Wall clock time and date at job start Tue Mar 31 2020 20:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42895 * 114.00128 * 2 1 4 4 C 1.52997 * 109.47503 * 210.00358 * 3 2 1 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47328 * 60.00126 * 5 4 3 7 7 C 1.52997 * 109.46975 * 180.02562 * 6 5 4 8 8 C 1.50707 * 109.47376 * 184.99777 * 7 6 5 9 9 O 1.21282 * 119.99303 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00263 * 180.02562 * 8 7 6 11 11 C 1.46497 * 119.99669 * 180.02562 * 10 8 7 12 12 H 1.09003 * 110.56225 * 34.29774 * 11 10 8 13 13 C 1.54845 * 110.62654 * 271.39645 * 11 10 8 14 14 C 1.55850 * 103.44791 * 241.51279 * 13 11 10 15 15 H 1.08993 * 115.56224 * 158.81494 * 14 13 11 16 16 C 1.55848 * 105.06143 * 288.17568 * 14 13 11 17 17 C 1.55163 * 103.50042 * 71.74130 * 16 14 13 18 18 C 1.55839 * 103.41694 * 0.05994 * 17 16 14 19 19 H 1.09003 * 116.12964 * 159.23127 * 18 17 16 20 20 N 1.50237 * 101.04767 * 32.93848 * 14 13 11 21 21 C 1.36936 * 130.84000 * 126.05488 * 20 14 13 22 22 H 1.08003 * 120.00372 * 179.97438 * 21 20 14 23 23 C 1.38810 * 119.99653 * 359.96567 * 21 20 14 24 24 N 1.31619 * 120.00421 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99845 * 180.02562 * 23 21 20 26 26 H 1.48491 * 109.47492 * 60.00034 * 25 23 21 27 27 H 1.48505 * 109.47184 * 180.02562 * 25 23 21 28 28 H 1.48503 * 109.46908 * 299.99955 * 25 23 21 29 29 C 1.53002 * 109.46891 * 299.99597 * 6 5 4 30 30 C 1.52997 * 109.46978 * 60.00410 * 29 6 5 31 31 H 1.09005 * 109.46999 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46516 * 299.99257 * 1 2 3 33 33 H 1.08996 * 109.47248 * 59.99618 * 1 2 3 34 34 H 1.08998 * 109.47064 * 330.01060 * 3 2 1 35 35 H 1.09002 * 109.47153 * 60.00043 * 4 3 2 36 36 H 1.09001 * 109.46832 * 300.00234 * 4 3 2 37 37 H 1.09004 * 109.46724 * 180.02562 * 5 4 3 38 38 H 1.09001 * 109.47194 * 299.99650 * 5 4 3 39 39 H 1.08992 * 109.47554 * 59.99639 * 6 5 4 40 40 H 1.08994 * 109.47445 * 304.99750 * 7 6 5 41 41 H 1.09000 * 109.47459 * 65.00057 * 7 6 5 42 42 H 0.96996 * 119.99578 * 359.97438 * 10 8 7 43 43 H 1.09003 * 110.63088 * 0.02562 * 13 11 10 44 44 H 1.09004 * 110.63153 * 122.86655 * 13 11 10 45 45 H 1.09003 * 110.62290 * 190.31275 * 16 14 13 46 46 H 1.09000 * 110.62657 * 313.33297 * 16 14 13 47 47 H 1.09002 * 110.56870 * 241.61107 * 17 16 14 48 48 H 1.09001 * 110.84756 * 118.63746 * 17 16 14 49 49 H 0.96998 * 120.00219 * 180.02562 * 24 23 21 50 50 H 1.09002 * 109.47097 * 180.02562 * 29 6 5 51 51 H 1.09001 * 109.47142 * 300.00176 * 29 6 5 52 52 H 1.09001 * 109.47375 * 59.99908 * 30 29 6 53 53 H 1.09000 * 109.47140 * 179.97438 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2633 -0.7213 5 6 3.9814 2.6609 -0.7207 6 6 4.1890 3.1261 0.7220 7 6 4.8110 4.5240 0.7225 8 6 5.1286 4.9321 2.1381 9 8 4.8813 4.1790 3.0561 10 7 5.6864 6.1341 2.3839 11 6 5.9956 6.5304 3.7599 12 1 6.2998 5.6648 4.3485 13 6 4.7794 7.2330 4.4116 14 6 5.3161 8.6596 4.7364 15 1 4.5560 9.4300 4.8657 16 6 6.3008 8.4603 5.9279 17 6 7.5193 7.7543 5.2766 18 6 7.1049 7.6250 3.7799 19 1 7.9175 7.4841 3.0672 20 7 6.2770 8.8711 3.6010 21 6 6.3722 9.8850 2.6855 22 1 7.1445 9.8605 1.9309 23 6 5.4759 10.9441 2.7272 24 7 4.5349 10.9742 3.6470 25 14 5.6052 12.3268 1.4778 26 1 5.4438 11.7740 0.1091 27 1 4.5400 13.3288 1.7363 28 1 6.9350 12.9773 1.5953 29 6 2.8404 3.1683 1.4433 30 6 2.2178 1.7707 1.4427 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3632 0.5137 0.8901 33 1 -0.3633 0.5139 -0.8899 34 1 1.3450 1.9993 -0.5137 35 1 3.2111 0.9314 -1.7490 36 1 4.0242 0.5693 -0.2075 37 1 4.9421 2.6309 -1.2350 38 1 3.3163 3.3552 -1.2342 39 1 4.8541 2.4320 1.2355 40 1 5.7277 4.5141 0.1329 41 1 4.1077 5.2348 0.2887 42 1 5.8838 6.7364 1.6497 43 1 3.9459 7.2863 3.7112 44 1 4.4802 6.7160 5.3234 45 1 6.5933 9.4221 6.3493 46 1 5.8545 7.8247 6.6927 47 1 7.6731 6.7700 5.7189 48 1 8.4183 8.3628 5.3748 49 1 3.9084 11.7141 3.6758 50 1 2.9882 3.5002 2.4709 51 1 2.1752 3.8626 0.9297 52 1 2.8830 1.0765 1.9563 53 1 1.2572 1.8007 1.9570 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098511549.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:43:15 Heat of formation + Delta-G solvation = -80.480018 kcal Electronic energy + Delta-G solvation = -30350.517955 eV Core-core repulsion = 26414.521873 eV Total energy + Delta-G solvation = -3935.996083 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.36050 -40.47755 -39.55511 -37.48911 -35.19046 -34.37550 -32.90581 -31.71302 -30.93930 -30.45511 -29.56137 -28.04919 -26.67387 -26.02290 -23.69494 -23.22877 -22.19750 -21.50440 -20.98603 -20.75112 -20.20398 -18.82128 -17.85270 -17.57127 -17.22226 -16.77081 -16.71817 -16.12999 -15.99053 -15.73500 -15.55230 -15.17437 -14.89005 -14.76543 -14.56700 -14.11406 -13.81896 -13.70147 -13.61474 -13.25099 -13.09698 -12.89474 -12.79870 -12.77726 -12.76882 -12.60622 -12.41304 -12.09257 -12.04077 -11.97541 -11.90296 -11.76471 -11.68394 -11.56080 -11.46928 -11.19355 -11.13781 -10.92682 -10.87457 -10.54452 -10.27202 -9.83116 -8.85183 -7.73599 -5.13421 1.50654 1.52446 1.58219 1.80739 2.42316 2.52267 2.82304 3.39424 3.45936 3.74335 3.75082 3.84436 3.97547 4.05516 4.10161 4.15823 4.28057 4.29593 4.39452 4.45941 4.47932 4.50047 4.50732 4.54115 4.56386 4.60114 4.64811 4.69601 4.73395 4.81964 4.84178 4.85294 4.91357 4.97205 5.05304 5.10245 5.15055 5.16563 5.18454 5.20719 5.23899 5.30254 5.38947 5.50279 5.54198 5.56476 5.64338 5.78978 5.91451 6.28467 6.29766 6.77144 7.07543 7.43494 7.74544 8.60640 9.33565 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.015308 B = 0.002564 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.673251 B =10915.902486 C =11677.606216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.089 3.911 4 C -0.112 4.112 5 C -0.104 4.104 6 C -0.066 4.066 7 C -0.131 4.131 8 C 0.505 3.495 9 O -0.581 6.581 10 N -0.709 5.709 11 C 0.142 3.858 12 H 0.081 0.919 13 C -0.131 4.131 14 C 0.141 3.859 15 H 0.114 0.886 16 C -0.132 4.132 17 C -0.119 4.119 18 C 0.127 3.873 19 H 0.104 0.896 20 N -0.610 5.610 21 C -0.213 4.213 22 H 0.086 0.914 23 C -0.069 4.069 24 N -0.949 5.949 25 Si 0.975 3.025 26 H -0.277 1.277 27 H -0.303 1.303 28 H -0.283 1.283 29 C -0.115 4.115 30 C -0.132 4.132 31 H 0.096 0.904 32 H 0.041 0.959 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.061 0.939 37 H 0.087 0.913 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.118 0.882 41 H 0.103 0.897 42 H 0.406 0.594 43 H 0.032 0.968 44 H 0.060 0.940 45 H 0.037 0.963 46 H 0.068 0.932 47 H 0.080 0.920 48 H 0.059 0.941 49 H 0.244 0.756 50 H 0.056 0.944 51 H 0.061 0.939 52 H 0.055 0.945 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.968 -17.719 -8.666 19.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.328 6.328 3 C 0.031 3.969 4 C -0.149 4.149 5 C -0.142 4.142 6 C -0.085 4.085 7 C -0.171 4.171 8 C 0.293 3.707 9 O -0.462 6.462 10 N -0.358 5.358 11 C 0.035 3.965 12 H 0.099 0.901 13 C -0.172 4.172 14 C 0.034 3.966 15 H 0.131 0.869 16 C -0.172 4.172 17 C -0.159 4.159 18 C 0.020 3.980 19 H 0.122 0.878 20 N -0.331 5.331 21 C -0.342 4.342 22 H 0.104 0.896 23 C -0.261 4.261 24 N -0.599 5.599 25 Si 0.804 3.196 26 H -0.203 1.203 27 H -0.230 1.230 28 H -0.210 1.210 29 C -0.152 4.152 30 C -0.170 4.170 31 H 0.115 0.885 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.094 0.906 39 H 0.081 0.919 40 H 0.136 0.864 41 H 0.121 0.879 42 H 0.240 0.760 43 H 0.051 0.949 44 H 0.079 0.921 45 H 0.056 0.944 46 H 0.087 0.913 47 H 0.098 0.902 48 H 0.078 0.922 49 H 0.054 0.946 50 H 0.075 0.925 51 H 0.080 0.920 52 H 0.074 0.926 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.104 -18.129 -8.168 19.995 hybrid contribution -0.442 1.629 -0.286 1.712 sum -2.546 -16.500 -8.454 18.714 Atomic orbital electron populations 1.22940 0.80065 1.03637 1.00514 1.87866 1.20996 1.28801 1.95175 1.22252 0.95575 0.83972 0.95075 1.21555 0.94653 0.97899 1.00834 1.21541 1.02161 0.95548 0.94939 1.20866 0.96211 0.94693 0.96707 1.21786 1.04233 0.98815 0.92266 1.21316 0.76056 0.80685 0.92634 1.90617 1.54229 1.53279 1.48082 1.46061 1.62416 1.17876 1.09480 1.22333 0.95611 0.95994 0.82595 0.90086 1.23294 0.96968 0.97993 0.98941 1.23561 0.92990 0.93902 0.86154 0.86858 1.23009 0.97422 0.98745 0.97981 1.22872 0.97369 1.00081 0.95585 1.23447 0.92694 0.85738 0.96135 0.87803 1.46808 1.32924 1.20587 1.32818 1.19328 1.11052 0.97593 1.06192 0.89577 1.25433 0.98476 1.01107 1.01094 1.69718 1.20549 1.32602 1.37073 0.85196 0.76444 0.78981 0.78940 1.20262 1.22955 1.20965 1.21595 0.96243 0.96133 1.01247 1.21926 1.00610 0.96992 0.97440 0.88537 0.94045 0.93005 0.91355 0.90244 0.91971 0.89475 0.90591 0.91868 0.86410 0.87900 0.75950 0.94879 0.92147 0.94369 0.91342 0.90193 0.92189 0.94596 0.92547 0.92010 0.92639 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 10.82 113.37 1.23 1.59 16 2 O -0.41 -8.52 10.35 -148.98 -1.54 -10.06 16 3 C 0.09 1.68 2.61 30.60 0.08 1.76 16 4 C -0.11 -1.86 5.57 30.59 0.17 -1.69 16 5 C -0.10 -1.56 5.20 30.59 0.16 -1.40 16 6 C -0.07 -1.36 1.84 -10.80 -0.02 -1.38 16 7 C -0.13 -2.74 5.17 29.85 0.15 -2.59 16 8 C 0.50 15.22 7.55 87.66 0.66 15.88 16 9 O -0.58 -21.37 13.65 -3.03 -0.04 -21.41 16 10 N -0.71 -22.49 5.09 -434.91 -2.21 -24.70 16 11 C 0.14 5.01 2.75 46.61 0.13 5.14 16 12 H 0.08 2.85 7.30 -2.39 -0.02 2.83 16 13 C -0.13 -5.35 6.22 32.21 0.20 -5.15 16 14 C 0.14 6.43 4.72 46.23 0.22 6.64 16 15 H 0.11 6.17 5.52 -2.39 -0.01 6.15 16 16 C -0.13 -5.12 6.45 32.32 0.21 -4.91 16 17 C -0.12 -4.03 6.46 32.32 0.21 -3.82 16 18 C 0.13 4.61 5.07 46.14 0.23 4.85 16 19 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 20 N -0.61 -28.16 2.99 -614.17 -1.84 -30.00 16 21 C -0.21 -10.85 10.59 84.03 0.89 -9.96 16 22 H 0.09 4.13 7.83 -2.91 -0.02 4.10 16 23 C -0.07 -3.68 5.50 84.86 0.47 -3.21 16 24 N -0.95 -54.38 10.47 21.65 0.23 -54.15 16 25 Si 0.97 43.70 29.55 68.60 2.03 45.73 16 26 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 27 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 28 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 29 C -0.11 -2.73 4.94 30.59 0.15 -2.58 16 30 C -0.13 -2.93 5.54 30.60 0.17 -2.76 16 31 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 32 H 0.04 0.59 7.87 -2.39 -0.02 0.58 16 33 H 0.05 0.63 8.08 -2.39 -0.02 0.61 16 34 H 0.07 1.15 7.79 -2.39 -0.02 1.14 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 1.53 7.95 -2.39 -0.02 1.51 16 40 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.41 12.28 8.64 -92.71 -0.80 11.48 16 43 H 0.03 1.48 7.98 -2.39 -0.02 1.46 16 44 H 0.06 2.31 7.82 -2.38 -0.02 2.29 16 45 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.07 2.34 7.82 -2.39 -0.02 2.32 16 47 H 0.08 2.28 7.82 -2.39 -0.02 2.26 16 48 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.24 13.87 8.31 -92.71 -0.77 13.10 16 50 H 0.06 1.74 5.95 -2.39 -0.01 1.72 16 51 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 52 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 53 H 0.06 1.26 7.87 -2.39 -0.02 1.24 16 Total: -1.00 -64.77 402.67 2.01 -62.76 By element: Atomic # 1 Polarization: 35.35 SS G_CDS: 0.08 Total: 35.43 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 5.31 Total: -3.59 kcal Atomic # 7 Polarization: -105.03 SS G_CDS: -3.82 Total: -108.85 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -1.58 Total: -31.47 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.73 kcal Total: -64.77 2.01 -62.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098511549.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.722 kcal (2) G-P(sol) polarization free energy of solvation -64.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds