Wall clock time and date at job start Tue Mar 31 2020 20:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48496 * 109.47443 * 59.99520 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 S 1.81002 * 109.47156 * 179.97438 * 13 11 10 15 15 C 1.76193 * 100.00049 * 180.02562 * 14 13 11 16 16 N 1.31288 * 126.28418 * 359.68301 * 15 14 13 17 17 N 1.28652 * 109.44136 * 179.85969 * 16 15 14 18 18 C 1.31086 * 109.41848 * 0.41800 * 17 16 15 19 19 C 1.47718 * 126.29741 * 179.76798 * 18 17 16 20 20 C 1.39613 * 120.16631 * 359.97438 * 19 18 17 21 21 C 1.37928 * 119.87732 * 180.02562 * 20 19 18 22 22 C 1.38397 * 120.20148 * 0.02562 * 21 20 19 23 23 C 1.38295 * 120.32763 * 0.02562 * 22 21 20 24 24 C 1.38222 * 120.12054 * 359.67065 * 23 22 21 25 25 F 1.35103 * 120.10057 * 180.30307 * 24 23 22 26 26 O 1.34689 * 126.28546 * 180.02562 * 15 14 13 27 27 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 29 29 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 30 30 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 31 31 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 32 32 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 33 33 H 1.08008 * 120.05784 * 0.02562 * 20 19 18 34 34 H 1.07997 * 119.89727 * 179.97438 * 21 20 19 35 35 H 1.08000 * 119.83797 * 179.97438 * 22 21 20 36 36 H 1.07998 * 119.94105 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 16 1.8283 -7.5963 0.0032 15 6 3.1780 -8.7288 0.0062 16 7 4.4534 -8.4175 0.0021 17 7 5.1571 -9.4945 0.0092 18 6 4.3605 -10.5355 0.0090 19 6 4.7747 -11.9535 0.0110 20 6 6.1300 -12.2885 0.0129 21 6 6.5100 -13.6144 0.0142 22 6 5.5520 -14.6132 0.0132 23 6 4.2071 -14.2909 0.0103 24 6 3.8112 -12.9666 0.0153 25 9 2.4973 -12.6521 0.0187 26 8 3.0908 -10.0729 0.0067 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6241 -2.5567 0.8903 30 1 3.1568 -3.4354 0.0021 31 1 3.3612 -5.9713 -0.8858 32 1 3.3585 -5.9707 0.8942 33 1 6.8795 -11.5108 0.0132 34 1 7.5583 -13.8740 0.0152 35 1 5.8561 -15.6495 0.0139 36 1 3.4648 -15.0753 0.0092 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000004986983.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:29:23 Heat of formation + Delta-G solvation = -37.564755 kcal Electronic energy + Delta-G solvation = -24146.596336 eV Core-core repulsion = 20058.828570 eV Total energy + Delta-G solvation = -4087.767766 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.15189 -45.30183 -40.65195 -40.00014 -37.50039 -36.26881 -34.46198 -34.15557 -31.87088 -31.70907 -30.83242 -28.82395 -26.00468 -25.47525 -24.68638 -23.46322 -23.04595 -21.77475 -20.19945 -19.17763 -18.75962 -18.72990 -18.02916 -17.67423 -17.46940 -17.16525 -16.93284 -16.86377 -16.78257 -16.11600 -15.63974 -15.37186 -14.99998 -14.71289 -14.58918 -14.33318 -14.04575 -13.85529 -13.72755 -13.53934 -13.32180 -12.99665 -12.93447 -12.85307 -12.76236 -12.25996 -12.23003 -12.06361 -11.86474 -11.47484 -11.15075 -10.84069 -10.23295 -9.97518 -9.90888 -9.01692 -8.30323 -6.46432 -0.88465 -0.80215 0.07189 0.22276 0.54178 1.10671 1.35737 1.44163 1.44364 1.47043 1.58096 2.22111 2.43760 2.50342 2.70498 3.00140 3.05367 3.51084 3.58085 3.69018 3.77015 3.85771 3.94539 4.05346 4.17168 4.21421 4.28904 4.67761 4.92335 4.97519 5.06944 5.19416 5.21966 5.30882 5.39146 5.59637 5.71727 5.81593 6.61474 6.68741 6.79016 7.16643 7.31077 8.81776 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.037115 B = 0.001790 C = 0.001710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.231369 B =15638.324389 C =16372.101386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.983 3.017 4 H -0.254 1.254 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.557 4.557 8 H 0.085 0.915 9 C 0.265 3.735 10 N -0.693 5.693 11 C 0.521 3.479 12 O -0.583 6.583 13 C -0.146 4.146 14 S 0.149 5.851 15 C 0.123 3.877 16 N -0.300 5.300 17 N -0.278 5.278 18 C 0.204 3.796 19 C -0.088 4.088 20 C -0.045 4.045 21 C -0.118 4.118 22 C -0.048 4.048 23 C -0.152 4.152 24 C 0.106 3.894 25 F -0.143 7.143 26 O -0.205 6.205 27 H 0.269 0.731 28 H -0.004 1.004 29 H -0.004 1.004 30 H 0.414 0.586 31 H 0.151 0.849 32 H 0.151 0.849 33 H 0.151 0.849 34 H 0.178 0.822 35 H 0.183 0.817 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.340 -32.278 0.034 36.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.194 4.194 3 Si 0.807 3.193 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.595 4.595 8 H 0.103 0.897 9 C 0.142 3.858 10 N -0.342 5.342 11 C 0.306 3.694 12 O -0.465 6.465 13 C -0.297 4.297 14 S 0.377 5.623 15 C -0.193 4.193 16 N -0.152 5.152 17 N -0.125 5.125 18 C -0.008 4.008 19 C -0.091 4.091 20 C -0.064 4.064 21 C -0.136 4.136 22 C -0.067 4.067 23 C -0.170 4.170 24 C 0.085 3.915 25 F -0.122 7.122 26 O -0.086 6.086 27 H 0.078 0.922 28 H 0.014 0.986 29 H 0.014 0.986 30 H 0.250 0.750 31 H 0.169 0.831 32 H 0.169 0.831 33 H 0.169 0.831 34 H 0.195 0.805 35 H 0.200 0.800 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 15.192 -31.675 0.029 35.129 hybrid contribution -0.052 1.044 0.003 1.045 sum 15.140 -30.631 0.032 34.168 Atomic orbital electron populations 1.70126 1.08173 1.28536 1.49910 1.26016 0.95755 1.03775 0.93882 0.85131 0.79105 0.77485 0.77622 1.17716 1.20537 1.20548 1.21647 0.94438 0.90464 1.52918 0.89656 1.18680 0.88558 0.83704 0.94867 1.46057 1.11844 1.04723 1.71603 1.19948 0.88412 0.84349 0.76738 1.90716 1.18334 1.84903 1.52561 1.23856 1.01890 0.91872 1.12065 1.87023 0.93958 0.91311 1.89969 1.30620 1.01161 0.84307 1.03217 1.74861 0.99032 1.21134 1.20185 1.74345 1.26751 0.93850 1.17595 1.25865 0.76826 0.97564 1.00497 1.17593 0.95687 0.82238 1.13538 1.21371 0.91548 0.99379 0.94139 1.21665 1.02757 0.90266 0.98896 1.21840 0.90394 1.02476 0.91942 1.21510 0.99635 0.92846 1.03029 1.18189 0.76825 0.94411 1.02095 1.91538 1.33136 1.93945 1.93566 1.85102 1.32258 1.20431 1.70791 0.92224 0.98637 0.98643 0.74984 0.83066 0.83072 0.83144 0.80469 0.79963 0.81569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.06 13.29 21.45 0.28 -54.77 16 2 C 0.01 0.31 5.46 84.66 0.46 0.77 16 3 Si 0.98 41.79 29.54 68.60 2.03 43.82 16 4 H -0.25 -9.98 7.11 99.48 0.71 -9.27 16 5 H -0.28 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 7 C -0.56 -29.47 9.28 25.60 0.24 -29.24 16 8 H 0.09 4.08 7.60 -2.91 -0.02 4.05 16 9 C 0.26 13.97 5.43 85.63 0.46 14.44 16 10 N -0.69 -27.68 5.55 -466.78 -2.59 -30.27 16 11 C 0.52 19.67 7.85 87.66 0.69 20.36 16 12 O -0.58 -27.21 15.86 -3.03 -0.05 -27.26 16 13 C -0.15 -3.93 5.71 71.24 0.41 -3.52 16 14 S 0.15 4.29 21.45 -56.49 -1.21 3.08 16 15 C 0.12 3.62 8.53 130.32 1.11 4.73 16 16 N -0.30 -9.00 11.62 -171.87 -2.00 -11.00 16 17 N -0.28 -8.02 11.89 -166.17 -1.98 -9.99 16 18 C 0.20 5.45 7.96 87.31 0.70 6.14 16 19 C -0.09 -1.69 5.88 -20.06 -0.12 -1.81 16 20 C -0.04 -0.55 9.70 22.53 0.22 -0.33 16 21 C -0.12 -0.54 10.03 22.23 0.22 -0.32 16 22 C -0.05 -0.15 10.04 22.32 0.22 0.07 16 23 C -0.15 -1.31 10.01 22.28 0.22 -1.09 16 24 C 0.11 1.85 7.29 22.64 0.16 2.01 16 25 F -0.14 -3.28 15.90 44.97 0.71 -2.57 16 26 O -0.20 -6.08 9.71 -14.77 -0.14 -6.23 16 27 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 28 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 29 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.41 13.44 8.32 -92.71 -0.77 12.66 16 31 H 0.15 3.42 8.14 -2.39 -0.02 3.40 16 32 H 0.15 3.42 8.14 -2.40 -0.02 3.40 16 33 H 0.15 1.75 7.86 -2.91 -0.02 1.73 16 34 H 0.18 -0.38 8.06 -2.91 -0.02 -0.41 16 35 H 0.18 -0.85 8.06 -2.91 -0.02 -0.87 16 36 H 0.17 0.69 8.06 -2.91 -0.02 0.67 16 Total: -1.00 -76.56 348.10 0.45 -76.11 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: 0.39 Total: 6.87 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 5.00 Total: 12.21 kcal Atomic # 7 Polarization: -99.75 SS G_CDS: -6.28 Total: -106.03 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.19 Total: -33.49 kcal Atomic # 9 Polarization: -3.28 SS G_CDS: 0.71 Total: -2.57 kcal Atomic # 14 Polarization: 41.79 SS G_CDS: 2.03 Total: 43.82 kcal Atomic # 16 Polarization: 4.29 SS G_CDS: -1.21 Total: 3.08 kcal Total: -76.56 0.45 -76.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000004986983.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.549 kcal (2) G-P(sol) polarization free energy of solvation -76.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds