Wall clock time and date at job start Tue Mar 31 2020 20:38:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 S 1.75355 * 124.30833 * 2 1 4 4 C 1.75749 * 92.18107 * 180.02562 * 3 2 1 5 5 N 1.33953 * 131.27208 * 180.02562 * 4 3 2 6 6 C 1.31273 * 121.05876 * 180.02562 * 5 4 3 7 7 N 1.32084 * 122.18780 * 0.02562 * 6 5 4 8 8 C 1.32530 * 121.18008 * 0.02562 * 7 6 5 9 9 S 1.76206 * 120.53888 * 179.97438 * 8 7 6 10 10 C 1.81003 * 99.99630 * 359.97438 * 9 8 7 11 11 C 1.50707 * 109.46801 * 180.02562 * 10 9 8 12 12 O 1.21277 * 119.99880 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99735 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99908 * 180.02562 * 13 11 10 15 15 C 1.50694 * 109.47339 * 179.97438 * 14 13 11 16 16 H 1.08002 * 119.99930 * 359.97438 * 15 14 13 17 17 C 1.37877 * 120.00167 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99964 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00284 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47274 * 89.99163 * 19 17 15 21 21 H 1.48494 * 109.47403 * 209.99829 * 19 17 15 22 22 H 1.48504 * 109.46860 * 329.99690 * 19 17 15 23 23 C 1.39705 * 109.61873 * 0.02562 * 4 3 2 24 24 C 1.31905 * 124.31274 * 180.02562 * 2 1 3 25 25 C 1.50703 * 122.59540 * 359.95596 * 24 2 1 26 26 H 1.08995 * 109.47053 * 269.96854 * 1 2 3 27 27 H 1.08994 * 109.47310 * 29.97466 * 1 2 3 28 28 H 1.09002 * 109.46931 * 149.97455 * 1 2 3 29 29 H 1.08003 * 118.91022 * 180.02562 * 6 5 4 30 30 H 1.08991 * 109.47290 * 299.99592 * 10 9 8 31 31 H 1.08996 * 109.47436 * 60.00381 * 10 9 8 32 32 H 0.97003 * 120.00379 * 359.97438 * 13 11 10 33 33 H 1.09007 * 109.46749 * 299.99721 * 14 13 11 34 34 H 1.09000 * 109.47369 * 59.99392 * 14 13 11 35 35 H 0.97001 * 120.00156 * 179.97438 * 18 17 15 36 36 H 1.09001 * 109.46913 * 270.02368 * 25 24 2 37 37 H 1.08996 * 109.46946 * 30.02334 * 25 24 2 38 38 H 1.08996 * 109.46881 * 150.02454 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4954 1.4485 0.0000 4 6 3.9838 0.5138 -0.0008 5 7 5.2675 0.8965 -0.0007 6 6 6.2378 0.0124 -0.0019 7 7 6.0049 -1.2878 -0.0037 8 6 4.7679 -1.7633 -0.0049 9 16 4.4767 -3.5012 -0.0080 10 6 6.1828 -4.1056 -0.0093 11 6 6.1818 -5.6127 -0.0127 12 8 5.1311 -6.2183 -0.0136 13 7 7.3485 -6.2873 -0.0136 14 6 7.3475 -7.7523 -0.0174 15 6 8.7679 -8.2556 -0.0184 16 1 9.5893 -7.5543 -0.0168 17 6 9.0190 -9.6113 -0.0224 18 7 8.0188 -10.4653 -0.0249 19 14 10.7797 -10.2353 -0.0243 20 1 11.2464 -10.4046 1.3753 21 1 10.8413 -11.5414 -0.7281 22 1 11.6512 -9.2557 -0.7216 23 6 3.6812 -0.8501 -0.0016 24 6 2.2506 -1.0895 -0.0005 25 6 1.6595 -2.4758 -0.0001 26 1 -0.3633 -0.0006 1.0276 27 1 -0.3633 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 7.2605 0.3595 -0.0014 30 1 6.6968 -3.7411 -0.8987 31 1 6.6970 -3.7443 0.8812 32 1 8.1889 -5.8029 -0.0125 33 1 6.8328 -8.1176 0.8713 34 1 6.8340 -8.1130 -0.9087 35 1 8.1953 -11.4191 -0.0281 36 1 1.5173 -2.8098 1.0276 37 1 0.6982 -2.4610 -0.5137 38 1 2.3356 -3.1591 -0.5140 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006113059.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:21 Heat of formation + Delta-G solvation = -4.707294 kcal Electronic energy + Delta-G solvation = -22787.390767 eV Core-core repulsion = 19267.260983 eV Total energy + Delta-G solvation = -3520.129783 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.03171 -40.55648 -38.37275 -36.22708 -34.88604 -34.41319 -32.95565 -31.59060 -30.30133 -28.78615 -28.10471 -25.72297 -24.88586 -24.36042 -21.69956 -20.75063 -20.06012 -18.91881 -18.82678 -17.80741 -17.58686 -17.31307 -16.85368 -16.73876 -16.43948 -15.91558 -15.78762 -15.00539 -14.87515 -14.64351 -14.60351 -14.38229 -14.04563 -13.83931 -13.70082 -13.54051 -13.50236 -12.92766 -12.92473 -12.85421 -12.71742 -12.30297 -12.24342 -12.13775 -11.90869 -11.51740 -11.39902 -11.04642 -10.82238 -10.42034 -10.19310 -9.93067 -9.39575 -8.74004 -8.30162 -6.46474 -0.78428 -0.44082 -0.07256 0.09385 0.74807 0.84353 0.99845 1.43623 1.45334 1.55548 1.56638 2.28830 2.42621 2.49468 3.05084 3.09655 3.11370 3.32471 3.59376 3.78330 3.89865 4.01424 4.20614 4.31454 4.34259 4.59673 4.66691 4.74590 4.82483 5.00512 5.07460 5.08002 5.21449 5.22134 5.42008 5.42267 5.53894 5.61545 5.82178 6.62541 6.74006 6.76660 7.19374 7.34287 8.81841 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.026601 B = 0.002211 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.341598 B =12658.103906 C =13679.393014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.161 4.161 3 S 0.189 5.811 4 C 0.072 3.928 5 N -0.515 5.515 6 C 0.319 3.681 7 N -0.540 5.540 8 C 0.184 3.816 9 S 0.065 5.935 10 C -0.149 4.149 11 C 0.514 3.486 12 O -0.584 6.584 13 N -0.698 5.698 14 C 0.266 3.734 15 C -0.557 4.557 16 H 0.084 0.916 17 C 0.005 3.995 18 N -0.929 5.929 19 Si 0.983 3.017 20 H -0.271 1.271 21 H -0.284 1.284 22 H -0.256 1.256 23 C -0.172 4.172 24 C -0.091 4.091 25 C -0.103 4.103 26 H 0.095 0.905 27 H 0.087 0.913 28 H 0.097 0.903 29 H 0.239 0.761 30 H 0.139 0.861 31 H 0.139 0.861 32 H 0.411 0.589 33 H -0.007 1.007 34 H -0.007 1.007 35 H 0.269 0.731 36 H 0.086 0.914 37 H 0.104 0.896 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.935 26.163 0.081 28.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.278 4.278 3 S 0.450 5.550 4 C -0.180 4.180 5 N -0.234 5.234 6 C 0.025 3.975 7 N -0.261 5.261 8 C -0.081 4.081 9 S 0.305 5.695 10 C -0.299 4.299 11 C 0.300 3.700 12 O -0.466 6.466 13 N -0.348 5.348 14 C 0.144 3.856 15 C -0.595 4.595 16 H 0.102 0.898 17 C -0.195 4.195 18 N -0.568 5.568 19 Si 0.807 3.193 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.180 1.180 23 C -0.192 4.192 24 C -0.102 4.102 25 C -0.162 4.162 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.255 0.745 30 H 0.157 0.843 31 H 0.157 0.843 32 H 0.248 0.752 33 H 0.011 0.989 34 H 0.011 0.989 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.107 26.720 0.075 29.762 hybrid contribution 2.159 -1.537 0.011 2.650 sum -10.949 25.183 0.086 27.460 Atomic orbital electron populations 1.20635 0.84082 1.05085 1.04666 1.24292 1.02113 0.94361 1.07050 1.84045 0.88923 1.05637 1.76381 1.24214 0.98547 0.94809 1.00394 1.68142 0.98117 1.39629 1.17524 1.25608 0.99989 0.83296 0.88574 1.68758 1.19742 1.18396 1.19163 1.24128 0.90771 1.00636 0.92542 1.86805 1.06209 0.88801 1.87660 1.23825 1.01584 0.93893 1.10600 1.20287 0.84115 0.89231 0.76409 1.90683 1.32383 1.71100 1.52424 1.46098 1.08116 1.08510 1.72029 1.18623 0.97063 0.75374 0.94569 1.21605 0.91908 0.92956 1.52998 0.89783 1.26034 1.02727 0.96864 0.93874 1.70125 1.33752 1.03031 1.49856 0.85175 0.77875 0.77716 0.78576 1.19637 1.20978 1.17999 1.20317 0.95278 0.93871 1.09751 1.19449 0.88756 0.98269 1.03764 1.20810 1.01699 0.89767 1.03943 0.88640 0.89415 0.88447 0.74524 0.84325 0.84310 0.75249 0.98938 0.98932 0.92207 0.89577 0.87779 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.66 9.98 71.24 0.71 0.05 16 2 C -0.16 -2.48 6.38 24.84 0.16 -2.33 16 3 S 0.19 3.25 23.20 -56.49 -1.31 1.94 16 4 C 0.07 1.74 7.69 84.72 0.65 2.39 16 5 N -0.52 -12.47 10.47 -196.06 -2.05 -14.53 16 6 C 0.32 6.82 12.27 180.95 2.22 9.04 16 7 N -0.54 -13.23 9.27 -194.82 -1.81 -15.03 16 8 C 0.18 4.81 7.07 85.51 0.60 5.42 16 9 S 0.07 1.81 17.63 -56.49 -1.00 0.82 16 10 C -0.15 -4.16 5.36 71.24 0.38 -3.78 16 11 C 0.51 20.00 7.85 87.66 0.69 20.69 16 12 O -0.58 -27.70 15.86 -3.02 -0.05 -27.74 16 13 N -0.70 -28.66 5.55 -466.79 -2.59 -31.25 16 14 C 0.27 14.28 5.43 85.63 0.46 14.74 16 15 C -0.56 -29.73 9.28 25.60 0.24 -29.49 16 16 H 0.08 4.05 7.60 -2.91 -0.02 4.03 16 17 C 0.00 0.27 5.46 84.65 0.46 0.73 16 18 N -0.93 -55.27 13.29 21.45 0.28 -54.98 16 19 Si 0.98 41.81 29.54 68.60 2.03 43.84 16 20 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 21 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 22 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 23 C -0.17 -4.25 6.03 -20.26 -0.12 -4.38 16 24 C -0.09 -1.81 5.96 -18.96 -0.11 -1.92 16 25 C -0.10 -1.77 9.06 71.24 0.65 -1.13 16 26 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.10 0.55 6.51 -2.39 -0.02 0.53 16 29 H 0.24 3.03 8.06 -2.91 -0.02 3.00 16 30 H 0.14 3.37 8.14 -2.40 -0.02 3.35 16 31 H 0.14 3.37 8.14 -2.40 -0.02 3.35 16 32 H 0.41 13.86 8.32 -92.71 -0.77 13.09 16 33 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 34 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 35 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 36 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.10 1.20 6.49 -2.39 -0.02 1.19 16 38 H 0.06 1.35 5.13 -10.81 -0.06 1.29 16 Total: -1.00 -73.49 351.33 0.81 -72.69 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.31 Total: 14.22 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 6.99 Total: 10.04 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -6.16 Total: -115.79 kcal Atomic # 8 Polarization: -27.70 SS G_CDS: -0.05 Total: -27.74 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.84 kcal Atomic # 16 Polarization: 5.06 SS G_CDS: -2.31 Total: 2.76 kcal Total: -73.49 0.81 -72.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006113059.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.978 kcal (2) G-P(sol) polarization free energy of solvation -73.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds