Wall clock time and date at job start Tue Mar 31 2020 19:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00450 * 2 1 4 4 H 1.09007 * 109.46889 * 329.99951 * 3 2 1 5 5 C 1.53002 * 109.47233 * 89.99663 * 3 2 1 6 6 C 1.52998 * 109.47031 * 180.02562 * 5 3 2 7 7 C 1.52996 * 109.47133 * 299.99688 * 6 5 3 8 8 C 1.53002 * 109.46907 * 60.00236 * 7 6 5 9 9 H 1.09007 * 109.46948 * 59.99843 * 8 7 6 10 10 C 1.50701 * 109.46977 * 179.97438 * 8 7 6 11 11 O 1.21285 * 119.99933 * 95.37321 * 10 8 7 12 12 N 1.34774 * 120.00220 * 275.36780 * 10 8 7 13 13 C 1.46889 * 120.46362 * 4.93548 * 12 10 8 14 14 C 1.52856 * 109.01794 * 235.48447 * 13 12 10 15 15 C 1.52675 * 109.18096 * 307.82421 * 14 13 12 16 16 C 1.53482 * 113.62283 * 188.98866 * 15 14 13 17 17 N 1.47671 * 85.98646 * 137.70720 * 16 15 14 18 18 C 1.36933 * 134.45788 * 155.70348 * 17 16 15 19 19 H 1.07999 * 120.00166 * 179.97438 * 18 17 16 20 20 C 1.38812 * 119.99950 * 359.96655 * 18 17 16 21 21 N 1.31620 * 120.00102 * 0.02562 * 20 18 17 22 22 Si 1.86808 * 120.00142 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.46870 * 89.99960 * 22 20 18 24 24 H 1.48497 * 109.46911 * 210.00167 * 22 20 18 25 25 H 1.48497 * 109.46574 * 330.00089 * 22 20 18 26 26 C 1.47665 * 91.08558 * 335.67742 * 17 16 15 27 27 C 1.52669 * 113.18287 * 57.45622 * 15 14 13 28 28 C 1.46879 * 120.46997 * 185.21468 * 12 10 8 29 29 C 1.53001 * 109.47390 * 299.99778 * 8 7 6 30 30 H 1.08993 * 109.47470 * 300.00142 * 1 2 3 31 31 H 1.09001 * 109.46817 * 60.00593 * 1 2 3 32 32 H 1.09000 * 109.47395 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46981 * 300.00309 * 5 3 2 34 34 H 1.08999 * 109.47023 * 59.99991 * 5 3 2 35 35 H 1.09004 * 109.47033 * 179.97438 * 6 5 3 36 36 H 1.09001 * 109.46840 * 60.00276 * 6 5 3 37 37 H 1.08993 * 109.47429 * 300.00136 * 7 6 5 38 38 H 1.08996 * 109.47169 * 179.97438 * 7 6 5 39 39 H 1.08997 * 109.58767 * 355.31242 * 13 12 10 40 40 H 1.09002 * 109.58732 * 115.75123 * 13 12 10 41 41 H 1.09000 * 109.60859 * 187.83843 * 14 13 12 42 42 H 1.09004 * 109.38471 * 67.66453 * 14 13 12 43 43 H 1.08996 * 113.79153 * 251.97239 * 16 15 14 44 44 H 1.08996 * 113.78798 * 23.44074 * 16 15 14 45 45 H 0.96994 * 120.00402 * 180.02562 * 21 20 18 46 46 H 1.08997 * 113.79662 * 270.05043 * 26 17 16 47 47 H 1.09009 * 113.79251 * 138.57845 * 26 17 16 48 48 H 1.09001 * 109.52840 * 182.52427 * 27 15 14 49 49 H 1.08995 * 109.53311 * 62.30802 * 27 15 14 50 50 H 1.09001 * 109.58692 * 244.26001 * 28 12 10 51 51 H 1.09003 * 109.58353 * 4.54118 * 28 12 10 52 52 H 1.08993 * 109.46934 * 300.00092 * 29 8 7 53 53 H 1.08994 * 109.47429 * 180.02562 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 -0.5139 5 6 2.2177 1.7714 1.4425 6 6 2.8395 3.1693 1.4425 7 6 4.1881 3.1275 0.7212 8 6 3.9807 2.6616 -0.7213 9 1 3.3151 3.3553 -1.2351 10 6 5.3090 2.6210 -1.4320 11 8 5.9299 1.5813 -1.4982 12 7 5.8070 3.7402 -1.9942 13 6 5.1180 5.0268 -1.8284 14 6 4.8271 5.6174 -3.2079 15 6 6.1173 5.6456 -4.0238 16 6 5.9930 6.4173 -5.3446 17 7 7.3186 6.9812 -5.0198 18 6 8.3403 7.5161 -5.7580 19 1 9.2345 7.8694 -5.2661 20 6 8.2269 7.6041 -7.1387 21 7 7.1370 7.1739 -7.7382 22 14 9.6211 8.3332 -8.1459 23 1 10.5627 7.2550 -8.5408 24 1 9.0674 8.9776 -9.3638 25 1 10.3412 9.3464 -7.3335 26 6 7.1004 6.7378 -3.5798 27 6 6.7614 4.2699 -4.1773 28 6 7.0428 3.6893 -2.7863 29 6 3.3589 1.2636 -0.7214 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 1.2568 1.8015 1.9563 34 1 2.8828 1.0774 1.9564 35 1 2.9868 3.5014 2.4701 36 1 2.1739 3.8629 0.9287 37 1 4.8536 2.4339 1.2349 38 1 4.6309 4.1235 0.7207 39 1 4.1809 4.8733 -1.2934 40 1 5.7536 5.7120 -1.2675 41 1 4.4431 6.6316 -3.0980 42 1 4.0873 4.9998 -3.7172 43 1 5.9913 5.7791 -6.2282 44 1 5.1905 7.1548 -5.3491 45 1 7.0578 7.2351 -8.7030 46 1 6.6269 7.5706 -3.0598 47 1 7.9787 6.3541 -3.0606 48 1 7.6970 4.3651 -4.7285 49 1 6.0843 3.6088 -4.7180 50 1 7.8168 4.2782 -2.2941 51 1 7.3746 2.6552 -2.8798 52 1 4.0244 0.5700 -0.2077 53 1 3.2115 0.9315 -1.7490 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035779594.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:42 Heat of formation + Delta-G solvation = -62.105327 kcal Electronic energy + Delta-G solvation = -30650.286461 eV Core-core repulsion = 26715.087164 eV Total energy + Delta-G solvation = -3935.199296 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 336.220 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.82436 -40.59574 -39.48794 -37.21181 -37.03645 -34.40942 -32.76835 -32.03654 -31.61011 -30.81149 -28.64665 -27.29991 -26.74612 -25.55154 -24.72654 -23.70641 -23.31258 -22.68948 -21.18955 -20.29332 -18.99916 -18.68937 -18.02592 -17.50679 -16.87208 -16.71159 -16.51410 -16.09582 -16.03287 -16.00241 -15.65227 -15.39448 -15.04775 -14.85690 -14.69306 -14.36652 -14.17683 -14.03278 -13.64252 -13.61031 -13.40111 -13.13110 -13.04868 -12.91140 -12.81775 -12.63796 -12.58848 -12.31317 -12.19292 -12.14017 -11.96985 -11.65390 -11.63240 -11.52398 -11.45559 -11.43114 -11.17166 -11.00629 -10.80799 -10.66542 -10.30874 -9.57663 -8.86186 -7.88540 -5.20157 1.43890 1.45557 1.53732 1.61430 2.00484 2.48090 2.83912 3.32320 3.42563 3.44521 3.63175 3.73556 3.89986 3.91914 3.97541 4.10195 4.16890 4.19661 4.26538 4.30722 4.35355 4.42795 4.45107 4.47316 4.56086 4.59371 4.66333 4.68232 4.72520 4.77960 4.82071 4.89019 4.91993 4.96168 5.00894 5.05756 5.09276 5.15220 5.15957 5.19581 5.23709 5.26222 5.30810 5.32144 5.37041 5.48030 5.56988 5.61709 5.78448 5.98588 6.33935 6.48393 6.95274 7.19179 7.64294 8.61501 9.28228 Molecular weight = 336.22amu Principal moments of inertia in cm(-1) A = 0.026114 B = 0.002315 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.950389 B =12090.550909 C =12206.189149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.092 3.908 4 H 0.080 0.920 5 C -0.139 4.139 6 C -0.107 4.107 7 C -0.109 4.109 8 C -0.094 4.094 9 H 0.122 0.878 10 C 0.515 3.485 11 O -0.590 6.590 12 N -0.603 5.603 13 C 0.108 3.892 14 C -0.114 4.114 15 C -0.081 4.081 16 C 0.168 3.832 17 N -0.641 5.641 18 C -0.227 4.227 19 H 0.081 0.919 20 C -0.070 4.070 21 N -0.954 5.954 22 Si 0.974 3.026 23 H -0.288 1.288 24 H -0.295 1.295 25 H -0.269 1.269 26 C 0.130 3.870 27 C -0.088 4.088 28 C 0.124 3.876 29 C -0.096 4.096 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.056 0.944 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.120 0.880 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.031 0.969 44 H 0.018 0.982 45 H 0.246 0.754 46 H 0.053 0.947 47 H 0.048 0.952 48 H 0.052 0.948 49 H 0.053 0.947 50 H 0.074 0.926 51 H 0.073 0.927 52 H 0.055 0.945 53 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.367 -7.608 21.755 27.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.334 6.334 3 C 0.034 3.966 4 H 0.097 0.903 5 C -0.177 4.177 6 C -0.145 4.145 7 C -0.147 4.147 8 C -0.115 4.115 9 H 0.139 0.861 10 C 0.305 3.695 11 O -0.471 6.471 12 N -0.335 5.335 13 C -0.013 4.013 14 C -0.153 4.153 15 C -0.082 4.082 16 C 0.043 3.957 17 N -0.367 5.367 18 C -0.356 4.356 19 H 0.098 0.902 20 C -0.263 4.263 21 N -0.604 5.604 22 Si 0.802 3.198 23 H -0.216 1.216 24 H -0.222 1.222 25 H -0.194 1.194 26 C 0.005 3.995 27 C -0.127 4.127 28 C 0.001 3.999 29 C -0.134 4.134 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.138 0.862 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.049 0.951 44 H 0.036 0.964 45 H 0.055 0.945 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.092 0.908 51 H 0.092 0.908 52 H 0.074 0.926 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.748 -8.187 21.459 27.295 hybrid contribution 0.920 0.493 -1.592 1.904 sum -13.828 -7.694 19.867 25.399 Atomic orbital electron populations 1.22954 0.79628 1.03577 1.00942 1.87890 1.21360 1.28891 1.95259 1.22169 0.93701 0.84392 0.96293 0.90252 1.22040 1.01917 0.97763 0.95997 1.21474 0.95136 0.96048 1.01800 1.21575 0.99197 1.02311 0.91605 1.21303 0.92824 0.99000 0.98364 0.86060 1.21182 0.87891 0.82320 0.78130 1.90664 1.62450 1.32309 1.61644 1.48195 1.25586 1.09075 1.50599 1.21978 0.99018 0.83237 0.97073 1.21745 0.95668 1.02553 0.95346 1.22086 0.96006 0.93873 0.96274 1.22178 0.86068 0.92654 0.94845 1.46350 1.15036 1.72475 1.02889 1.19387 0.95010 1.32087 0.89136 0.90162 1.25569 1.00022 1.03127 0.97567 1.70007 1.28482 1.53678 1.08215 0.85146 0.78506 0.78011 0.78106 1.21554 1.22210 1.19352 1.22783 0.96155 0.94621 0.85893 1.21338 1.00263 0.94809 0.96278 1.21410 0.86561 1.01407 0.90529 1.21315 0.95841 0.95779 1.00482 0.92664 0.93270 0.89106 0.90389 0.92491 0.89646 0.89493 0.92677 0.89282 0.86186 0.89549 0.88950 0.91286 0.95084 0.96393 0.94498 0.92931 0.93408 0.92966 0.92859 0.90765 0.90827 0.92571 0.92792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 10.82 113.37 1.23 1.52 16 2 O -0.41 -8.00 10.35 -148.98 -1.54 -9.54 16 3 C 0.09 1.43 2.61 30.60 0.08 1.51 16 4 H 0.08 0.94 7.79 -2.38 -0.02 0.92 16 5 C -0.14 -1.67 5.54 30.59 0.17 -1.50 16 6 C -0.11 -0.90 5.92 30.59 0.18 -0.72 16 7 C -0.11 -1.39 4.98 30.59 0.15 -1.23 16 8 C -0.09 -1.60 1.66 -11.54 -0.02 -1.62 16 9 H 0.12 1.45 6.53 -2.38 -0.02 1.43 16 10 C 0.51 13.23 6.80 87.66 0.60 13.83 16 11 O -0.59 -20.64 15.50 -3.04 -0.05 -20.69 16 12 N -0.60 -14.48 2.95 -819.49 -2.42 -16.90 16 13 C 0.11 1.88 5.68 86.26 0.49 2.37 16 14 C -0.11 -2.63 5.24 30.44 0.16 -2.47 16 15 C -0.08 -2.73 0.77 -52.03 -0.04 -2.77 16 16 C 0.17 7.77 6.64 86.31 0.57 8.34 16 17 N -0.64 -32.22 3.53 -722.68 -2.55 -34.78 16 18 C -0.23 -12.78 10.70 84.03 0.90 -11.88 16 19 H 0.08 4.32 7.83 -2.91 -0.02 4.30 16 20 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 21 N -0.95 -58.30 11.39 21.65 0.25 -58.06 16 22 Si 0.97 46.39 29.55 68.60 2.03 48.41 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 24 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 25 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 26 C 0.13 4.82 7.73 86.32 0.67 5.48 16 27 C -0.09 -3.05 5.22 30.60 0.16 -2.89 16 28 C 0.12 3.61 6.29 86.42 0.54 4.16 16 29 C -0.10 -1.98 4.38 30.59 0.13 -1.84 16 30 H 0.05 0.48 7.87 -2.39 -0.02 0.46 16 31 H 0.05 0.50 8.09 -2.39 -0.02 0.48 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 0.73 7.87 -2.38 -0.02 0.71 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.08 0.54 8.14 -2.38 -0.02 0.53 16 36 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.09 0.87 7.27 -2.39 -0.02 0.86 16 39 H 0.12 1.23 4.99 -2.39 -0.01 1.22 16 40 H 0.09 1.34 8.08 -2.39 -0.02 1.32 16 41 H 0.09 1.91 8.12 -2.39 -0.02 1.89 16 42 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 43 H 0.03 1.67 7.12 -2.39 -0.02 1.65 16 44 H 0.02 0.85 8.09 -2.39 -0.02 0.83 16 45 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 46 H 0.05 1.77 8.07 -2.39 -0.02 1.75 16 47 H 0.05 1.70 7.41 -2.38 -0.02 1.69 16 48 H 0.05 2.15 8.01 -2.39 -0.02 2.13 16 49 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 50 H 0.07 2.06 7.49 -2.39 -0.02 2.04 16 51 H 0.07 2.37 7.00 -2.39 -0.02 2.36 16 52 H 0.06 1.44 7.87 -2.39 -0.02 1.43 16 53 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -75.96 400.00 3.02 -72.94 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: 0.87 Total: 11.91 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 6.44 Total: 6.70 kcal Atomic # 7 Polarization: -105.01 SS G_CDS: -4.72 Total: -109.73 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -1.59 Total: -30.23 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -75.96 3.02 -72.94 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035779594.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.832 kcal (2) G-P(sol) polarization free energy of solvation -75.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds