2.39 -0.02 1.21 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.06 0.93 8.09 -2.39 -0.02 0.91 16 38 H 0.07 0.93 7.87 -2.39 -0.02 0.91 16 39 H 0.06 1.02 8.14 -2.38 -0.02 1.01 16 40 H 0.09 0.99 7.87 -2.39 -0.02 0.97 16 41 H 0.09 1.05 7.92 -2.39 -0.02 1.03 16 42 H 0.41 8.27 7.15 -92.70 -0.66 7.61 16 43 H 0.05 1.54 7.98 -2.39 -0.02 1.52 16 44 H 0.18 5.71 1.14 -106.48 -0.12 5.59 16 45 H 0.06 1.92 6.77 -2.39 -0.02 1.91 16 46 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.11 3.69 4.07 -2.39 -0.01 3.68 16 49 H 0.11 3.43 4.85 -2.38 -0.01 3.42 16 50 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 51 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 52 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 53 H 0.25 13.65 8.31 -92.70 -0.77 12.88 16 Total: -1.00 -68.69 399.63 3.35 -65.34 By element: Atomic # 1 Polarization: 32.43 SS G_CDS: 0.11 Total: 32.54 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 5.78 Total: -9.23 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -3.59 Total: -103.53 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.98 Total: -32.01 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -68.69 3.35 -65.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724597575.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.439 kcal (2) G-P(sol) polarization free energy of solvation -68.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds