Wall clock time and date at job start Tue Mar 31 2020 19:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47134 * 2 1 4 4 C 1.50704 * 109.47002 * 239.99734 * 2 1 3 5 5 O 1.21279 * 119.99882 * 239.99684 * 4 2 1 6 6 N 1.34773 * 119.99807 * 60.00300 * 4 2 1 7 7 C 1.46497 * 119.99803 * 179.97438 * 6 4 2 8 8 C 1.52994 * 115.55367 * 179.91046 * 7 6 4 9 9 C 1.53041 * 109.46216 * 85.69685 * 8 7 6 10 10 C 1.53193 * 109.31589 * 178.60371 * 9 8 7 11 11 N 1.46926 * 108.76290 * 54.65677 * 10 9 8 12 12 C 1.36936 * 120.63330 * 126.36468 * 11 10 9 13 13 H 1.08000 * 120.00450 * 207.69255 * 12 11 10 14 14 C 1.38811 * 120.00048 * 27.68760 * 12 11 10 15 15 N 1.31622 * 119.99732 * 17.36513 * 14 12 11 16 16 Si 1.86799 * 120.00518 * 197.36528 * 14 12 11 17 17 H 1.48498 * 109.46656 * 0.02562 * 16 14 12 18 18 H 1.48492 * 109.47272 * 119.99924 * 16 14 12 19 19 H 1.48501 * 109.47242 * 240.00481 * 16 14 12 20 20 C 1.46929 * 118.74223 * 306.38269 * 11 10 9 21 21 C 1.53042 * 109.45772 * 325.64456 * 8 7 6 22 22 C 1.53009 * 117.50091 * 325.58286 * 7 6 4 23 23 C 1.53001 * 60.03263 * 107.47634 * 22 7 6 24 24 C 1.52999 * 109.46862 * 119.99492 * 2 1 3 25 25 H 1.09004 * 110.27070 * 180.63357 * 24 2 1 26 26 C 1.54938 * 110.31547 * 302.83539 * 24 2 1 27 27 C 1.55296 * 100.94473 * 155.36034 * 26 24 2 28 28 C 1.54379 * 102.25586 * 325.86878 * 27 26 24 29 29 O 1.43241 * 107.58773 * 21.35323 * 28 27 26 30 30 H 1.09007 * 109.46995 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47583 * 300.00080 * 1 2 3 32 32 H 1.08994 * 109.47391 * 60.00437 * 1 2 3 33 33 H 0.96997 * 120.00297 * 359.97438 * 6 4 2 34 34 H 1.09000 * 109.46839 * 205.67295 * 8 7 6 35 35 H 1.09008 * 109.49523 * 298.56822 * 9 8 7 36 36 H 1.08993 * 109.49751 * 58.66146 * 9 8 7 37 37 H 1.09000 * 109.59769 * 294.87289 * 10 9 8 38 38 H 1.08995 * 109.58459 * 174.43248 * 10 9 8 39 39 H 0.97000 * 120.00075 * 180.02562 * 15 14 12 40 40 H 1.09004 * 109.58729 * 293.82888 * 20 11 10 41 41 H 1.08994 * 109.58971 * 173.39466 * 20 11 10 42 42 H 1.09003 * 109.49773 * 301.33254 * 21 8 7 43 43 H 1.09002 * 109.49956 * 61.43104 * 21 8 7 44 44 H 1.08997 * 117.49657 * 214.98097 * 22 7 6 45 45 H 1.09001 * 117.49327 * 359.97210 * 22 7 6 46 46 H 1.08997 * 117.49700 * 107.50168 * 23 22 7 47 47 H 1.09002 * 117.49686 * 252.52561 * 23 22 7 48 48 H 1.09004 * 111.12828 * 273.28267 * 26 24 2 49 49 H 1.09003 * 111.12339 * 37.44188 * 26 24 2 50 50 H 1.09008 * 110.85108 * 207.67721 * 27 26 24 51 51 H 1.09007 * 110.85018 * 84.05764 * 27 26 24 52 52 H 1.08997 * 109.83046 * 261.84572 * 28 27 26 53 53 H 1.08997 * 109.90628 * 140.91256 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.7296 -1.6965 -1.1191 6 7 1.7067 -0.2500 -2.4545 7 6 2.1955 -0.9404 -3.6507 8 6 1.7630 -0.3326 -4.9864 9 6 2.7377 0.7798 -5.3799 10 6 2.3218 1.3623 -6.7343 11 7 0.9186 1.7905 -6.6538 12 6 0.5577 3.0663 -6.9962 13 1 -0.3119 3.5210 -6.5453 14 6 1.3096 3.7752 -7.9230 15 7 2.1433 3.1394 -8.7187 16 14 1.1384 5.6316 -8.0410 17 1 0.1437 6.1013 -7.0435 18 1 2.4517 6.2682 -7.7672 19 1 0.6840 6.0011 -9.4057 20 6 -0.0900 0.8240 -6.1984 21 6 0.3533 0.2472 -4.8501 22 6 3.5853 -1.5765 -3.5810 23 6 2.3382 -2.4628 -3.5792 24 6 2.0399 -0.7211 1.2493 25 1 3.1298 -0.7190 1.2682 26 6 1.4764 -0.0486 2.5263 27 6 1.5447 -1.2274 3.5350 28 6 1.2499 -2.4465 2.6349 29 8 1.5434 -2.0686 1.2847 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3634 0.5137 -0.8900 33 1 1.1488 0.5384 -2.5436 34 1 1.7650 -1.1056 -5.7549 35 1 2.7177 1.5652 -4.6242 36 1 3.7454 0.3711 -5.4538 37 1 2.4278 0.6015 -7.5076 38 1 2.9521 2.2190 -6.9726 39 1 2.6690 3.6347 -9.3661 40 1 -0.1805 0.0192 -6.9280 41 1 -1.0508 1.3255 -6.0832 42 1 -0.3364 -0.5406 -4.5471 43 1 0.3559 1.0376 -4.0995 44 1 4.1913 -1.5621 -4.4868 45 1 4.1362 -1.4808 -2.6452 46 1 2.1238 -3.0316 -4.4839 47 1 2.0684 -2.9500 -2.6422 48 1 2.1091 0.7794 2.8462 49 1 0.4482 0.2805 2.3758 50 1 0.7826 -1.1220 4.3072 51 1 2.5384 -1.3028 3.9769 52 1 0.1995 -2.7243 2.7210 53 1 1.8797 -3.2860 2.9292 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725793161.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:13 Heat of formation + Delta-G solvation = -56.146623 kcal Electronic energy + Delta-G solvation = -30888.489319 eV Core-core repulsion = 26953.548412 eV Total energy + Delta-G solvation = -3934.940907 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.74478 -40.44455 -39.20951 -37.39391 -35.14578 -34.54819 -33.46159 -32.76522 -32.07469 -31.40050 -28.92462 -27.39022 -26.02805 -24.47970 -24.06515 -23.23466 -22.86596 -22.35577 -21.27668 -20.71953 -20.14372 -18.75115 -18.21594 -17.84530 -17.01115 -16.78283 -16.35617 -16.09033 -15.81983 -15.52135 -15.34066 -15.23687 -14.98257 -14.79512 -14.58951 -14.50874 -14.30369 -14.18185 -13.89204 -13.20180 -13.08536 -12.96455 -12.76169 -12.71224 -12.65240 -12.57249 -12.47513 -12.24696 -12.15958 -12.01497 -11.90987 -11.90479 -11.85827 -11.69627 -11.52926 -11.50931 -11.10892 -10.89888 -10.52296 -10.38776 -10.37449 -9.49383 -8.65294 -7.84417 -5.29031 1.47550 1.49830 1.59817 1.68790 2.14827 2.53566 2.92035 2.99883 3.29835 3.54541 3.58778 3.62672 3.74172 3.80873 3.94104 4.02154 4.03826 4.08462 4.16299 4.24200 4.36517 4.40249 4.45390 4.48994 4.58464 4.64957 4.69209 4.76852 4.81701 4.82701 4.85875 4.91227 4.94700 4.96431 5.01188 5.05927 5.06483 5.12067 5.19202 5.22199 5.26791 5.27543 5.36015 5.39273 5.42039 5.54772 5.67024 5.71507 5.79967 6.21821 6.42260 6.64388 7.18027 7.35416 7.90096 8.41615 9.22012 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.018068 B = 0.002685 C = 0.002490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.317032 B =10424.093994 C =11241.116160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 H 0.129 0.871 4 C 0.512 3.488 5 O -0.557 6.557 6 N -0.687 5.687 7 C 0.116 3.884 8 C -0.032 4.032 9 C -0.115 4.115 10 C 0.177 3.823 11 N -0.609 5.609 12 C -0.256 4.256 13 H 0.070 0.930 14 C -0.054 4.054 15 N -0.937 5.937 16 Si 0.964 3.036 17 H -0.263 1.263 18 H -0.292 1.292 19 H -0.295 1.295 20 C 0.140 3.860 21 C -0.111 4.111 22 C -0.178 4.178 23 C -0.173 4.173 24 C 0.097 3.903 25 H 0.055 0.945 26 C -0.149 4.149 27 C -0.149 4.149 28 C 0.038 3.962 29 O -0.392 6.392 30 H 0.050 0.950 31 H 0.092 0.908 32 H 0.069 0.931 33 H 0.411 0.589 34 H 0.074 0.926 35 H 0.052 0.948 36 H 0.060 0.940 37 H -0.007 1.007 38 H 0.052 0.948 39 H 0.248 0.752 40 H 0.011 0.989 41 H 0.058 0.942 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.097 0.903 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.091 0.909 48 H 0.099 0.901 49 H 0.098 0.902 50 H 0.101 0.899 51 H 0.078 0.922 52 H 0.073 0.927 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.968 -7.127 24.395 25.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.129 4.129 3 H 0.147 0.853 4 C 0.299 3.701 5 O -0.435 6.435 6 N -0.339 5.339 7 C 0.028 3.972 8 C -0.051 4.051 9 C -0.154 4.154 10 C 0.051 3.949 11 N -0.332 5.332 12 C -0.387 4.387 13 H 0.087 0.913 14 C -0.249 4.249 15 N -0.583 5.583 16 Si 0.793 3.207 17 H -0.188 1.188 18 H -0.219 1.219 19 H -0.223 1.223 20 C 0.015 3.985 21 C -0.150 4.150 22 C -0.216 4.216 23 C -0.212 4.212 24 C 0.040 3.960 25 H 0.073 0.927 26 C -0.187 4.187 27 C -0.186 4.186 28 C -0.038 4.038 29 O -0.312 6.312 30 H 0.069 0.931 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.250 0.750 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.011 0.989 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.029 0.971 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.083 0.917 44 H 0.115 0.885 45 H 0.108 0.892 46 H 0.119 0.881 47 H 0.109 0.891 48 H 0.118 0.882 49 H 0.116 0.884 50 H 0.119 0.881 51 H 0.096 0.904 52 H 0.091 0.909 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.448 -7.875 24.195 25.562 hybrid contribution 0.219 1.103 -0.686 1.317 sum -2.230 -6.772 23.509 24.566 Atomic orbital electron populations 1.21782 0.91113 1.02678 1.04033 1.21590 0.99405 1.00910 0.91002 0.85334 1.21063 0.79616 0.84428 0.84951 1.90662 1.38715 1.27084 1.87018 1.45421 1.52995 1.31637 1.03833 1.20670 0.98551 0.91811 0.86194 1.20606 0.95619 0.96839 0.92062 1.21989 0.97990 0.97244 0.98179 1.20580 0.85614 0.96488 0.92192 1.44333 1.02639 1.09231 1.77036 1.19564 1.11886 0.90233 1.16971 0.91265 1.25785 1.00831 1.02419 0.95870 1.70200 1.30487 1.35264 1.22393 0.85248 0.77310 0.80984 0.77173 1.18761 1.21930 1.22266 1.21059 0.92282 0.91532 0.93617 1.21866 0.95416 0.99759 0.97998 1.23260 0.91400 1.04149 1.02818 1.23366 1.01999 0.92811 1.03005 1.22726 0.97134 0.82020 0.94158 0.92662 1.23454 1.03680 0.98716 0.92801 1.23099 1.03717 0.93293 0.98500 1.23272 1.00770 0.97936 0.81827 1.88548 1.85261 1.30285 1.27058 0.93128 0.88985 0.91245 0.75039 0.90738 0.92960 0.92105 0.98852 0.92931 0.94276 0.97071 0.92383 0.90375 0.91727 0.88491 0.89157 0.88130 0.89106 0.88200 0.88400 0.88064 0.90353 0.90905 0.92149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 8.63 71.98 0.62 -1.43 16 2 C -0.11 -1.95 2.70 -11.54 -0.03 -1.98 16 3 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 4 C 0.51 13.31 6.73 87.66 0.59 13.90 16 5 O -0.56 -18.46 10.87 13.03 0.14 -18.32 16 6 N -0.69 -17.25 5.28 -422.80 -2.23 -19.48 16 7 C 0.12 3.29 2.49 3.63 0.01 3.29 16 8 C -0.03 -1.00 2.28 -10.77 -0.02 -1.02 16 9 C -0.11 -4.20 5.22 30.67 0.16 -4.04 16 10 C 0.18 8.41 5.31 86.36 0.46 8.87 16 11 N -0.61 -29.58 2.99 -699.08 -2.09 -31.68 16 12 C -0.26 -13.72 9.58 84.03 0.81 -12.91 16 13 H 0.07 3.58 7.89 -2.91 -0.02 3.56 16 14 C -0.05 -2.98 4.91 84.86 0.42 -2.57 16 15 N -0.94 -55.32 11.19 21.65 0.24 -55.07 16 16 Si 0.96 44.24 29.59 68.60 2.03 46.27 16 17 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 18 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 19 H -0.30 -13.68 7.11 99.48 0.71 -12.97 16 20 C 0.14 5.50 6.52 86.36 0.56 6.06 16 21 C -0.11 -3.37 4.83 30.68 0.15 -3.22 16 22 C -0.18 -5.30 8.90 30.60 0.27 -5.03 16 23 C -0.17 -5.04 9.37 30.62 0.29 -4.75 16 24 C 0.10 1.84 2.69 31.26 0.08 1.93 16 25 H 0.06 1.22 8.13 -2.38 -0.02 1.20 16 26 C -0.15 -1.63 6.45 32.05 0.21 -1.43 16 27 C -0.15 -1.57 7.02 31.85 0.22 -1.35 16 28 C 0.04 0.63 7.79 72.45 0.56 1.19 16 29 O -0.39 -9.45 9.41 -132.93 -1.25 -10.70 16 30 H 0.05 0.95 7.69 -2.38 -0.02 0.93 16 31 H 0.09 0.91 6.05 -2.39 -0.01 0.89 16 32 H 0.07 0.94 7.56 -2.39 -0.02 0.92 16 33 H 0.41 9.02 6.08 -92.71 -0.56 8.45 16 34 H 0.07 2.40 7.90 -2.39 -0.02 2.38 16 35 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 36 H 0.06 2.09 7.24 -2.39 -0.02 2.07 16 37 H -0.01 -0.34 8.14 -2.39 -0.02 -0.36 16 38 H 0.05 2.86 6.04 -2.39 -0.01 2.85 16 39 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 40 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 41 H 0.06 2.20 7.93 -2.39 -0.02 2.18 16 42 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 43 H 0.06 1.85 6.50 -2.39 -0.02 1.84 16 44 H 0.10 2.75 7.60 -2.39 -0.02 2.73 16 45 H 0.09 2.97 6.39 -2.39 -0.02 2.96 16 46 H 0.10 2.66 8.05 -2.39 -0.02 2.64 16 47 H 0.09 2.98 6.36 -2.39 -0.02 2.96 16 48 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 49 H 0.10 0.85 5.75 -2.39 -0.01 0.84 16 50 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 51 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 52 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 53 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -69.57 394.93 2.53 -67.04 By element: Atomic # 1 Polarization: 26.08 SS G_CDS: 0.33 Total: 26.41 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 5.35 Total: -4.48 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -4.08 Total: -106.23 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -1.11 Total: -29.02 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -69.57 2.53 -67.04 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725793161.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.896 kcal (2) G-P(sol) polarization free energy of solvation -69.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds