Wall clock time and date at job start Tue Mar 31 2020 20:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86798 * 119.99609 * 2 1 4 4 H 1.48507 * 109.46984 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47215 * 299.99618 * 3 2 1 6 6 H 1.48499 * 109.47738 * 59.99881 * 3 2 1 7 7 C 1.37871 * 120.00203 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00184 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00165 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47090 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99864 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00323 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99891 * 179.97438 * 11 10 9 14 14 O 1.45207 * 109.46999 * 180.02562 * 13 11 10 15 15 C 1.34854 * 116.99999 * 180.02562 * 14 13 11 16 16 O 1.21585 * 119.99774 * 359.97438 * 15 14 13 17 17 C 1.46771 * 120.00120 * 180.02562 * 15 14 13 18 18 C 1.33783 * 124.66637 * 179.97438 * 17 15 14 19 19 C 1.40328 * 115.56547 * 180.02562 * 18 17 15 20 20 C 1.40070 * 112.60104 * 359.97438 * 19 18 17 21 21 C 1.39847 * 119.94801 * 179.97438 * 20 19 18 22 22 C 1.37430 * 120.39233 * 0.02562 * 21 20 19 23 23 C 1.38892 * 120.22573 * 359.68774 * 22 21 20 24 24 C 1.37204 * 120.51757 * 0.58799 * 23 22 21 25 25 F 1.35104 * 119.83639 * 179.70240 * 24 23 22 26 26 S 1.75475 * 124.66631 * 0.02562 * 17 15 14 27 27 H 0.96998 * 120.00650 * 0.02562 * 1 2 3 28 28 H 1.08996 * 109.47313 * 59.99818 * 9 7 2 29 29 H 1.08998 * 109.46952 * 299.99799 * 9 7 2 30 30 H 0.97000 * 120.00144 * 359.97438 * 10 9 7 31 31 H 1.08999 * 109.47584 * 60.00154 * 13 11 10 32 32 H 1.08998 * 109.47351 * 300.00031 * 13 11 10 33 33 H 1.08004 * 122.21899 * 0.05198 * 18 17 15 34 34 H 1.08000 * 119.80112 * 180.02562 * 21 20 19 35 35 H 1.07995 * 119.89019 * 179.97438 * 22 21 20 36 36 H 1.07997 * 119.73799 * 180.31697 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3966 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6125 0.0005 11 6 1.7539 -4.8833 0.0011 12 8 0.5616 -5.1050 0.0020 13 6 2.7333 -6.0286 0.0005 14 8 2.0073 -7.2862 0.0006 15 6 2.7418 -8.4172 0.0007 16 8 3.9560 -8.3534 0.0001 17 6 2.0756 -9.7249 0.0002 18 6 2.7106 -10.9025 -0.0003 19 6 1.8839 -12.0363 -0.0012 20 6 0.5219 -11.7094 -0.0009 21 6 -0.4398 -12.7248 -0.0023 22 6 -0.0572 -14.0448 -0.0034 23 6 1.2901 -14.3822 -0.0097 24 6 2.2531 -13.4050 -0.0028 25 9 3.5597 -13.7489 -0.0030 26 16 0.3365 -9.9591 -0.0011 27 1 -0.4851 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8896 29 1 0.6241 -2.5567 0.8903 30 1 3.1568 -3.4353 0.0002 31 1 3.3607 -5.9708 0.8900 32 1 3.3593 -5.9710 -0.8900 33 1 3.7882 -10.9756 0.0005 34 1 -1.4893 -12.4700 -0.0025 35 1 -0.8067 -14.8223 -0.0041 36 1 1.5818 -15.4220 -0.0158 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000007250453.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:55 Heat of formation + Delta-G solvation = -140.017500 kcal Electronic energy + Delta-G solvation = -24265.940008 eV Core-core repulsion = 20141.436807 eV Total energy + Delta-G solvation = -4124.503201 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.05903 -41.87753 -40.68200 -40.30569 -37.83649 -36.47610 -36.21158 -34.43998 -31.73201 -31.43442 -30.52302 -28.60017 -26.20153 -24.86620 -24.40837 -22.97032 -21.70593 -21.36182 -20.16355 -19.22305 -18.84607 -18.11564 -17.99454 -17.60451 -17.28408 -16.94611 -16.92866 -16.82502 -16.35877 -16.29432 -15.96571 -15.48914 -14.85761 -14.85364 -14.43373 -14.36545 -14.22740 -14.07249 -13.83958 -13.72302 -12.92885 -12.84405 -12.76776 -12.76419 -12.38389 -12.23613 -12.14731 -12.06711 -11.87580 -11.48170 -10.97108 -10.84403 -10.74323 -9.96060 -9.90021 -8.88728 -8.30804 -6.47357 -1.11280 -0.05629 0.13508 0.51253 0.62825 0.98942 1.44043 1.44297 1.47133 1.52177 1.58114 2.29444 2.39700 2.47964 3.04580 3.04621 3.31122 3.51701 3.63607 3.74804 3.79203 3.97312 3.98441 4.20465 4.33881 4.40803 4.53278 4.79549 4.92754 4.98662 5.06895 5.07856 5.20419 5.22772 5.39500 5.60760 5.69210 5.80676 6.25736 6.61369 6.74098 7.18337 7.32737 8.81508 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.034524 B = 0.001869 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.835575 B =14980.046637 C =15770.433408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.557 4.557 8 H 0.086 0.914 9 C 0.266 3.734 10 N -0.697 5.697 11 C 0.501 3.499 12 O -0.581 6.581 13 C 0.060 3.940 14 O -0.341 6.341 15 C 0.541 3.459 16 O -0.509 6.509 17 C -0.242 4.242 18 C -0.014 4.014 19 C -0.148 4.148 20 C -0.116 4.116 21 C -0.102 4.102 22 C -0.040 4.040 23 C -0.148 4.148 24 C 0.135 3.865 25 F -0.137 7.137 26 S 0.182 5.818 27 H 0.269 0.731 28 H -0.007 1.007 29 H -0.007 1.007 30 H 0.413 0.587 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.162 0.838 34 H 0.161 0.839 35 H 0.188 0.812 36 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.548 -31.932 -0.018 32.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.594 4.594 8 H 0.104 0.896 9 C 0.144 3.856 10 N -0.349 5.349 11 C 0.286 3.714 12 O -0.462 6.462 13 C -0.016 4.016 14 O -0.257 6.257 15 C 0.386 3.614 16 O -0.400 6.400 17 C -0.358 4.358 18 C -0.047 4.047 19 C -0.156 4.156 20 C -0.233 4.233 21 C -0.125 4.125 22 C -0.062 4.062 23 C -0.169 4.169 24 C 0.113 3.887 25 F -0.116 7.116 26 S 0.452 5.548 27 H 0.078 0.922 28 H 0.011 0.989 29 H 0.011 0.989 30 H 0.250 0.750 31 H 0.147 0.853 32 H 0.147 0.853 33 H 0.179 0.821 34 H 0.179 0.821 35 H 0.205 0.795 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 1.746 -30.761 -0.019 30.811 hybrid contribution 2.116 0.544 0.003 2.185 sum 3.862 -30.217 -0.016 30.463 Atomic orbital electron populations 1.70132 1.08224 1.28583 1.49865 1.26052 0.95793 1.03881 0.93853 0.85098 0.79078 0.77310 0.77644 1.17658 1.20496 1.20507 1.21643 0.94457 0.90371 1.52974 0.89560 1.18644 0.88554 0.83723 0.94672 1.46026 1.11802 1.04605 1.72435 1.20583 0.89211 0.84662 0.76934 1.90694 1.18808 1.85259 1.51402 1.22875 0.92712 0.78329 1.07712 1.86615 1.40615 1.14491 1.83943 1.19903 0.85052 0.83845 0.72606 1.90875 1.14429 1.87772 1.46908 1.22438 0.99769 0.93610 1.19998 1.20252 1.02273 0.88790 0.93353 1.18117 0.92966 0.93046 1.11500 1.23321 0.96251 0.98887 1.04826 1.21007 0.99457 0.91111 1.00898 1.21521 0.95638 0.96080 0.92965 1.21413 0.92576 1.00270 1.02614 1.17842 0.78573 0.90803 1.01470 1.91512 1.34050 1.92558 1.93472 1.84936 0.99256 0.96178 1.74404 0.92187 0.98884 0.98876 0.75041 0.85263 0.85272 0.82070 0.82095 0.79525 0.80910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.48 13.29 21.44 0.28 -55.19 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.99 41.92 29.54 68.60 2.03 43.95 16 4 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 6 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 7 C -0.56 -29.77 9.28 25.60 0.24 -29.53 16 8 H 0.09 4.15 7.60 -2.91 -0.02 4.12 16 9 C 0.27 14.37 5.43 85.63 0.46 14.84 16 10 N -0.70 -28.80 5.55 -466.80 -2.59 -31.39 16 11 C 0.50 20.20 7.91 87.66 0.69 20.89 16 12 O -0.58 -29.37 16.50 15.77 0.26 -29.11 16 13 C 0.06 1.78 5.96 71.24 0.42 2.20 16 14 O -0.34 -11.16 9.57 -51.27 -0.49 -11.65 16 15 C 0.54 15.98 7.93 70.05 0.56 16.54 16 16 O -0.51 -15.81 16.51 19.56 0.32 -15.49 16 17 C -0.24 -6.17 6.31 23.49 0.15 -6.03 16 18 C -0.01 -0.30 9.71 21.77 0.21 -0.09 16 19 C -0.15 -2.83 5.87 -21.46 -0.13 -2.95 16 20 C -0.12 -2.01 6.50 23.10 0.15 -1.86 16 21 C -0.10 -1.03 10.06 22.47 0.23 -0.80 16 22 C -0.04 -0.22 10.03 22.24 0.22 0.01 16 23 C -0.15 -1.22 9.96 22.18 0.22 -1.00 16 24 C 0.13 2.07 7.37 22.90 0.17 2.24 16 25 F -0.14 -2.39 17.19 44.97 0.77 -1.62 16 26 S 0.18 4.11 23.05 -56.49 -1.30 2.81 16 27 H 0.27 14.96 8.31 -92.71 -0.77 14.19 16 28 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 29 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 30 H 0.41 13.68 8.32 -92.71 -0.77 12.91 16 31 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 32 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 33 H 0.16 3.37 7.96 -2.91 -0.02 3.34 16 34 H 0.16 0.90 8.06 -2.91 -0.02 0.88 16 35 H 0.19 -0.50 8.06 -2.91 -0.02 -0.53 16 36 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 Total: -1.00 -76.85 349.19 3.73 -73.12 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 0.39 Total: 9.43 kcal Atomic # 6 Polarization: 11.07 SS G_CDS: 4.06 Total: 15.13 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: -2.30 Total: -86.58 kcal Atomic # 8 Polarization: -56.34 SS G_CDS: 0.09 Total: -56.25 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.77 Total: -1.62 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Atomic # 16 Polarization: 4.11 SS G_CDS: -1.30 Total: 2.81 kcal Total: -76.85 3.73 -73.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000007250453.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.895 kcal (2) G-P(sol) polarization free energy of solvation -76.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds