Wall clock time and date at job start Tue Mar 31 2020 20:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 109.47064 * 2 1 4 4 O 1.42893 * 109.47162 * 120.00389 * 2 1 3 5 5 C 1.42902 * 114.00012 * 269.99710 * 4 2 1 6 6 C 1.53000 * 109.47333 * 180.02562 * 5 4 2 7 7 C 1.52991 * 117.52054 * 116.28204 * 6 5 4 8 8 C 1.52995 * 117.49695 * 184.91532 * 6 5 4 9 9 C 1.50702 * 109.46647 * 240.00732 * 2 1 3 10 10 O 1.21280 * 119.99152 * 244.99822 * 9 2 1 11 11 N 1.34777 * 120.00516 * 64.99566 * 9 2 1 12 12 C 1.47479 * 125.65821 * 359.69534 * 11 9 2 13 13 C 1.55244 * 104.78893 * 155.92993 * 12 11 9 14 14 C 1.54509 * 101.44040 * 36.66307 * 13 12 11 15 15 C 1.47171 * 125.65883 * 180.02562 * 11 9 2 16 16 C 1.52270 * 110.20857 * 83.42566 * 14 13 12 17 17 C 1.53316 * 109.42156 * 182.19899 * 16 14 13 18 18 N 1.46924 * 108.70903 * 306.49242 * 17 16 14 19 19 C 1.36939 * 120.56430 * 234.21650 * 18 17 16 20 20 H 1.07994 * 120.00294 * 152.07663 * 19 18 17 21 21 C 1.38813 * 119.99583 * 332.07622 * 19 18 17 22 22 N 1.31616 * 120.00150 * 342.48713 * 21 19 18 23 23 Si 1.86805 * 120.00036 * 162.48555 * 21 19 18 24 24 H 1.48503 * 109.46899 * 94.33110 * 23 21 19 25 25 H 1.48490 * 109.47304 * 214.33512 * 23 21 19 26 26 H 1.48499 * 109.47000 * 334.33608 * 23 21 19 27 27 C 1.46937 * 118.87231 * 54.22978 * 18 17 16 28 28 C 1.52281 * 110.20741 * 206.61416 * 14 13 12 29 29 H 1.09004 * 109.46799 * 300.00022 * 1 2 3 30 30 H 1.09001 * 109.47441 * 59.99433 * 1 2 3 31 31 H 1.08995 * 109.47266 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46940 * 59.99955 * 5 4 2 33 33 H 1.09009 * 109.46936 * 300.00554 * 5 4 2 34 34 H 1.09000 * 115.54653 * 330.58065 * 6 5 4 35 35 H 1.09001 * 117.49901 * 214.96820 * 7 6 5 36 36 H 1.08995 * 117.50182 * 359.97438 * 7 6 5 37 37 H 1.08995 * 117.50540 * 359.96893 * 8 6 5 38 38 H 1.09001 * 117.49842 * 144.99887 * 8 6 5 39 39 H 1.09007 * 110.35241 * 274.87086 * 12 11 9 40 40 H 1.08997 * 110.35755 * 37.16061 * 12 11 9 41 41 H 1.09000 * 111.19963 * 278.56779 * 13 12 11 42 42 H 1.08999 * 110.94487 * 154.64499 * 13 12 11 43 43 H 1.08996 * 109.90820 * 300.83390 * 15 11 9 44 44 H 1.08997 * 109.91056 * 61.91602 * 15 11 9 45 45 H 1.09006 * 109.47485 * 302.17796 * 16 14 13 46 46 H 1.08997 * 109.48282 * 62.21021 * 16 14 13 47 47 H 1.08995 * 109.59464 * 186.72170 * 17 16 14 48 48 H 1.08998 * 109.59801 * 66.25750 * 17 16 14 49 49 H 0.97004 * 120.00135 * 179.97438 * 22 21 19 50 50 H 1.09002 * 109.59545 * 185.99517 * 27 18 17 51 51 H 1.09000 * 109.72340 * 65.60458 * 27 18 17 52 52 H 1.09000 * 109.47606 * 297.76900 * 28 14 13 53 53 H 1.08993 * 109.48130 * 57.79757 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2002 0.1828 2.2940 6 6 2.7092 -0.6407 3.4787 7 6 4.1069 -0.3218 4.0128 8 6 2.8701 0.0766 4.8205 9 6 2.0323 -0.7103 -1.2306 10 8 2.6529 -1.7465 -1.1216 11 7 1.7918 -0.1940 -2.4521 12 6 1.0483 1.0492 -2.7289 13 6 1.5647 1.5195 -4.1153 14 6 1.7558 0.1709 -4.8447 15 6 2.2216 -0.7810 -3.7314 16 6 0.4333 -0.3002 -5.4344 17 6 0.6315 -1.6643 -6.1056 18 7 1.7404 -1.5612 -7.0640 19 6 1.5667 -1.9279 -8.3719 20 1 2.1615 -1.4658 -9.1459 21 6 0.6260 -2.8936 -8.7029 22 7 0.1520 -3.6962 -7.7738 23 14 0.0330 -3.0539 -10.4670 24 1 0.8387 -4.0858 -11.1682 25 1 -1.3972 -3.4533 -10.4741 26 1 0.1864 -1.7502 -11.1612 27 6 3.0390 -1.0583 -6.5952 28 6 2.8251 0.3019 -5.9211 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.2539 0.6546 2.5588 33 1 2.9321 0.9513 2.0449 34 1 2.3878 -1.6820 3.5000 35 1 4.7051 -1.1533 4.3856 36 1 4.6645 0.4746 3.5200 37 1 2.6138 1.1353 4.8592 38 1 2.6546 -0.4928 5.7246 39 1 -0.0227 0.8497 -2.7684 40 1 1.2673 1.7992 -1.9688 41 1 2.5114 2.0518 -4.0235 42 1 0.8201 2.1349 -4.6202 43 1 3.3075 -0.8722 -3.7517 44 1 1.7643 -1.7617 -3.8621 45 1 -0.3074 -0.3903 -4.6397 46 1 0.0872 0.4220 -6.1738 47 1 -0.2802 -1.9493 -6.6306 48 1 0.8700 -2.4125 -5.3498 49 1 -0.5056 -4.3708 -8.0050 50 1 3.7144 -0.9441 -7.4430 51 1 3.4674 -1.7585 -5.8781 52 1 2.5038 1.0302 -6.6657 53 1 3.7588 0.6337 -5.4673 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733286448.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:38 Heat of formation + Delta-G solvation = -51.520700 kcal Electronic energy + Delta-G solvation = -30373.992798 eV Core-core repulsion = 26439.252486 eV Total energy + Delta-G solvation = -3934.740312 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.72486 -40.23627 -39.05801 -37.54040 -37.32728 -34.90390 -33.13599 -32.12140 -31.63903 -30.57224 -28.18075 -28.06072 -26.58909 -24.94920 -23.97449 -23.69064 -23.26264 -22.20437 -21.77542 -20.48860 -19.74086 -18.57561 -18.41234 -17.51718 -17.09861 -16.98898 -16.84148 -16.56776 -15.80518 -15.72102 -15.44031 -15.26692 -14.86840 -14.83589 -14.69800 -14.43983 -14.13858 -13.99667 -13.76326 -13.48188 -13.38071 -13.15714 -13.05703 -12.99535 -12.73982 -12.58264 -12.52941 -12.38508 -12.32676 -12.15278 -12.00364 -11.91960 -11.82793 -11.46543 -11.41827 -11.29968 -11.06834 -10.99412 -10.87134 -10.52437 -10.39490 -9.70723 -8.66416 -7.86876 -5.32579 1.45866 1.46816 1.49863 1.57517 1.66721 2.51273 2.63570 2.97029 3.25890 3.36528 3.61850 3.68391 3.74115 3.79123 3.84280 3.88582 3.94538 4.03678 4.12194 4.24411 4.27557 4.32577 4.41841 4.46984 4.54205 4.61821 4.66705 4.67717 4.68769 4.71639 4.75119 4.76676 4.80322 4.88906 4.96737 5.00085 5.03318 5.11992 5.15776 5.18326 5.20713 5.24046 5.28544 5.36453 5.39112 5.43702 5.52120 5.65293 5.79023 6.11908 6.39067 6.50462 7.08960 7.14967 7.87151 8.38800 9.19051 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.024851 B = 0.002268 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.451530 B =12344.233465 C =12544.927262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.085 3.915 3 H 0.121 0.879 4 O -0.391 6.391 5 C 0.089 3.911 6 C -0.178 4.178 7 C -0.186 4.186 8 C -0.151 4.151 9 C 0.514 3.486 10 O -0.586 6.586 11 N -0.610 5.610 12 C 0.090 3.910 13 C -0.113 4.113 14 C -0.052 4.052 15 C 0.124 3.876 16 C -0.110 4.110 17 C 0.176 3.824 18 N -0.608 5.608 19 C -0.259 4.259 20 H 0.069 0.931 21 C -0.056 4.056 22 N -0.939 5.939 23 Si 0.968 3.032 24 H -0.289 1.289 25 H -0.293 1.293 26 H -0.265 1.265 27 C 0.136 3.864 28 C -0.104 4.104 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.045 0.955 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.106 0.894 39 H 0.085 0.915 40 H 0.113 0.887 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.051 0.949 44 H 0.032 0.968 45 H 0.064 0.936 46 H 0.068 0.932 47 H 0.052 0.948 48 H -0.017 1.017 49 H 0.248 0.752 50 H 0.053 0.947 51 H -0.001 1.001 52 H 0.074 0.926 53 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.786 19.520 21.224 28.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.024 3.976 3 H 0.138 0.862 4 O -0.310 6.310 5 C 0.013 3.987 6 C -0.196 4.196 7 C -0.223 4.223 8 C -0.188 4.188 9 C 0.303 3.697 10 O -0.466 6.466 11 N -0.345 5.345 12 C -0.030 4.030 13 C -0.151 4.151 14 C -0.053 4.053 15 C 0.001 3.999 16 C -0.149 4.149 17 C 0.051 3.949 18 N -0.331 5.331 19 C -0.389 4.389 20 H 0.086 0.914 21 C -0.251 4.251 22 N -0.585 5.585 23 Si 0.796 3.204 24 H -0.216 1.216 25 H -0.220 1.220 26 H -0.189 1.189 27 C 0.010 3.990 28 C -0.143 4.143 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.119 0.881 37 H 0.131 0.869 38 H 0.124 0.876 39 H 0.103 0.897 40 H 0.131 0.869 41 H 0.111 0.889 42 H 0.126 0.874 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.070 0.930 48 H 0.001 0.999 49 H 0.057 0.943 50 H 0.072 0.928 51 H 0.017 0.983 52 H 0.093 0.907 53 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.066 18.633 21.352 28.359 hybrid contribution -0.186 -1.435 -1.155 1.851 sum 0.880 17.198 20.197 26.542 Atomic orbital electron populations 1.22310 0.91652 1.03186 1.05470 1.21893 0.96271 0.96469 0.82985 0.86167 1.88030 1.86882 1.36104 1.20005 1.22313 1.00661 0.91679 0.84050 1.22145 1.01760 1.00712 0.94976 1.23161 0.90896 1.03890 1.04353 1.23070 1.00494 1.01837 0.93379 1.20979 0.79237 0.84915 0.84558 1.90701 1.42960 1.26124 1.86767 1.48634 1.55072 1.26411 1.04347 1.22898 0.96630 0.84732 0.98775 1.22922 1.03588 0.94967 0.93586 1.20886 0.95840 0.95383 0.93217 1.21869 0.98489 0.96663 0.82849 1.21864 0.95900 0.98004 0.99147 1.20615 0.91612 0.92744 0.89960 1.44321 1.06849 1.75262 1.06694 1.19546 1.19754 1.15108 0.84514 0.91350 1.25850 1.02457 0.95578 1.01189 1.70226 1.33362 1.20623 1.34290 0.85251 0.76924 0.78029 0.80178 1.21643 1.21951 1.18945 1.21120 0.87542 0.93887 0.96439 1.21772 0.97933 0.97415 0.97204 0.88422 0.88734 0.93607 0.90386 0.91904 0.88752 0.88792 0.88115 0.86856 0.87554 0.89659 0.86862 0.88900 0.87383 0.93092 0.94928 0.91702 0.91327 0.93006 0.99905 0.94280 0.92800 0.98263 0.90722 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.70 9.39 71.98 0.68 -2.03 16 2 C 0.08 1.78 2.48 29.85 0.07 1.86 16 3 H 0.12 1.58 7.27 -2.38 -0.02 1.56 16 4 O -0.39 -10.11 9.53 -129.99 -1.24 -11.35 16 5 C 0.09 1.46 6.03 71.98 0.43 1.89 16 6 C -0.18 -3.04 6.06 -10.80 -0.07 -3.11 16 7 C -0.19 -2.70 10.18 30.59 0.31 -2.39 16 8 C -0.15 -1.66 10.25 30.59 0.31 -1.34 16 9 C 0.51 16.27 7.24 87.66 0.63 16.91 16 10 O -0.59 -25.80 16.84 15.96 0.27 -25.54 16 11 N -0.61 -16.85 3.33 -811.82 -2.70 -19.55 16 12 C 0.09 1.49 5.02 86.96 0.44 1.93 16 13 C -0.11 -1.99 6.00 31.88 0.19 -1.80 16 14 C -0.05 -1.52 0.53 -51.91 -0.03 -1.54 16 15 C 0.12 4.27 5.05 86.49 0.44 4.70 16 16 C -0.11 -3.83 4.78 30.46 0.15 -3.68 16 17 C 0.18 8.62 5.03 86.40 0.43 9.06 16 18 N -0.61 -30.87 2.98 -698.61 -2.08 -32.95 16 19 C -0.26 -14.40 9.58 84.03 0.80 -13.59 16 20 H 0.07 3.67 7.89 -2.91 -0.02 3.65 16 21 C -0.06 -3.18 4.90 84.86 0.42 -2.77 16 22 N -0.94 -57.41 11.20 21.65 0.24 -57.17 16 23 Si 0.97 45.46 29.59 68.60 2.03 47.49 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 26 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 27 C 0.14 5.70 6.24 86.40 0.54 6.23 16 28 C -0.10 -3.20 4.71 30.46 0.14 -3.05 16 29 H 0.10 1.01 7.87 -2.39 -0.02 0.99 16 30 H 0.09 1.16 5.55 -2.39 -0.01 1.14 16 31 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 0.88 7.87 -2.39 -0.02 0.87 16 33 H 0.06 0.85 7.82 -2.38 -0.02 0.83 16 34 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 36 H 0.10 1.32 8.03 -2.39 -0.02 1.30 16 37 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.09 1.26 6.76 -2.38 -0.02 1.24 16 40 H 0.11 1.00 7.33 -2.39 -0.02 0.98 16 41 H 0.09 1.38 8.01 -2.39 -0.02 1.36 16 42 H 0.11 1.50 8.01 -2.39 -0.02 1.49 16 43 H 0.05 1.87 7.59 -2.39 -0.02 1.85 16 44 H 0.03 1.42 6.08 -2.39 -0.01 1.40 16 45 H 0.06 2.03 7.47 -2.38 -0.02 2.01 16 46 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 47 H 0.05 2.89 6.02 -2.39 -0.01 2.87 16 48 H -0.02 -0.94 6.53 -2.39 -0.02 -0.95 16 49 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 50 H 0.05 2.21 7.93 -2.39 -0.02 2.19 16 51 H 0.00 -0.03 7.47 -2.39 -0.02 -0.04 16 52 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 53 H 0.08 2.05 8.10 -2.39 -0.02 2.03 16 Total: -1.00 -80.75 403.16 3.29 -77.46 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: 0.88 Total: 14.33 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 5.90 Total: 7.27 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -4.55 Total: -109.68 kcal Atomic # 8 Polarization: -35.91 SS G_CDS: -0.97 Total: -36.88 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -80.75 3.29 -77.46 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733286448.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.942 kcal (2) G-P(sol) polarization free energy of solvation -80.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds