Wall clock time and date at job start Tue Mar 31 2020 20:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48496 * 109.47443 * 59.99520 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 S 1.81002 * 109.47156 * 179.97438 * 13 11 10 15 15 C 1.76193 * 100.00049 * 180.02562 * 14 13 11 16 16 N 1.31288 * 126.28418 * 359.68301 * 15 14 13 17 17 N 1.28652 * 109.44136 * 179.85969 * 16 15 14 18 18 C 1.31086 * 109.41848 * 0.41800 * 17 16 15 19 19 C 1.47718 * 126.29741 * 179.76798 * 18 17 16 20 20 C 1.39613 * 120.16631 * 359.97438 * 19 18 17 21 21 C 1.37928 * 119.87732 * 180.02562 * 20 19 18 22 22 C 1.38397 * 120.20148 * 0.02562 * 21 20 19 23 23 C 1.38295 * 120.32763 * 0.02562 * 22 21 20 24 24 C 1.38222 * 120.12054 * 359.67065 * 23 22 21 25 25 F 1.35103 * 120.10057 * 180.30307 * 24 23 22 26 26 O 1.34689 * 126.28546 * 180.02562 * 15 14 13 27 27 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 29 29 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 30 30 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 31 31 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 32 32 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 33 33 H 1.08008 * 120.05784 * 0.02562 * 20 19 18 34 34 H 1.07997 * 119.89727 * 179.97438 * 21 20 19 35 35 H 1.08000 * 119.83797 * 179.97438 * 22 21 20 36 36 H 1.07998 * 119.94105 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 16 1.8283 -7.5963 0.0032 15 6 3.1780 -8.7288 0.0062 16 7 4.4534 -8.4175 0.0021 17 7 5.1571 -9.4945 0.0092 18 6 4.3605 -10.5355 0.0090 19 6 4.7747 -11.9535 0.0110 20 6 6.1300 -12.2885 0.0129 21 6 6.5100 -13.6144 0.0142 22 6 5.5520 -14.6132 0.0132 23 6 4.2071 -14.2909 0.0103 24 6 3.8112 -12.9666 0.0153 25 9 2.4973 -12.6521 0.0187 26 8 3.0908 -10.0729 0.0067 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 3.1568 -3.4354 0.0021 31 1 3.3612 -5.9713 -0.8858 32 1 3.3585 -5.9707 0.8942 33 1 6.8795 -11.5108 0.0132 34 1 7.5583 -13.8740 0.0152 35 1 5.8561 -15.6495 0.0139 36 1 3.4648 -15.0753 0.0092 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000004986983.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:23 Heat of formation + Delta-G solvation = -11.326502 kcal Electronic energy + Delta-G solvation = -24145.458560 eV Core-core repulsion = 20058.828570 eV Total energy + Delta-G solvation = -4086.629990 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.44387 -44.24717 -39.51675 -39.00498 -36.42560 -34.40177 -33.42903 -32.50307 -31.25921 -30.59533 -29.81073 -26.94068 -25.15912 -24.54933 -22.85961 -22.74759 -22.28250 -20.14684 -19.05618 -18.35497 -17.69586 -17.41485 -17.03624 -16.80788 -16.14323 -16.11539 -15.90229 -15.36437 -15.35716 -15.16060 -14.55833 -14.36939 -14.00894 -13.74221 -13.20638 -13.07170 -12.90631 -12.70350 -12.57836 -12.23072 -12.06710 -12.06202 -11.79412 -11.56612 -11.17655 -11.02783 -10.95861 -10.76483 -10.38721 -9.63344 -9.51205 -9.43963 -9.35076 -8.84176 -8.11478 -7.92514 -6.23203 -4.30809 -0.14060 0.32089 0.53632 1.08934 1.68183 2.06489 2.30010 2.98624 3.00142 3.20635 3.28020 3.30910 3.43311 3.68528 3.78662 4.08943 4.29543 4.33348 4.48788 4.58634 4.67636 4.86313 4.91937 4.95967 5.11148 5.13552 5.18158 5.31746 5.38560 5.45186 5.57567 5.71698 6.12502 7.14545 7.18612 7.39515 7.54865 7.85181 7.87065 8.38188 8.60767 8.85378 9.35789 10.86880 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.037115 B = 0.001790 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.231369 B =15638.324389 C =16372.101386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.249 3.751 10 N -0.698 5.698 11 C 0.519 3.481 12 O -0.542 6.542 13 C -0.162 4.162 14 S 0.158 5.842 15 C 0.130 3.870 16 N -0.291 5.291 17 N -0.255 5.255 18 C 0.193 3.807 19 C -0.052 4.052 20 C -0.042 4.042 21 C -0.130 4.130 22 C -0.068 4.068 23 C -0.155 4.155 24 C 0.131 3.869 25 F -0.122 7.122 26 O -0.192 6.192 27 H 0.266 0.734 28 H 0.031 0.969 29 H 0.031 0.969 30 H 0.396 0.604 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.150 0.850 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.945 -30.101 0.031 32.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.585 4.585 8 H 0.083 0.917 9 C 0.128 3.872 10 N -0.346 5.346 11 C 0.300 3.700 12 O -0.422 6.422 13 C -0.314 4.314 14 S 0.388 5.612 15 C -0.185 4.185 16 N -0.144 5.144 17 N -0.103 5.103 18 C -0.019 4.019 19 C -0.055 4.055 20 C -0.061 4.061 21 C -0.148 4.148 22 C -0.087 4.087 23 C -0.174 4.174 24 C 0.110 3.890 25 F -0.100 7.100 26 O -0.073 6.073 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.049 0.951 30 H 0.229 0.771 31 H 0.145 0.855 32 H 0.145 0.855 33 H 0.168 0.832 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 11.729 -29.466 0.027 31.714 hybrid contribution 0.944 0.649 0.004 1.145 sum 12.672 -28.817 0.030 31.480 Atomic orbital electron populations 1.69975 1.06123 1.27371 1.48651 1.24950 0.94934 0.99525 0.94541 0.86333 0.79834 0.82787 0.77803 1.19581 1.20742 1.20748 1.21239 0.93405 0.90240 1.53572 0.91651 1.19243 0.88173 0.81562 0.98186 1.46392 1.11753 1.05292 1.71133 1.19323 0.88220 0.83831 0.78598 1.90731 1.16018 1.84196 1.51225 1.24055 1.03350 0.94264 1.09712 1.86938 0.93805 0.91077 1.89421 1.30771 1.01409 0.84167 1.02196 1.74953 0.98886 1.20454 1.20126 1.74394 1.26650 0.93698 1.15547 1.25093 0.77589 0.96285 1.02976 1.17294 0.94152 0.83836 1.10238 1.21172 0.92890 0.97760 0.94291 1.21214 1.00772 0.91667 1.01166 1.21299 0.91628 1.00539 0.95227 1.21151 0.97978 0.94044 1.04180 1.17783 0.77755 0.93063 1.00394 1.91597 1.31666 1.93626 1.93148 1.85098 1.31310 1.20406 1.70493 0.92383 0.95066 0.95071 0.77099 0.85474 0.85482 0.83194 0.83977 0.84099 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.51 13.29 55.43 0.74 -24.77 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.91 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.55 -14.40 9.28 -34.44 -0.32 -14.72 16 8 H 0.07 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.33 5.43 -5.19 -0.03 6.30 16 10 N -0.70 -13.83 5.55 -61.47 -0.34 -14.17 16 11 C 0.52 9.67 7.85 -10.98 -0.09 9.58 16 12 O -0.54 -12.19 15.86 5.56 0.09 -12.10 16 13 C -0.16 -2.24 5.71 36.01 0.21 -2.04 16 14 S 0.16 2.25 21.45 -107.50 -2.31 -0.05 16 15 C 0.13 1.88 8.53 52.53 0.45 2.33 16 16 N -0.29 -4.38 11.62 30.32 0.35 -4.03 16 17 N -0.25 -3.64 11.89 32.08 0.38 -3.26 16 18 C 0.19 2.52 7.96 -14.00 -0.11 2.41 16 19 C -0.05 -0.51 5.88 -104.93 -0.62 -1.13 16 20 C -0.04 -0.29 9.70 -39.18 -0.38 -0.67 16 21 C -0.13 -0.56 10.03 -39.64 -0.40 -0.95 16 22 C -0.07 -0.26 10.04 -39.50 -0.40 -0.66 16 23 C -0.15 -0.87 10.01 -39.57 -0.40 -1.27 16 24 C 0.13 1.18 7.29 -39.00 -0.28 0.90 16 25 F -0.12 -1.35 15.90 2.25 0.04 -1.32 16 26 O -0.19 -2.77 9.71 2.28 0.02 -2.75 16 27 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 28 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.03 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.40 6.63 8.32 -40.82 -0.34 6.29 16 31 H 0.13 1.54 8.14 -51.92 -0.42 1.12 16 32 H 0.13 1.54 8.14 -51.91 -0.42 1.12 16 33 H 0.15 0.96 7.86 -52.48 -0.41 0.55 16 34 H 0.14 0.23 8.06 -52.49 -0.42 -0.19 16 35 H 0.14 0.13 8.06 -52.49 -0.42 -0.30 16 36 H 0.15 0.53 8.06 -52.49 -0.42 0.10 16 LS Contribution 348.10 15.07 5.25 5.25 Total: -1.00 -33.26 348.10 -6.51 -39.77 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -3.25 Total: 0.22 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -2.46 Total: 1.74 kcal Atomic # 7 Polarization: -47.37 SS G_CDS: 1.13 Total: -46.24 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: 0.11 Total: -14.85 kcal Atomic # 9 Polarization: -1.35 SS G_CDS: 0.04 Total: -1.32 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: 2.25 SS G_CDS: -2.31 Total: -0.05 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.26 -6.51 -39.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004986983.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.443 kcal (2) G-P(sol) polarization free energy of solvation -33.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds