Wall clock time and date at job start Tue Mar 31 2020 19:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46657 * 2 1 4 4 C 1.50700 * 109.47156 * 119.99941 * 2 1 3 5 5 O 1.21289 * 119.99516 * 119.99995 * 4 2 1 6 6 N 1.34771 * 120.00013 * 300.00188 * 4 2 1 7 7 C 1.46506 * 119.99852 * 179.97438 * 6 4 2 8 8 C 1.52998 * 115.54985 * 180.02562 * 7 6 4 9 9 C 1.53033 * 109.46181 * 39.32841 * 8 7 6 10 10 C 1.53193 * 109.31535 * 181.38585 * 9 8 7 11 11 N 1.46926 * 108.77549 * 305.36895 * 10 9 8 12 12 C 1.36936 * 120.62788 * 233.58292 * 11 10 9 13 13 H 1.08000 * 119.99975 * 152.39895 * 12 11 10 14 14 C 1.38812 * 119.99989 * 332.39768 * 12 11 10 15 15 N 1.31615 * 120.00080 * 334.91068 * 14 12 11 16 16 Si 1.86807 * 119.99857 * 154.91365 * 14 12 11 17 17 H 1.48500 * 109.46919 * 89.99892 * 16 14 12 18 18 H 1.48494 * 109.46852 * 209.99703 * 16 14 12 19 19 H 1.48504 * 109.47036 * 329.99911 * 16 14 12 20 20 C 1.46924 * 118.73929 * 53.85389 * 11 10 9 21 21 C 1.53044 * 109.46100 * 159.40038 * 8 7 6 22 22 C 1.53004 * 117.51488 * 325.69961 * 7 6 4 23 23 C 1.52999 * 117.49606 * 34.33059 * 7 6 4 24 24 C 1.53001 * 109.47054 * 240.00494 * 2 1 3 25 25 H 1.09003 * 109.86473 * 298.98827 * 24 2 1 26 26 C 1.54097 * 109.87887 * 59.99515 * 24 2 1 27 27 C 1.54820 * 104.18556 * 121.45720 * 26 24 2 28 28 C 1.54996 * 102.09123 * 20.87862 * 27 26 24 29 29 O 1.43742 * 109.87629 * 177.83141 * 24 2 1 30 30 H 1.09002 * 109.47411 * 59.99837 * 1 2 3 31 31 H 1.08997 * 109.47388 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47218 * 299.99708 * 1 2 3 33 33 H 0.97002 * 120.00368 * 0.02562 * 6 4 2 34 34 H 1.08999 * 109.45729 * 279.35181 * 8 7 6 35 35 H 1.08998 * 109.50106 * 61.43728 * 9 8 7 36 36 H 1.09001 * 109.50074 * 301.33970 * 9 8 7 37 37 H 1.08993 * 109.59122 * 185.57577 * 10 9 8 38 38 H 1.09005 * 109.58191 * 65.14961 * 10 9 8 39 39 H 0.97001 * 120.00150 * 354.26074 * 15 14 12 40 40 H 1.09003 * 109.58513 * 65.93017 * 20 11 10 41 41 H 1.08999 * 109.58755 * 186.35357 * 20 11 10 42 42 H 1.09007 * 109.49309 * 298.56441 * 21 8 7 43 43 H 1.09000 * 109.50024 * 58.65507 * 21 8 7 44 44 H 1.08997 * 117.49668 * 214.96708 * 22 7 6 45 45 H 1.08993 * 117.49904 * 359.97438 * 22 7 6 46 46 H 1.08995 * 117.50232 * 359.97155 * 23 7 6 47 47 H 1.09001 * 117.49836 * 144.97889 * 23 7 6 48 48 H 1.09003 * 110.48817 * 240.12808 * 26 24 2 49 49 H 1.08998 * 110.49215 * 2.65145 * 26 24 2 50 50 H 1.08993 * 110.90917 * 139.07804 * 27 26 24 51 51 H 1.08998 * 110.90639 * 262.64597 * 27 26 24 52 52 H 1.09001 * 110.62048 * 81.47939 * 28 27 26 53 53 H 1.08995 * 110.61752 * 204.31904 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7296 -1.6965 1.1191 6 7 1.7067 -0.2500 2.4545 7 6 2.1946 -0.9409 3.6507 8 6 1.7634 -0.3321 4.9865 9 6 0.3107 0.1386 4.8870 10 6 -0.1066 0.7787 6.2147 11 7 0.1446 -0.1785 7.3007 12 6 -0.8529 -0.5193 8.1748 13 1 -0.8409 -1.4852 8.6578 14 6 -1.8795 0.3766 8.4400 15 7 -1.6823 1.6684 8.2839 16 14 -3.5410 -0.2514 9.0186 17 1 -3.5542 -0.3223 10.5018 18 1 -4.6075 0.6733 8.5576 19 1 -3.7819 -1.6046 8.4562 20 6 1.4879 -0.7583 7.4348 21 6 1.8858 -1.3854 6.0901 22 6 2.3338 -2.4630 3.5805 23 6 3.5832 -1.5797 3.5805 24 6 2.0400 -0.7211 -1.2493 25 1 1.6950 -1.7552 -1.2469 26 6 1.5314 -0.0020 -2.5137 27 6 2.8227 0.3896 -3.2728 28 6 3.8622 -0.5908 -2.6723 29 8 3.4764 -0.6821 -1.2840 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.1487 0.5385 2.5436 34 1 2.4049 0.5169 5.2225 35 1 -0.3344 -0.7142 4.6757 36 1 0.2198 0.8715 4.0853 37 1 -1.1677 1.0260 6.1836 38 1 0.4769 1.6839 6.3832 39 1 -0.7979 2.0010 8.0645 40 1 2.1987 0.0241 7.7008 41 1 1.4791 -1.5255 8.2090 42 1 1.2258 -2.2239 5.8674 43 1 2.9160 -1.7373 6.1446 44 1 2.1185 -3.0304 4.4859 45 1 2.0619 -2.9506 2.6443 46 1 4.1334 -1.4863 2.6443 47 1 4.1899 -1.5657 4.4859 48 1 0.9235 -0.6759 -3.1175 49 1 0.9608 0.8866 -2.2439 50 1 2.7084 0.2270 -4.3445 51 1 3.0974 1.4238 -3.0653 52 1 3.7936 -1.5659 -3.1547 53 1 4.8702 -0.1871 -2.7674 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725793163.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:24 Heat of formation + Delta-G solvation = -58.908811 kcal Electronic energy + Delta-G solvation = -30798.848967 eV Core-core repulsion = 26863.788282 eV Total energy + Delta-G solvation = -3935.060685 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.84100 -40.52645 -39.40051 -37.58622 -35.33774 -34.68939 -33.70900 -32.71234 -32.18768 -31.08589 -28.84616 -27.32398 -25.90422 -24.65077 -23.92689 -23.49340 -23.28437 -22.20655 -21.32405 -20.79819 -20.13956 -19.36034 -18.69738 -17.38533 -17.00962 -16.68548 -16.48489 -16.23951 -16.00093 -15.53069 -15.52075 -15.36316 -15.19560 -14.91243 -14.58909 -14.49797 -14.25068 -14.20504 -13.92576 -13.34243 -13.29776 -13.03637 -12.87117 -12.64135 -12.52753 -12.45628 -12.39620 -12.33218 -12.27637 -12.09499 -11.95423 -11.89650 -11.80624 -11.57063 -11.51201 -11.46532 -11.23799 -10.96653 -10.61611 -10.46218 -10.44154 -9.56674 -8.91108 -8.23036 -5.37433 1.58958 1.62776 1.66364 1.84134 2.06354 2.66352 2.89929 2.95760 3.22499 3.49125 3.53342 3.58814 3.65224 3.74133 3.86989 3.93560 3.97395 4.08581 4.12586 4.16541 4.23411 4.33546 4.38992 4.41459 4.44618 4.55030 4.58521 4.68476 4.72749 4.76557 4.78385 4.80371 4.85634 4.89276 4.93204 4.98087 5.00071 5.07853 5.11324 5.13507 5.15596 5.21541 5.24151 5.25268 5.26303 5.33282 5.54942 5.61091 5.86016 6.04350 6.41808 6.57439 7.08685 7.29035 7.80452 8.24520 9.01782 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.019686 B = 0.002593 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.969086 B =10795.845644 C =11670.173812 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.104 4.104 3 H 0.115 0.885 4 C 0.511 3.489 5 O -0.556 6.556 6 N -0.690 5.690 7 C 0.110 3.890 8 C -0.031 4.031 9 C -0.111 4.111 10 C 0.156 3.844 11 N -0.618 5.618 12 C -0.354 4.354 13 H 0.047 0.953 14 C -0.075 4.075 15 N -0.942 5.942 16 Si 1.113 2.887 17 H -0.284 1.284 18 H -0.288 1.288 19 H -0.279 1.279 20 C 0.142 3.858 21 C -0.112 4.112 22 C -0.180 4.180 23 C -0.171 4.171 24 C 0.094 3.906 25 H 0.052 0.948 26 C -0.148 4.148 27 C -0.149 4.149 28 C 0.032 3.968 29 O -0.392 6.392 30 H 0.097 0.903 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.412 0.588 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.046 0.954 38 H 0.007 0.993 39 H 0.255 0.745 40 H 0.017 0.983 41 H 0.049 0.951 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.104 0.896 48 H 0.089 0.911 49 H 0.098 0.902 50 H 0.098 0.902 51 H 0.080 0.920 52 H 0.059 0.941 53 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.378 -1.486 -24.075 25.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.126 4.126 3 H 0.133 0.867 4 C 0.299 3.701 5 O -0.434 6.434 6 N -0.341 5.341 7 C 0.023 3.977 8 C -0.050 4.050 9 C -0.150 4.150 10 C 0.031 3.969 11 N -0.343 5.343 12 C -0.484 4.484 13 H 0.065 0.935 14 C -0.271 4.271 15 N -0.584 5.584 16 Si 0.938 3.062 17 H -0.211 1.211 18 H -0.214 1.214 19 H -0.204 1.204 20 C 0.017 3.983 21 C -0.152 4.152 22 C -0.218 4.218 23 C -0.209 4.209 24 C 0.036 3.964 25 H 0.070 0.930 26 C -0.185 4.185 27 C -0.186 4.186 28 C -0.044 4.044 29 O -0.312 6.312 30 H 0.116 0.884 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.250 0.750 34 H 0.093 0.907 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.025 0.975 39 H 0.065 0.935 40 H 0.035 0.965 41 H 0.068 0.932 42 H 0.076 0.924 43 H 0.099 0.901 44 H 0.120 0.880 45 H 0.105 0.895 46 H 0.108 0.892 47 H 0.122 0.878 48 H 0.108 0.892 49 H 0.117 0.883 50 H 0.117 0.883 51 H 0.099 0.901 52 H 0.078 0.922 53 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 6.453 -1.748 -23.585 24.514 hybrid contribution 1.429 -0.184 -0.021 1.441 sum 7.882 -1.932 -23.606 24.962 Atomic orbital electron populations 1.21846 0.90179 1.03195 1.04821 1.21579 0.98813 1.01234 0.90931 0.86684 1.21097 0.79544 0.84499 0.84955 1.90665 1.38290 1.27443 1.87005 1.45399 1.53080 1.31745 1.03898 1.20689 0.98796 0.92279 0.85984 1.20486 0.96316 0.97910 0.90333 1.21871 0.95594 1.00152 0.97400 1.20824 0.98606 0.90495 0.87021 1.44379 1.07326 1.51915 1.30646 1.20208 1.05475 0.99144 1.23525 0.93528 1.27105 1.07050 0.93638 0.99332 1.70871 1.25103 1.13445 1.48963 0.82893 0.72406 0.74809 0.76117 1.21121 1.21369 1.20420 1.21135 0.85745 0.95568 0.95862 1.22058 1.01193 0.97518 0.94381 1.23406 1.02279 0.93160 1.02950 1.23309 0.91010 1.03536 1.03067 1.22527 0.81347 0.98193 0.94318 0.92968 1.23088 0.98710 1.01974 0.94764 1.23130 0.94004 1.00141 1.01338 1.23749 1.00007 0.99090 0.81541 1.89003 1.20987 1.95100 1.26112 0.88403 0.92660 0.90831 0.75036 0.90744 0.93104 0.90572 0.93524 0.97534 0.93520 0.96477 0.93203 0.92372 0.90147 0.87993 0.89478 0.89172 0.87785 0.89213 0.88309 0.88327 0.90089 0.92230 0.88561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.83 71.98 0.64 -1.28 16 2 C -0.10 -1.90 2.39 -11.54 -0.03 -1.93 16 3 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 4 C 0.51 13.39 6.73 87.66 0.59 13.98 16 5 O -0.56 -18.60 10.86 12.72 0.14 -18.46 16 6 N -0.69 -17.23 5.28 -422.91 -2.23 -19.46 16 7 C 0.11 3.14 2.98 3.60 0.01 3.15 16 8 C -0.03 -0.96 2.45 -10.77 -0.03 -0.99 16 9 C -0.11 -3.81 5.02 30.67 0.15 -3.66 16 10 C 0.16 7.09 4.69 86.36 0.41 7.50 16 11 N -0.62 -30.65 2.85 -698.27 -1.99 -32.64 16 12 C -0.35 -19.80 9.49 84.03 0.80 -19.00 16 13 H 0.05 2.64 7.94 -2.91 -0.02 2.61 16 14 C -0.07 -4.24 4.68 84.86 0.40 -3.84 16 15 N -0.94 -56.72 12.40 21.65 0.27 -56.45 16 16 Si 1.11 50.83 29.99 68.60 2.06 52.88 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 18 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 19 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 20 C 0.14 5.86 6.54 86.51 0.57 6.43 16 21 C -0.11 -3.70 4.02 30.82 0.12 -3.58 16 22 C -0.18 -5.40 8.84 30.60 0.27 -5.13 16 23 C -0.17 -4.93 9.06 30.60 0.28 -4.65 16 24 C 0.09 1.81 2.49 30.97 0.08 1.89 16 25 H 0.05 1.19 8.08 -2.39 -0.02 1.17 16 26 C -0.15 -1.64 6.03 31.59 0.19 -1.45 16 27 C -0.15 -1.54 7.15 31.90 0.23 -1.32 16 28 C 0.03 0.52 7.72 72.67 0.56 1.08 16 29 O -0.39 -9.62 10.26 -133.20 -1.37 -10.99 16 30 H 0.10 0.80 6.53 -2.39 -0.02 0.79 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.94 7.56 -2.39 -0.02 0.92 16 33 H 0.41 8.57 6.22 -92.71 -0.58 7.99 16 34 H 0.07 2.29 8.14 -2.39 -0.02 2.28 16 35 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.08 2.12 6.41 -2.39 -0.02 2.11 16 37 H 0.05 2.42 6.29 -2.39 -0.02 2.40 16 38 H 0.01 0.31 7.87 -2.38 -0.02 0.29 16 39 H 0.25 15.60 6.72 -92.71 -0.62 14.98 16 40 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.05 2.08 7.93 -2.39 -0.02 2.06 16 42 H 0.06 2.03 6.84 -2.38 -0.02 2.02 16 43 H 0.08 2.26 6.88 -2.39 -0.02 2.24 16 44 H 0.10 2.96 5.91 -2.39 -0.01 2.95 16 45 H 0.09 2.92 6.38 -2.39 -0.02 2.90 16 46 H 0.09 2.95 6.37 -2.39 -0.02 2.93 16 47 H 0.10 2.69 7.28 -2.39 -0.02 2.67 16 48 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.10 0.78 6.48 -2.39 -0.02 0.76 16 50 H 0.10 0.64 8.14 -2.39 -0.02 0.63 16 51 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 52 H 0.06 0.89 8.14 -2.39 -0.02 0.88 16 53 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 Total: -1.00 -72.33 391.19 2.58 -69.75 By element: Atomic # 1 Polarization: 27.69 SS G_CDS: 0.47 Total: 28.17 kcal Atomic # 6 Polarization: -18.03 SS G_CDS: 5.23 Total: -12.80 kcal Atomic # 7 Polarization: -104.60 SS G_CDS: -3.95 Total: -108.55 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -1.23 Total: -29.45 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 2.06 Total: 52.88 kcal Total: -72.33 2.58 -69.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725793163.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.841 kcal (2) G-P(sol) polarization free energy of solvation -72.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds