Wall clock time and date at job start Tue Mar 31 2020 20:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.75355 * 124.30833 * 2 1 4 4 C 1.75749 * 92.18107 * 180.02562 * 3 2 1 5 5 N 1.33953 * 131.27208 * 180.02562 * 4 3 2 6 6 C 1.31273 * 121.05876 * 180.02562 * 5 4 3 7 7 N 1.32084 * 122.18780 * 0.02562 * 6 5 4 8 8 C 1.32530 * 121.18008 * 0.02562 * 7 6 5 9 9 S 1.76206 * 120.53888 * 179.97438 * 8 7 6 10 10 C 1.81003 * 99.99630 * 359.97438 * 9 8 7 11 11 C 1.50707 * 109.46801 * 180.02562 * 10 9 8 12 12 O 1.21277 * 119.99880 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99735 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99908 * 180.02562 * 13 11 10 15 15 C 1.50694 * 109.47339 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99930 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00167 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99964 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00284 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47274 * 89.99163 * 19 17 15 21 21 H 1.48494 * 109.47403 * 209.99829 * 19 17 15 22 22 H 1.48504 * 109.46860 * 329.99690 * 19 17 15 23 23 C 1.39705 * 109.61873 * 0.02562 * 4 3 2 24 24 C 1.31905 * 124.31274 * 180.02562 * 2 1 3 25 25 C 1.50703 * 122.59540 * 359.95596 * 24 2 1 26 26 H 1.08995 * 109.47053 * 269.96854 * 1 2 3 27 27 H 1.08994 * 109.47310 * 29.97466 * 1 2 3 28 28 H 1.09002 * 109.46931 * 149.97455 * 1 2 3 29 29 H 1.08003 * 118.91022 * 180.02562 * 6 5 4 30 30 H 1.08991 * 109.47290 * 299.99592 * 10 9 8 31 31 H 1.08996 * 109.47436 * 60.00381 * 10 9 8 32 32 H 0.97003 * 120.00379 * 359.97438 * 13 11 10 33 33 H 1.09007 * 109.46749 * 299.99721 * 14 13 11 34 34 H 1.09000 * 109.47369 * 59.99392 * 14 13 11 35 35 H 0.97001 * 120.00156 * 179.97438 * 18 17 15 36 36 H 1.09001 * 109.46913 * 270.02368 * 25 24 2 37 37 H 1.08996 * 109.46946 * 30.02334 * 25 24 2 38 38 H 1.08996 * 109.46881 * 150.02454 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4954 1.4485 0.0000 4 6 3.9838 0.5138 -0.0008 5 7 5.2675 0.8965 -0.0007 6 6 6.2378 0.0124 -0.0019 7 7 6.0049 -1.2878 -0.0037 8 6 4.7679 -1.7633 -0.0049 9 16 4.4767 -3.5012 -0.0080 10 6 6.1828 -4.1056 -0.0093 11 6 6.1818 -5.6127 -0.0127 12 8 5.1311 -6.2183 -0.0136 13 7 7.3485 -6.2873 -0.0136 14 6 7.3475 -7.7523 -0.0174 15 6 8.7679 -8.2556 -0.0184 16 1 9.5893 -7.5543 -0.0168 17 6 9.0190 -9.6113 -0.0224 18 7 8.0188 -10.4653 -0.0249 19 14 10.7797 -10.2353 -0.0243 20 1 11.2464 -10.4046 1.3753 21 1 10.8413 -11.5414 -0.7281 22 1 11.6512 -9.2557 -0.7216 23 6 3.6812 -0.8501 -0.0016 24 6 2.2506 -1.0895 -0.0005 25 6 1.6595 -2.4758 -0.0001 26 1 -0.3633 -0.0006 1.0276 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 7.2605 0.3595 -0.0014 30 1 6.6968 -3.7411 -0.8987 31 1 6.6970 -3.7443 0.8812 32 1 8.1889 -5.8029 -0.0125 33 1 6.8328 -8.1176 0.8713 34 1 6.8340 -8.1130 -0.9087 35 1 8.1953 -11.4191 -0.0281 36 1 1.5173 -2.8098 1.0276 37 1 0.6982 -2.4610 -0.5137 38 1 2.3356 -3.1591 -0.5140 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000006113059.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:22 Heat of formation + Delta-G solvation = 16.345880 kcal Electronic energy + Delta-G solvation = -22786.477833 eV Core-core repulsion = 19267.260983 eV Total energy + Delta-G solvation = -3519.216849 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.16142 -38.88897 -37.62008 -34.33569 -33.96718 -32.45498 -32.22608 -30.20178 -29.54836 -27.38207 -26.87431 -24.85645 -23.80905 -22.62756 -20.12448 -19.90205 -19.07731 -17.97054 -17.24663 -16.87743 -16.13696 -15.81739 -15.76774 -15.16319 -15.14140 -14.93908 -14.34508 -14.25419 -13.95156 -13.57156 -13.28618 -13.09394 -13.02618 -12.99918 -12.56641 -12.31135 -12.06892 -12.02318 -11.69107 -11.41883 -11.28743 -11.21736 -11.03911 -10.92738 -10.46584 -10.33662 -9.52962 -9.45799 -9.38817 -9.33895 -8.81303 -8.57814 -8.04300 -7.77240 -6.21929 -4.29342 0.05868 0.49757 0.76255 1.08271 1.52989 1.75595 1.93288 3.11990 3.21460 3.27785 3.30031 3.32155 3.86837 3.93497 3.94493 4.15765 4.31365 4.45483 4.60820 4.85571 4.97112 5.08403 5.13582 5.15891 5.18057 5.25550 5.35728 5.45847 5.48494 5.56922 5.79756 5.85530 6.09100 6.43571 7.18773 7.26120 7.42541 7.57289 7.65914 7.89430 8.45232 8.65999 8.91196 9.37117 10.88181 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.026601 B = 0.002211 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.341598 B =12658.103906 C =13679.393014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.177 4.177 3 S 0.160 5.840 4 C 0.101 3.899 5 N -0.505 5.505 6 C 0.327 3.673 7 N -0.532 5.532 8 C 0.194 3.806 9 S 0.079 5.921 10 C -0.163 4.163 11 C 0.514 3.486 12 O -0.544 6.544 13 N -0.702 5.702 14 C 0.250 3.750 15 C -0.545 4.545 16 H 0.064 0.936 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.905 3.095 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.272 1.272 23 C -0.161 4.161 24 C -0.065 4.065 25 C -0.106 4.106 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.206 0.794 30 H 0.120 0.880 31 H 0.120 0.880 32 H 0.394 0.606 33 H 0.030 0.970 34 H 0.030 0.970 35 H 0.267 0.733 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.404 24.042 0.083 27.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.294 4.294 3 S 0.421 5.579 4 C -0.151 4.151 5 N -0.223 5.223 6 C 0.032 3.968 7 N -0.253 5.253 8 C -0.071 4.071 9 S 0.320 5.680 10 C -0.314 4.314 11 C 0.296 3.704 12 O -0.424 6.424 13 N -0.350 5.350 14 C 0.129 3.871 15 C -0.584 4.584 16 H 0.082 0.918 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.732 3.268 20 H -0.204 1.204 21 H -0.210 1.210 22 H -0.197 1.197 23 C -0.181 4.181 24 C -0.077 4.077 25 C -0.165 4.165 26 H 0.099 0.901 27 H 0.090 0.910 28 H 0.103 0.897 29 H 0.222 0.778 30 H 0.138 0.862 31 H 0.138 0.862 32 H 0.227 0.773 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.595 24.535 0.077 28.050 hybrid contribution 2.471 -1.030 0.007 2.677 sum -11.124 23.505 0.084 26.004 Atomic orbital electron populations 1.20429 0.86724 1.03685 1.03322 1.23806 1.00523 0.95239 1.09818 1.84158 0.90533 1.05874 1.77353 1.23731 0.97649 0.94012 0.99742 1.68077 0.97744 1.39173 1.17329 1.24927 0.98747 0.83843 0.89247 1.68767 1.19947 1.17593 1.18981 1.24212 0.90029 1.01259 0.91562 1.86653 1.07001 0.87680 1.86707 1.24021 1.00228 0.98308 1.08829 1.19571 0.85371 0.87167 0.78256 1.90702 1.30984 1.69558 1.51144 1.46395 1.06569 1.10512 1.71530 1.19189 0.97680 0.72204 0.98004 1.21203 0.91403 0.92237 1.53523 0.91792 1.24951 0.97879 0.96556 0.94596 1.69968 1.30956 1.02584 1.48673 0.86395 0.83791 0.78352 0.78266 1.20412 1.20960 1.19717 1.20029 0.94288 0.93824 1.09919 1.19312 0.89469 0.97160 1.01764 1.20804 1.01138 0.90863 1.03706 0.90128 0.90958 0.89726 0.77812 0.86217 0.86199 0.77301 0.95249 0.95250 0.92362 0.89776 0.90199 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 9.98 36.01 0.36 -0.09 16 2 C -0.18 -1.55 6.38 -36.21 -0.23 -1.78 16 3 S 0.16 1.52 23.20 -107.50 -2.49 -0.98 16 4 C 0.10 1.26 7.69 -16.08 -0.12 1.13 16 5 N -0.50 -6.37 10.47 -13.32 -0.14 -6.51 16 6 C 0.33 3.70 12.27 -92.35 -1.13 2.57 16 7 N -0.53 -6.80 9.27 -12.93 -0.12 -6.92 16 8 C 0.19 2.58 7.07 -15.83 -0.11 2.47 16 9 S 0.08 1.09 17.63 -107.50 -1.90 -0.80 16 10 C -0.16 -2.33 5.36 36.01 0.19 -2.13 16 11 C 0.51 9.83 7.85 -10.98 -0.09 9.74 16 12 O -0.54 -12.42 15.86 5.56 0.09 -12.33 16 13 N -0.70 -14.23 5.55 -61.47 -0.34 -14.58 16 14 C 0.25 6.44 5.43 -5.20 -0.03 6.41 16 15 C -0.55 -14.48 9.28 -34.44 -0.32 -14.80 16 16 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 18 N -0.88 -25.64 13.29 55.43 0.74 -24.90 16 19 Si 0.90 20.56 29.54 -169.99 -5.02 15.53 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 23 C -0.16 -2.03 6.03 -105.23 -0.63 -2.67 16 24 C -0.07 -0.68 5.96 -103.83 -0.62 -1.30 16 25 C -0.11 -0.96 9.06 36.01 0.33 -0.63 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.38 6.51 -51.93 -0.34 0.04 16 29 H 0.21 1.51 8.06 -52.48 -0.42 1.09 16 30 H 0.12 1.54 8.14 -51.92 -0.42 1.12 16 31 H 0.12 1.54 8.14 -51.92 -0.42 1.12 16 32 H 0.39 6.80 8.32 -40.82 -0.34 6.46 16 33 H 0.03 0.84 8.14 -51.92 -0.42 0.41 16 34 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.54 6.49 -51.93 -0.34 0.20 16 38 H 0.08 0.87 5.13 -38.68 -0.20 0.67 16 LS Contribution 351.33 15.07 5.29 5.29 Total: -1.00 -32.86 351.33 -10.53 -43.38 By element: Atomic # 1 Polarization: 6.35 SS G_CDS: -4.13 Total: 2.23 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -2.51 Total: 0.58 kcal Atomic # 7 Polarization: -53.04 SS G_CDS: 0.14 Total: -52.90 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.09 Total: -12.33 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -4.39 Total: -1.78 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.86 -10.53 -43.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006113059.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.726 kcal (2) G-P(sol) polarization free energy of solvation -32.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds