Wall clock time and date at job start Tue Mar 31 2020 20:00:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99609 * 2 1 4 4 H 1.48507 * 109.46984 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47215 * 299.99618 * 3 2 1 6 6 H 1.48499 * 109.47738 * 59.99881 * 3 2 1 7 7 C 1.37871 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00184 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00165 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99864 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00323 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99891 * 179.97438 * 11 10 9 14 14 O 1.45207 * 109.46999 * 180.02562 * 13 11 10 15 15 C 1.34854 * 116.99999 * 180.02562 * 14 13 11 16 16 O 1.21585 * 119.99774 * 359.97438 * 15 14 13 17 17 C 1.46771 * 120.00120 * 180.02562 * 15 14 13 18 18 C 1.33783 * 124.66637 * 179.97438 * 17 15 14 19 19 C 1.40328 * 115.56547 * 180.02562 * 18 17 15 20 20 C 1.40070 * 112.60104 * 359.97438 * 19 18 17 21 21 C 1.39847 * 119.94801 * 179.97438 * 20 19 18 22 22 C 1.37430 * 120.39233 * 0.02562 * 21 20 19 23 23 C 1.38892 * 120.22573 * 359.68774 * 22 21 20 24 24 C 1.37204 * 120.51757 * 0.58799 * 23 22 21 25 25 F 1.35104 * 119.83639 * 179.70240 * 24 23 22 26 26 S 1.75475 * 124.66631 * 0.02562 * 17 15 14 27 27 H 0.96998 * 120.00650 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47313 * 59.99818 * 9 7 2 29 29 H 1.08998 * 109.46952 * 299.99799 * 9 7 2 30 30 H 0.97000 * 120.00144 * 359.97438 * 10 9 7 31 31 H 1.08999 * 109.47584 * 60.00154 * 13 11 10 32 32 H 1.08998 * 109.47351 * 300.00031 * 13 11 10 33 33 H 1.08004 * 122.21899 * 0.05198 * 18 17 15 34 34 H 1.08000 * 119.80112 * 180.02562 * 21 20 19 35 35 H 1.07995 * 119.89019 * 179.97438 * 22 21 20 36 36 H 1.07997 * 119.73799 * 180.31697 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6125 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5616 -5.1050 0.0020 13 6 2.7333 -6.0286 0.0005 14 8 2.0073 -7.2862 0.0006 15 6 2.7418 -8.4172 0.0007 16 8 3.9560 -8.3534 0.0001 17 6 2.0756 -9.7249 0.0002 18 6 2.7106 -10.9025 -0.0003 19 6 1.8839 -12.0363 -0.0012 20 6 0.5219 -11.7094 -0.0009 21 6 -0.4398 -12.7248 -0.0023 22 6 -0.0572 -14.0448 -0.0034 23 6 1.2901 -14.3822 -0.0097 24 6 2.2531 -13.4050 -0.0028 25 9 3.5597 -13.7489 -0.0030 26 16 0.3365 -9.9591 -0.0011 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 3.1568 -3.4353 0.0002 31 1 3.3607 -5.9708 0.8900 32 1 3.3593 -5.9710 -0.8900 33 1 3.7882 -10.9756 0.0005 34 1 -1.4893 -12.4700 -0.0025 35 1 -0.8067 -14.8223 -0.0041 36 1 1.5818 -15.4220 -0.0158 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000007250453.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:56 Heat of formation + Delta-G solvation = -119.465247 kcal Electronic energy + Delta-G solvation = -24265.048796 eV Core-core repulsion = 20141.436807 eV Total energy + Delta-G solvation = -4123.611989 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.40943 -40.72747 -39.89804 -38.76424 -36.68006 -35.70271 -34.29218 -32.44678 -31.10853 -30.54429 -29.15308 -26.86234 -25.28890 -24.02475 -22.71735 -22.10265 -20.50126 -19.98509 -19.28469 -17.99268 -17.62031 -17.03263 -16.79341 -16.49974 -16.36944 -16.15726 -15.71440 -15.46328 -15.13267 -14.84604 -14.79135 -14.37237 -13.88169 -13.78282 -13.57548 -13.10115 -13.07406 -12.63886 -12.23947 -12.17854 -12.03245 -11.85867 -11.70165 -11.21041 -11.02136 -10.97551 -10.94117 -10.82669 -10.36968 -10.07490 -9.44972 -9.24351 -9.22021 -8.81523 -8.17327 -8.02986 -6.22014 -4.29508 -0.34534 0.50272 0.90385 1.28581 1.39535 2.14423 2.46110 2.96519 3.11871 3.20962 3.28254 3.31184 3.62989 3.82126 4.08897 4.22151 4.29961 4.37276 4.58552 4.66147 4.93517 5.00657 5.08349 5.13600 5.16041 5.26303 5.29585 5.38372 5.55520 5.61108 5.71280 6.06887 6.19792 7.18529 7.25239 7.39563 7.42633 7.58678 7.89094 8.45457 8.67633 8.91826 9.37034 10.88134 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.034524 B = 0.001869 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.835575 B =14980.046637 C =15770.433408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.545 4.545 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.705 5.705 11 C 0.500 3.500 12 O -0.533 6.533 13 C 0.050 3.950 14 O -0.322 6.322 15 C 0.537 3.463 16 O -0.493 6.493 17 C -0.212 4.212 18 C -0.029 4.029 19 C -0.124 4.124 20 C -0.118 4.118 21 C -0.096 4.096 22 C -0.063 4.063 23 C -0.160 4.160 24 C 0.152 3.848 25 F -0.129 7.129 26 S 0.214 5.786 27 H 0.266 0.734 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.393 0.607 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.161 0.839 34 H 0.139 0.861 35 H 0.144 0.856 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.430 -29.717 -0.014 29.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.355 5.355 11 C 0.283 3.717 12 O -0.410 6.410 13 C -0.027 4.027 14 O -0.237 6.237 15 C 0.379 3.621 16 O -0.382 6.382 17 C -0.329 4.329 18 C -0.061 4.061 19 C -0.133 4.133 20 C -0.236 4.236 21 C -0.118 4.118 22 C -0.085 4.085 23 C -0.181 4.181 24 C 0.130 3.870 25 F -0.108 7.108 26 S 0.485 5.515 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.226 0.774 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.178 0.822 34 H 0.157 0.843 35 H 0.162 0.838 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 0.569 -28.520 -0.014 28.526 hybrid contribution 2.550 0.132 0.001 2.553 sum 3.119 -28.388 -0.013 28.559 Atomic orbital electron populations 1.69976 1.06119 1.27339 1.48716 1.24954 0.94942 0.99524 0.94593 0.86331 0.79814 0.82799 0.77788 1.19600 1.20754 1.20758 1.21243 0.93387 0.90268 1.53466 0.91683 1.19193 0.88149 0.81498 0.98081 1.46362 1.11586 1.05262 1.72336 1.19824 0.89062 0.83950 0.78907 1.90717 1.16233 1.84501 1.49531 1.22969 0.94495 0.80267 1.04993 1.86627 1.39682 1.13877 1.83525 1.19677 0.85217 0.83807 0.73350 1.90902 1.13978 1.87605 1.45717 1.22587 0.99125 0.94333 1.16882 1.20097 1.02027 0.88647 0.95333 1.18008 0.92750 0.92635 1.09882 1.23215 0.95838 0.99854 1.04665 1.20571 0.98783 0.91026 1.01462 1.20976 0.95225 0.95929 0.96344 1.20952 0.92684 0.99430 1.05033 1.17579 0.78272 0.90841 1.00286 1.91532 1.33353 1.92605 1.93269 1.84972 0.99714 0.93742 1.73115 0.92401 0.95204 0.95192 0.77364 0.88102 0.88109 0.82201 0.84291 0.83804 0.83826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.55 -14.50 9.28 -34.44 -0.32 -14.82 16 8 H 0.07 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.49 5.43 -5.20 -0.03 6.46 16 10 N -0.71 -14.37 5.55 -61.48 -0.34 -14.71 16 11 C 0.50 9.87 7.91 -10.98 -0.09 9.78 16 12 O -0.53 -12.82 16.50 -14.10 -0.23 -13.05 16 13 C 0.05 0.75 5.96 36.01 0.21 0.97 16 14 O -0.32 -5.16 9.57 -47.60 -0.46 -5.62 16 15 C 0.54 7.76 7.93 34.18 0.27 8.03 16 16 O -0.49 -7.65 16.51 -19.33 -0.32 -7.97 16 17 C -0.21 -2.61 6.31 -37.70 -0.24 -2.85 16 18 C -0.03 -0.31 9.71 -40.36 -0.39 -0.70 16 19 C -0.12 -1.22 5.87 -107.08 -0.63 -1.84 16 20 C -0.12 -1.08 6.50 -38.29 -0.25 -1.33 16 21 C -0.10 -0.62 10.06 -39.27 -0.40 -1.01 16 22 C -0.06 -0.31 10.03 -39.63 -0.40 -0.71 16 23 C -0.16 -0.96 9.96 -39.72 -0.40 -1.35 16 24 C 0.15 1.30 7.37 -38.61 -0.28 1.01 16 25 F -0.13 -1.20 17.19 2.25 0.04 -1.16 16 26 S 0.21 2.32 23.05 -107.50 -2.48 -0.16 16 27 H 0.27 7.22 8.31 -40.82 -0.34 6.89 16 28 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.39 6.70 8.32 -40.82 -0.34 6.36 16 31 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 32 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 33 H 0.16 1.62 7.96 -52.48 -0.42 1.20 16 34 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.14 0.26 8.06 -52.49 -0.42 -0.16 16 36 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 LS Contribution 349.19 15.07 5.26 5.26 Total: -1.00 -33.51 349.19 -9.09 -42.60 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -3.25 Total: 0.90 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -3.03 Total: 3.28 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.40 Total: -39.64 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: -1.01 Total: -26.64 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.48 Total: -0.16 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.51 -9.09 -42.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007250453.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.867 kcal (2) G-P(sol) polarization free energy of solvation -33.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds