Wall clock time and date at job start Tue Mar 31 2020 20:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31422 * 1 3 3 Si 1.86801 * 119.99618 * 2 1 4 4 H 1.48494 * 109.46892 * 239.99838 * 3 2 1 5 5 H 1.48498 * 109.47167 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47041 * 119.99590 * 3 2 1 7 7 C 1.38793 * 120.00298 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00416 * 180.02562 * 7 2 1 9 9 O 1.34858 * 119.99960 * 359.97438 * 7 2 1 10 10 C 1.34767 * 117.00145 * 179.97438 * 9 7 2 11 11 O 1.21539 * 120.00023 * 0.02562 * 10 9 7 12 12 C 1.47427 * 120.00540 * 179.97438 * 10 9 7 13 13 C 1.39837 * 120.07967 * 0.28043 * 12 10 9 14 14 C 1.37660 * 119.90885 * 180.22952 * 13 12 10 15 15 C 1.39114 * 120.08667 * 359.47066 * 14 13 12 16 16 N 1.39677 * 119.91342 * 180.27799 * 15 14 13 17 17 C 1.34525 * 124.45925 * 359.69847 * 16 15 14 18 18 O 1.21441 * 125.70751 * 0.02562 * 17 16 15 19 19 C 1.47793 * 108.58566 * 179.90588 * 17 16 15 20 20 C 1.38566 * 134.30912 * 180.15427 * 19 17 16 21 21 C 1.38622 * 119.71644 * 180.27691 * 20 19 17 22 22 C 1.38231 * 120.46326 * 359.96074 * 21 20 19 23 23 C 1.38605 * 120.46845 * 359.97438 * 22 21 20 24 24 C 1.38570 * 119.71720 * 0.02562 * 23 22 21 25 25 C 1.34527 * 124.45695 * 179.97438 * 16 15 14 26 26 O 1.21442 * 125.70859 * 359.96809 * 25 16 15 27 27 C 1.39109 * 120.17372 * 0.29714 * 15 14 13 28 28 C 1.37660 * 120.08416 * 359.95774 * 27 15 14 29 29 H 0.97002 * 120.00578 * 0.02562 * 1 2 3 30 30 H 1.07990 * 120.04668 * 359.97438 * 13 12 10 31 31 H 1.08002 * 119.95860 * 179.75245 * 14 13 12 32 32 H 1.07994 * 120.14256 * 0.23994 * 20 19 17 33 33 H 1.07999 * 119.76211 * 179.97438 * 21 20 19 34 34 H 1.07997 * 119.76093 * 180.02562 * 22 21 20 35 35 H 1.08000 * 120.14704 * 180.02562 * 23 22 21 36 36 H 1.07997 * 119.96024 * 179.97438 * 27 15 14 37 37 H 1.07996 * 120.04364 * 180.02562 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6965 -1.2124 5 1 1.2831 2.7465 0.0006 6 1 3.1018 1.6966 1.2126 7 6 2.0083 -1.2019 0.0005 8 1 3.0883 -1.2020 0.0010 9 8 1.3340 -2.3699 0.0016 10 6 2.0680 -3.5001 0.0015 11 8 3.2818 -3.4365 0.0010 12 6 1.3989 -4.8138 0.0032 13 6 0.0025 -4.8891 -0.0011 14 6 -0.6186 -6.1175 0.0053 15 6 0.1408 -7.2831 0.0048 16 7 -0.4932 -8.5276 0.0054 17 6 -1.8271 -8.7023 0.0123 18 8 -2.6579 -7.8166 0.0184 19 6 -2.1122 -10.1525 0.0082 20 6 -3.2719 -10.9109 0.0091 21 6 -3.1880 -12.2946 0.0100 22 6 -1.9563 -12.9220 0.0091 23 6 -0.7878 -12.1766 0.0068 24 6 -0.8560 -10.7925 0.0060 25 6 0.1496 -9.7094 0.0046 26 8 1.3546 -9.8608 0.0026 27 6 1.5301 -7.2123 0.0042 28 6 2.1587 -5.9876 0.0031 29 1 -0.4851 0.8400 -0.0004 30 1 -0.5877 -3.9848 -0.0052 31 1 -1.6970 -6.1766 0.0060 32 1 -4.2369 -10.4261 0.0098 33 1 -4.0914 -12.8864 0.0111 34 1 -1.9042 -14.0008 0.0094 35 1 0.1718 -12.6722 0.0058 36 1 2.1164 -8.1193 0.0042 37 1 3.2373 -5.9334 0.0022 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000003577828.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:01 Heat of formation + Delta-G solvation = -68.743291 kcal Electronic energy + Delta-G solvation = -26861.189033 eV Core-core repulsion = 22727.792867 eV Total energy + Delta-G solvation = -4133.396166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 337.083 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.98242 -41.33729 -40.18361 -40.13884 -39.11507 -37.41286 -37.10735 -34.40944 -33.76306 -32.35798 -32.11555 -30.93760 -27.82783 -26.50826 -26.20639 -24.52018 -23.94879 -22.62432 -22.11944 -21.29735 -19.96093 -19.21057 -19.15796 -18.70318 -18.14208 -17.83081 -17.30459 -16.64954 -16.64036 -16.34513 -16.09397 -15.82915 -15.72196 -15.40008 -15.20222 -15.10538 -14.80732 -14.68672 -14.42557 -14.06591 -13.72302 -13.62797 -13.28751 -13.24236 -12.67814 -12.58075 -12.49262 -12.19638 -12.18589 -12.09001 -11.64966 -11.23571 -11.17998 -10.75330 -10.33084 -10.30122 -10.23750 -9.67314 -8.60627 -6.37853 -1.14743 -0.64300 0.01388 0.11986 0.86241 0.88364 1.27952 1.32199 1.48916 1.49587 1.86393 2.05928 2.39963 2.58756 2.59793 2.62288 2.97571 2.97956 3.51994 3.60302 3.65208 3.75895 3.95541 4.05559 4.07955 4.17537 4.22026 4.41696 4.44071 4.69090 4.71050 4.84712 4.85584 4.98514 4.99842 5.13015 5.21329 5.27576 5.28450 5.48454 5.57532 5.68939 5.75254 5.87497 6.29421 6.52414 6.83021 7.65067 8.59530 Molecular weight = 337.08amu Principal moments of inertia in cm(-1) A = 0.029614 B = 0.002311 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 945.280598 B =12115.624275 C =13051.054993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C -0.003 4.003 3 Si 1.022 2.978 4 H -0.260 1.260 5 H -0.257 1.257 6 H -0.260 1.260 7 C -0.421 4.421 8 H 0.085 0.915 9 O -0.229 6.229 10 C 0.433 3.567 11 O -0.578 6.578 12 C -0.123 4.123 13 C -0.048 4.048 14 C -0.146 4.146 15 C 0.146 3.854 16 N -0.525 5.525 17 C 0.567 3.433 18 O -0.472 6.472 19 C -0.155 4.155 20 C -0.039 4.039 21 C -0.078 4.078 22 C -0.078 4.078 23 C -0.037 4.037 24 C -0.154 4.154 25 C 0.570 3.430 26 O -0.470 6.470 27 C -0.142 4.142 28 C -0.040 4.040 29 H 0.282 0.718 30 H 0.136 0.864 31 H 0.166 0.834 32 H 0.158 0.842 33 H 0.184 0.816 34 H 0.185 0.815 35 H 0.160 0.840 36 H 0.173 0.827 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.413 -31.369 0.013 33.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.204 4.204 3 Si 0.840 3.160 4 H -0.185 1.185 5 H -0.181 1.181 6 H -0.185 1.185 7 C -0.497 4.497 8 H 0.103 0.897 9 O -0.137 6.137 10 C 0.283 3.717 11 O -0.478 6.478 12 C -0.125 4.125 13 C -0.067 4.067 14 C -0.165 4.165 15 C 0.055 3.945 16 N -0.259 5.259 17 C 0.359 3.641 18 O -0.344 6.344 19 C -0.159 4.159 20 C -0.057 4.057 21 C -0.096 4.096 22 C -0.096 4.096 23 C -0.056 4.056 24 C -0.158 4.158 25 C 0.362 3.638 26 O -0.342 6.342 27 C -0.162 4.162 28 C -0.059 4.059 29 H 0.091 0.909 30 H 0.154 0.846 31 H 0.183 0.817 32 H 0.175 0.825 33 H 0.201 0.799 34 H 0.202 0.798 35 H 0.178 0.822 36 H 0.190 0.810 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.115 -30.782 0.013 32.401 hybrid contribution 0.732 1.627 0.001 1.784 sum -9.383 -29.155 0.014 30.627 Atomic orbital electron populations 1.70054 1.07714 1.29805 1.45607 1.26641 0.96972 1.02412 0.94394 0.84632 0.77606 0.73875 0.79898 1.18469 1.18106 1.18487 1.21516 0.92457 0.80907 1.54771 0.89717 1.83921 1.39865 1.13954 1.75912 1.21511 0.85864 0.86324 0.78030 1.90579 1.16180 1.88426 1.52597 1.19413 0.94470 0.90349 1.08252 1.21374 0.92915 0.98478 0.93931 1.21499 1.02343 0.89588 1.03080 1.18115 0.92374 0.83280 1.00775 1.44028 1.09655 1.06652 1.65520 1.19060 0.80256 0.90840 0.73921 1.90711 1.50117 1.49464 1.44121 1.20296 0.96595 0.90281 1.08691 1.21211 0.96799 0.94391 0.93344 1.22019 1.00499 0.92680 0.94374 1.22021 0.90420 1.02768 0.94344 1.21214 1.02042 0.89070 0.93233 1.20302 0.91595 0.95228 1.08668 1.18997 0.87986 0.82937 0.73876 1.90689 1.14478 1.84835 1.44202 1.21498 0.92083 0.99490 1.03086 1.21166 1.00972 0.89493 0.94272 0.90870 0.84610 0.81697 0.82479 0.79886 0.79801 0.82215 0.80982 0.83527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.79 13.67 21.63 0.30 -53.50 16 2 C 0.00 -0.18 5.49 84.89 0.47 0.29 16 3 Si 1.02 44.29 29.55 68.60 2.03 46.31 16 4 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 5 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 6 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.42 -26.51 9.65 67.95 0.66 -25.85 16 8 H 0.09 5.37 6.86 -2.91 -0.02 5.35 16 9 O -0.23 -14.25 8.98 10.94 0.10 -14.16 16 10 C 0.43 24.21 7.83 70.24 0.55 24.76 16 11 O -0.58 -34.25 15.59 19.71 0.31 -33.95 16 12 C -0.12 -5.56 5.88 -20.09 -0.12 -5.68 16 13 C -0.05 -1.98 9.61 22.52 0.22 -1.77 16 14 C -0.15 -5.16 9.30 22.34 0.21 -4.95 16 15 C 0.15 4.79 6.58 38.31 0.25 5.04 16 16 N -0.53 -14.43 2.83 -585.42 -1.66 -16.09 16 17 C 0.57 14.18 7.91 86.81 0.69 14.86 16 18 O -0.47 -13.90 14.88 -3.53 -0.05 -13.95 16 19 C -0.16 -2.55 6.41 -20.00 -0.13 -2.68 16 20 C -0.04 -0.32 10.09 22.44 0.23 -0.10 16 21 C -0.08 -0.10 10.04 22.36 0.22 0.12 16 22 C -0.08 -0.08 10.03 22.36 0.22 0.14 16 23 C -0.04 -0.28 10.09 22.44 0.23 -0.05 16 24 C -0.15 -2.47 6.41 -19.99 -0.13 -2.60 16 25 C 0.57 13.67 7.91 86.81 0.69 14.36 16 26 O -0.47 -12.82 14.88 -3.53 -0.05 -12.87 16 27 C -0.14 -4.72 9.30 22.34 0.21 -4.51 16 28 C -0.04 -1.54 9.58 22.52 0.22 -1.32 16 29 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 30 H 0.14 5.97 7.60 -2.92 -0.02 5.95 16 31 H 0.17 5.61 5.22 -2.91 -0.02 5.59 16 32 H 0.16 0.89 8.06 -2.91 -0.02 0.86 16 33 H 0.18 -1.10 8.06 -2.91 -0.02 -1.12 16 34 H 0.18 -1.18 8.06 -2.91 -0.02 -1.21 16 35 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 36 H 0.17 5.24 5.22 -2.91 -0.02 5.22 16 37 H 0.15 5.43 7.64 -2.91 -0.02 5.41 16 Total: -1.00 -83.46 336.86 6.80 -76.66 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.16 Total: 11.47 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: 4.67 Total: 10.07 kcal Atomic # 7 Polarization: -68.22 SS G_CDS: -1.36 Total: -69.59 kcal Atomic # 8 Polarization: -75.22 SS G_CDS: 0.30 Total: -74.92 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Total: -83.46 6.80 -76.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000003577828.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.918 kcal (2) G-P(sol) polarization free energy of solvation -83.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds