Wall clock time and date at job start Tue Mar 31 2020 20:33:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09003 * 109.46814 * 2 1 4 4 O 1.42902 * 109.46917 * 240.00198 * 2 1 3 5 5 C 1.42901 * 113.99948 * 90.00271 * 4 2 1 6 6 C 1.52998 * 109.47145 * 180.02562 * 5 4 2 7 7 C 1.52994 * 117.49869 * 174.99789 * 6 5 4 8 8 C 1.52996 * 117.49721 * 243.62302 * 6 5 4 9 9 C 1.50699 * 109.46970 * 120.00160 * 2 1 3 10 10 O 1.21280 * 119.99720 * 108.98678 * 9 2 1 11 11 N 1.34776 * 120.00305 * 288.98519 * 9 2 1 12 12 C 1.47476 * 125.66317 * 184.46914 * 11 9 2 13 13 C 1.55239 * 104.79053 * 155.92813 * 12 11 9 14 14 C 1.54510 * 101.44204 * 36.66521 * 13 12 11 15 15 C 1.47171 * 125.65669 * 4.77500 * 11 9 2 16 16 C 1.52278 * 110.20313 * 83.41972 * 14 13 12 17 17 C 1.53315 * 109.41604 * 182.20240 * 16 14 13 18 18 N 1.46925 * 108.70940 * 306.49197 * 17 16 14 19 19 C 1.36943 * 120.56415 * 234.21526 * 18 17 16 20 20 H 1.07998 * 119.99795 * 150.64329 * 19 18 17 21 21 C 1.38809 * 119.99808 * 330.63945 * 19 18 17 22 22 N 1.31614 * 120.00271 * 341.45883 * 21 19 18 23 23 Si 1.86801 * 119.99695 * 161.46333 * 21 19 18 24 24 H 1.48500 * 109.47465 * 94.97370 * 23 21 19 25 25 H 1.48506 * 109.47063 * 214.97636 * 23 21 19 26 26 H 1.48506 * 109.47036 * 334.97153 * 23 21 19 27 27 C 1.46936 * 118.87320 * 54.23457 * 18 17 16 28 28 C 1.52268 * 110.21303 * 206.60978 * 14 13 12 29 29 H 1.08997 * 109.46774 * 306.13563 * 1 2 3 30 30 H 1.08996 * 109.47119 * 66.13524 * 1 2 3 31 31 H 1.08995 * 109.46980 * 186.13460 * 1 2 3 32 32 H 1.08990 * 109.47484 * 59.99401 * 5 4 2 33 33 H 1.09004 * 109.46906 * 299.99674 * 5 4 2 34 34 H 1.09000 * 115.56281 * 29.30871 * 6 5 4 35 35 H 1.09000 * 117.50516 * 359.97438 * 7 6 5 36 36 H 1.09006 * 117.49708 * 214.97525 * 7 6 5 37 37 H 1.08997 * 117.50141 * 145.02000 * 8 6 5 38 38 H 1.08995 * 117.50389 * 359.97438 * 8 6 5 39 39 H 1.08996 * 110.35343 * 274.87637 * 12 11 9 40 40 H 1.09001 * 110.35232 * 37.16545 * 12 11 9 41 41 H 1.08997 * 111.20401 * 278.56907 * 13 12 11 42 42 H 1.09006 * 110.91104 * 154.63401 * 13 12 11 43 43 H 1.08996 * 109.91343 * 300.83830 * 15 11 9 44 44 H 1.09001 * 109.91300 * 61.91796 * 15 11 9 45 45 H 1.08997 * 109.47908 * 302.18226 * 16 14 13 46 46 H 1.08997 * 109.47736 * 62.21987 * 16 14 13 47 47 H 1.09006 * 109.59277 * 186.72849 * 17 16 14 48 48 H 1.09001 * 109.60061 * 66.26130 * 17 16 14 49 49 H 0.97005 * 120.00168 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.59952 * 185.99004 * 27 18 17 51 51 H 1.09004 * 109.72534 * 65.60251 * 27 18 17 52 52 H 1.09003 * 109.48146 * 297.77696 * 28 14 13 53 53 H 1.09003 * 109.47882 * 57.79398 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.2002 0.1830 -2.2941 6 6 2.7079 -0.6407 -3.4792 7 6 2.8666 0.0763 -4.8215 8 6 4.1048 -0.3207 -4.0151 9 6 2.0324 -0.7104 1.2304 10 8 2.5567 -1.7995 1.1303 11 7 1.8990 -0.1357 2.4422 12 6 2.4252 -0.6724 3.7110 13 6 2.5719 0.5665 4.6349 14 6 1.3381 1.4018 4.2257 15 6 1.1987 1.1287 2.7196 16 6 0.1038 0.9186 4.9752 17 6 -1.1185 1.7219 4.5157 18 7 -0.8224 3.1539 4.6590 19 6 -1.6561 3.9689 5.3773 20 1 -1.2596 4.8386 5.8801 21 6 -3.0108 3.6773 5.4589 22 7 -3.5630 2.8646 4.5832 23 14 -4.0501 4.4385 6.8116 24 1 -4.7069 5.6677 6.2990 25 1 -5.0866 3.4674 7.2453 26 1 -3.1829 4.7854 7.9662 27 6 0.3833 3.6967 4.0181 28 6 1.5958 2.8806 4.4811 29 1 -0.3633 0.6060 0.8300 30 1 -0.3633 0.4158 -0.9398 31 1 -0.3633 -1.0217 0.1098 32 1 2.9319 0.9514 -2.0450 33 1 1.2538 0.6548 -2.5588 34 1 2.3874 -1.6823 -3.4998 35 1 2.6089 1.1347 -4.8604 36 1 2.6505 -0.4937 -5.7251 37 1 4.7033 -1.1517 -4.3882 38 1 4.6619 0.4768 -3.5236 39 1 1.7233 -1.3874 4.1403 40 1 3.3956 -1.1421 3.5505 41 1 3.4957 1.1062 4.4269 42 1 2.5177 0.2777 5.6846 43 1 1.6560 1.9387 2.1516 44 1 0.1460 1.0363 2.4522 45 1 -0.0571 -0.1391 4.7668 46 1 0.2502 1.0602 6.0460 47 1 -1.9791 1.4630 5.1326 48 1 -1.3332 1.4957 3.4712 49 1 -4.5096 2.6606 4.6405 50 1 0.5127 4.7398 4.3067 51 1 0.2873 3.6264 2.9345 52 1 1.7576 3.0427 5.5468 53 1 2.4798 3.1965 3.9271 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733286447.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:33 Heat of formation + Delta-G solvation = -49.909965 kcal Electronic energy + Delta-G solvation = -30720.985692 eV Core-core repulsion = 26786.315226 eV Total energy + Delta-G solvation = -3934.670466 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.74803 -40.22926 -39.09809 -37.56522 -37.22679 -34.74350 -33.34037 -32.21058 -31.60909 -30.43629 -28.17243 -27.98998 -26.55137 -25.25796 -23.92169 -23.52679 -23.26067 -22.09695 -21.76180 -20.55649 -19.75851 -18.62071 -18.32416 -17.66074 -17.19464 -16.94523 -16.78142 -16.41047 -15.87087 -15.63586 -15.41829 -15.31067 -14.99788 -14.77414 -14.64803 -14.51634 -14.10894 -13.92604 -13.76811 -13.65352 -13.30177 -13.23848 -12.97382 -12.96458 -12.73077 -12.61349 -12.55153 -12.39222 -12.31867 -12.15350 -12.05145 -11.91258 -11.77738 -11.46023 -11.40278 -11.30665 -11.05617 -11.02094 -10.83386 -10.48132 -10.42692 -9.70909 -8.58704 -7.84063 -5.27769 1.44774 1.46836 1.50196 1.58538 1.63767 2.53996 2.60643 2.94647 3.29635 3.32964 3.54029 3.72100 3.76023 3.81103 3.83812 3.86824 3.93974 4.00611 4.10895 4.24801 4.27178 4.30087 4.38434 4.42948 4.51782 4.59617 4.63201 4.66103 4.68044 4.74295 4.75419 4.76819 4.80598 4.88165 4.97503 4.99971 5.08543 5.10341 5.11999 5.18158 5.22977 5.23980 5.30067 5.35385 5.40877 5.46567 5.56919 5.70981 5.81711 6.05887 6.40941 6.44269 7.03114 7.20479 7.93217 8.43744 9.21395 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015295 B = 0.002733 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1830.277867 B =10244.088467 C =11157.815429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.081 3.919 3 H 0.107 0.893 4 O -0.382 6.382 5 C 0.086 3.914 6 C -0.174 4.174 7 C -0.157 4.157 8 C -0.180 4.180 9 C 0.526 3.474 10 O -0.573 6.573 11 N -0.610 5.610 12 C 0.104 3.896 13 C -0.111 4.111 14 C -0.052 4.052 15 C 0.106 3.894 16 C -0.115 4.115 17 C 0.180 3.820 18 N -0.607 5.607 19 C -0.258 4.258 20 H 0.064 0.936 21 C -0.047 4.047 22 N -0.931 5.931 23 Si 0.956 3.044 24 H -0.288 1.288 25 H -0.296 1.296 26 H -0.270 1.270 27 C 0.138 3.862 28 C -0.106 4.106 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.063 0.937 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.056 0.944 46 H 0.058 0.942 47 H 0.043 0.957 48 H 0.003 0.997 49 H 0.248 0.752 50 H 0.052 0.948 51 H 0.021 0.979 52 H 0.063 0.937 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.766 -2.767 -10.979 18.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.020 3.980 3 H 0.124 0.876 4 O -0.301 6.301 5 C 0.010 3.990 6 C -0.193 4.193 7 C -0.193 4.193 8 C -0.217 4.217 9 C 0.315 3.685 10 O -0.452 6.452 11 N -0.344 5.344 12 C -0.018 4.018 13 C -0.148 4.148 14 C -0.053 4.053 15 C -0.015 4.015 16 C -0.154 4.154 17 C 0.054 3.946 18 N -0.330 5.330 19 C -0.388 4.388 20 H 0.082 0.918 21 C -0.243 4.243 22 N -0.577 5.577 23 Si 0.785 3.215 24 H -0.215 1.215 25 H -0.223 1.223 26 H -0.195 1.195 27 C 0.013 3.987 28 C -0.145 4.145 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.073 0.927 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.127 0.873 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.103 0.897 44 H 0.085 0.915 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.061 0.939 48 H 0.021 0.979 49 H 0.057 0.943 50 H 0.070 0.930 51 H 0.039 0.961 52 H 0.082 0.918 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 14.935 -3.603 -11.134 18.974 hybrid contribution -1.348 0.303 0.703 1.551 sum 13.587 -3.300 -10.431 17.444 Atomic orbital electron populations 1.22247 0.92681 1.03099 1.04604 1.21827 0.95604 0.96451 0.84081 0.87557 1.87995 1.86668 1.35735 1.19717 1.22321 1.00385 0.91918 0.84400 1.22106 1.01944 1.00706 0.94503 1.23080 1.00959 1.01714 0.93584 1.23164 0.90683 1.03903 1.03942 1.20489 0.78545 0.85336 0.84178 1.90665 1.46023 1.22013 1.86478 1.48579 1.54899 1.24484 1.06461 1.22402 0.99147 0.97236 0.82973 1.22879 0.97817 0.94250 0.99891 1.20867 0.95271 0.96490 0.92675 1.22386 0.96968 0.84964 0.97222 1.21900 0.95406 0.98425 0.99661 1.20555 0.94569 0.82885 0.96545 1.44256 1.24933 1.04083 1.59753 1.19441 0.88469 1.07983 1.22914 0.91819 1.25698 0.97717 1.00829 1.00054 1.70172 1.10900 1.41111 1.35490 0.85431 0.78530 0.77356 0.80149 1.21478 1.22275 1.19524 1.21131 0.86464 0.96377 0.94726 1.21803 0.98106 0.92627 1.01950 0.90473 0.89210 0.92736 0.91993 0.91299 0.88224 0.87399 0.87339 0.88228 0.88203 0.91822 0.90624 0.88852 0.88488 0.89691 0.91499 0.92490 0.92326 0.93882 0.97891 0.94326 0.92966 0.96109 0.91780 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 9.37 71.99 0.67 -3.44 16 2 C 0.08 2.08 2.54 29.85 0.08 2.16 16 3 H 0.11 2.17 7.55 -2.39 -0.02 2.15 16 4 O -0.38 -10.63 9.54 -130.18 -1.24 -11.88 16 5 C 0.09 1.69 6.03 71.98 0.43 2.13 16 6 C -0.17 -3.22 6.06 -10.80 -0.07 -3.28 16 7 C -0.16 -2.02 10.25 30.59 0.31 -1.70 16 8 C -0.18 -2.71 10.18 30.59 0.31 -2.40 16 9 C 0.53 16.48 7.18 87.66 0.63 17.10 16 10 O -0.57 -22.55 16.83 15.77 0.27 -22.28 16 11 N -0.61 -16.75 3.33 -811.85 -2.70 -19.46 16 12 C 0.10 2.57 6.58 86.96 0.57 3.15 16 13 C -0.11 -2.30 6.00 31.88 0.19 -2.11 16 14 C -0.05 -1.38 0.53 -51.91 -0.03 -1.41 16 15 C 0.11 2.79 4.19 86.49 0.36 3.16 16 16 C -0.11 -3.82 4.78 30.46 0.15 -3.68 16 17 C 0.18 7.95 5.03 86.40 0.43 8.38 16 18 N -0.61 -27.78 2.97 -698.59 -2.08 -29.86 16 19 C -0.26 -13.41 9.55 84.03 0.80 -12.60 16 20 H 0.06 3.25 7.90 -2.91 -0.02 3.23 16 21 C -0.05 -2.54 4.86 84.86 0.41 -2.13 16 22 N -0.93 -53.23 11.38 21.65 0.25 -52.99 16 23 Si 0.96 43.62 29.59 68.60 2.03 45.65 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.31 16 25 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 26 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 27 C 0.14 4.93 6.24 86.40 0.54 5.47 16 28 C -0.11 -2.83 4.70 30.46 0.14 -2.69 16 29 H 0.08 1.96 5.55 -2.39 -0.01 1.95 16 30 H 0.09 1.82 7.77 -2.39 -0.02 1.80 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.06 7.82 -2.39 -0.02 1.04 16 33 H 0.07 1.16 7.77 -2.38 -0.02 1.14 16 34 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.11 1.16 8.14 -2.38 -0.02 1.15 16 37 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.10 1.39 8.03 -2.39 -0.02 1.37 16 39 H 0.06 1.63 7.74 -2.39 -0.02 1.62 16 40 H 0.08 1.86 8.08 -2.39 -0.02 1.84 16 41 H 0.09 1.65 8.01 -2.39 -0.02 1.63 16 42 H 0.10 1.83 8.01 -2.38 -0.02 1.81 16 43 H 0.08 1.93 7.42 -2.39 -0.02 1.92 16 44 H 0.07 2.04 4.02 -2.39 -0.01 2.03 16 45 H 0.06 1.81 7.47 -2.39 -0.02 1.79 16 46 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 47 H 0.04 2.24 6.17 -2.38 -0.01 2.22 16 48 H 0.00 0.15 6.53 -2.39 -0.02 0.13 16 49 H 0.25 13.86 8.31 -92.70 -0.77 13.09 16 50 H 0.05 1.86 7.93 -2.39 -0.02 1.85 16 51 H 0.02 0.73 7.48 -2.38 -0.02 0.71 16 52 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 53 H 0.09 1.80 8.10 -2.39 -0.02 1.78 16 Total: -1.00 -68.45 403.69 3.34 -65.11 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: 0.88 Total: 19.62 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: 5.95 Total: 6.09 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -4.54 Total: -102.30 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.98 Total: -34.16 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.65 kcal Total: -68.45 3.34 -65.11 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733286447.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.195 kcal (2) G-P(sol) polarization free energy of solvation -68.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds