Wall clock time and date at job start Tue Mar 31 2020 20:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00151 * 2 1 4 4 H 1.48494 * 109.47095 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47017 * 299.99580 * 3 2 1 6 6 H 1.48496 * 109.47329 * 59.99419 * 3 2 1 7 7 C 1.37875 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00378 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99665 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47113 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00398 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99493 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00128 * 179.97438 * 11 10 9 14 14 O 1.45196 * 109.46925 * 179.97438 * 13 11 10 15 15 C 1.34852 * 116.99895 * 179.97438 * 14 13 11 16 16 O 1.21577 * 120.00085 * 0.02562 * 15 14 13 17 17 C 1.46776 * 119.99921 * 180.02562 * 15 14 13 18 18 C 1.33791 * 124.66131 * 179.97438 * 17 15 14 19 19 C 1.40359 * 115.56716 * 180.02562 * 18 17 15 20 20 C 1.41614 * 128.80316 * 180.29322 * 19 18 17 21 21 C 1.35849 * 120.53039 * 180.25398 * 20 19 18 22 22 C 1.39222 * 120.66388 * 359.45167 * 21 20 19 23 23 F 1.35107 * 119.92982 * 180.27858 * 22 21 20 24 24 C 1.37634 * 120.13694 * 0.25772 * 22 21 20 25 25 C 1.39845 * 120.16347 * 0.02562 * 24 22 21 26 26 S 1.75477 * 124.66400 * 0.02562 * 17 15 14 27 27 H 0.97004 * 119.99672 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47578 * 60.00008 * 9 7 2 29 29 H 1.08998 * 109.47474 * 299.99610 * 9 7 2 30 30 H 0.97006 * 120.00108 * 359.97438 * 10 9 7 31 31 H 1.09006 * 109.46896 * 59.99495 * 13 11 10 32 32 H 1.08998 * 109.46748 * 299.99582 * 13 11 10 33 33 H 1.07995 * 122.21670 * 0.02562 * 18 17 15 34 34 H 1.08002 * 119.73381 * 359.97438 * 20 19 18 35 35 H 1.08002 * 119.67062 * 179.73530 * 21 20 19 36 36 H 1.07997 * 119.91735 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7537 -4.8834 0.0015 12 8 0.5613 -5.1049 0.0006 13 6 2.7330 -6.0288 0.0022 14 8 2.0070 -7.2862 0.0023 15 6 2.7414 -8.4172 0.0023 16 8 3.9555 -8.3536 0.0028 17 6 2.0750 -9.7250 0.0019 18 6 2.7101 -10.9026 0.0014 19 6 1.8832 -12.0367 0.0005 20 6 2.2521 -13.4039 0.0054 21 6 1.3022 -14.3751 -0.0016 22 6 -0.0504 -14.0453 -0.0024 23 9 -0.9827 -15.0232 -0.0038 24 6 -0.4398 -12.7252 -0.0014 25 6 0.5211 -11.7091 0.0000 26 16 0.3359 -9.9590 0.0006 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 3.1566 -3.4355 0.0021 31 1 3.3591 -5.9710 0.8926 32 1 3.3602 -5.9711 -0.8874 33 1 3.7875 -10.9756 0.0017 34 1 3.2971 -13.6768 0.0104 35 1 1.5992 -15.4135 -0.0020 36 1 -1.4900 -12.4734 -0.0016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000026222502.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:03 Heat of formation + Delta-G solvation = -119.534594 kcal Electronic energy + Delta-G solvation = -24079.278337 eV Core-core repulsion = 19955.663341 eV Total energy + Delta-G solvation = -4123.614996 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.43358 -40.75461 -40.01247 -38.76769 -36.64229 -35.45703 -34.29517 -32.44926 -31.79577 -30.31263 -29.05406 -26.83244 -25.08340 -24.21977 -22.73905 -22.08477 -20.53737 -19.99174 -19.21949 -18.20792 -17.65177 -16.99877 -16.79416 -16.42059 -16.32865 -16.13885 -15.82750 -15.41154 -15.14425 -14.82147 -14.44337 -14.39015 -14.00399 -13.96371 -13.47446 -13.16531 -13.07902 -12.91618 -12.63500 -12.04080 -11.87753 -11.84275 -11.49613 -11.11250 -11.02151 -10.97901 -10.94033 -10.83288 -10.37640 -10.37278 -9.45316 -9.24715 -9.01524 -8.81806 -8.26657 -8.03310 -6.22307 -4.29820 -0.35226 0.54441 0.89245 1.24247 1.42082 2.15122 2.43752 2.98900 3.11506 3.20697 3.27976 3.30882 3.67734 3.81395 4.03609 4.27476 4.32231 4.38855 4.55826 4.60349 4.91381 5.00426 5.11710 5.13126 5.15473 5.23976 5.28542 5.34405 5.45672 5.62027 5.72385 6.06657 6.19107 7.18261 7.24853 7.38917 7.42366 7.58320 7.88828 8.45082 8.67345 8.91519 9.36736 10.87829 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.034966 B = 0.001794 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.591655 B =15602.824623 C =16382.968708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.064 3.936 3 Si 0.906 3.094 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.546 4.546 8 H 0.065 0.935 9 C 0.251 3.749 10 N -0.705 5.705 11 C 0.500 3.500 12 O -0.532 6.532 13 C 0.050 3.950 14 O -0.323 6.323 15 C 0.537 3.463 16 O -0.494 6.494 17 C -0.215 4.215 18 C -0.029 4.029 19 C -0.103 4.103 20 C -0.032 4.032 21 C -0.157 4.157 22 C 0.130 3.870 23 F -0.131 7.131 24 C -0.124 4.124 25 C -0.119 4.119 26 S 0.212 5.788 27 H 0.266 0.734 28 H 0.030 0.970 29 H 0.030 0.970 30 H 0.393 0.607 31 H 0.101 0.899 32 H 0.101 0.899 33 H 0.161 0.839 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.047 -29.116 0.006 29.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.584 4.584 8 H 0.083 0.917 9 C 0.131 3.869 10 N -0.356 5.356 11 C 0.282 3.718 12 O -0.410 6.410 13 C -0.027 4.027 14 O -0.237 6.237 15 C 0.380 3.620 16 O -0.384 6.384 17 C -0.332 4.332 18 C -0.062 4.062 19 C -0.111 4.111 20 C -0.051 4.051 21 C -0.177 4.177 22 C 0.107 3.893 23 F -0.110 7.110 24 C -0.147 4.147 25 C -0.236 4.236 26 S 0.483 5.517 27 H 0.076 0.924 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.226 0.774 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.178 0.822 34 H 0.161 0.839 35 H 0.162 0.838 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 3.084 -27.960 0.006 28.130 hybrid contribution 2.023 0.024 -0.001 2.023 sum 5.107 -27.936 0.006 28.399 Atomic orbital electron populations 1.69982 1.06123 1.27334 1.48697 1.24957 0.94940 0.99524 0.94588 0.86331 0.79807 0.82802 0.77794 1.19602 1.20753 1.20758 1.21242 0.93384 0.90268 1.53490 0.91681 1.19194 0.88150 0.81496 0.98083 1.46366 1.11576 1.05266 1.72344 1.19831 0.89072 0.83958 0.78920 1.90719 1.16236 1.84503 1.49508 1.22963 0.94481 0.80290 1.04969 1.86629 1.39709 1.13903 1.83493 1.19700 0.85209 0.83832 0.73279 1.90894 1.13979 1.87627 1.45862 1.22645 0.99065 0.94450 1.17039 1.20183 1.01909 0.88737 0.95322 1.18155 0.91386 0.94397 1.07179 1.20699 1.00163 0.89509 0.94778 1.20701 0.90845 1.01319 1.04883 1.17486 0.86294 0.84733 1.00816 1.91544 1.64768 1.61160 1.93509 1.20334 0.99940 0.89714 1.04735 1.23046 0.96407 0.99377 1.04815 1.85013 0.99866 0.93717 1.73152 0.92399 0.95197 0.95203 0.77374 0.88117 0.88112 0.82183 0.83946 0.83831 0.83753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.63 13.29 55.43 0.74 -24.89 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 4 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.55 -14.46 9.28 -34.44 -0.32 -14.77 16 8 H 0.07 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.47 5.43 -5.19 -0.03 6.44 16 10 N -0.71 -14.27 5.55 -61.47 -0.34 -14.61 16 11 C 0.50 9.78 7.91 -10.98 -0.09 9.69 16 12 O -0.53 -12.77 16.50 -14.10 -0.23 -13.00 16 13 C 0.05 0.74 5.96 36.01 0.21 0.96 16 14 O -0.32 -5.06 9.57 -47.59 -0.46 -5.52 16 15 C 0.54 7.42 7.93 34.18 0.27 7.69 16 16 O -0.49 -7.28 16.51 -19.32 -0.32 -7.59 16 17 C -0.21 -2.47 6.31 -37.69 -0.24 -2.71 16 18 C -0.03 -0.26 9.79 -40.34 -0.39 -0.66 16 19 C -0.10 -0.86 5.87 -107.12 -0.63 -1.49 16 20 C -0.03 -0.19 10.02 -39.15 -0.39 -0.58 16 21 C -0.16 -0.91 9.92 -40.07 -0.40 -1.31 16 22 C 0.13 0.97 7.29 -39.44 -0.29 0.68 16 23 F -0.13 -1.06 17.26 2.25 0.04 -1.02 16 24 C -0.12 -0.99 10.05 -39.20 -0.39 -1.38 16 25 C -0.12 -1.09 6.50 -38.29 -0.25 -1.34 16 26 S 0.21 2.29 23.05 -107.50 -2.48 -0.19 16 27 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.39 6.63 8.32 -40.82 -0.34 6.29 16 31 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.16 1.20 7.96 -52.49 -0.42 0.79 16 34 H 0.14 0.44 8.06 -52.49 -0.42 0.02 16 35 H 0.14 0.50 8.06 -52.49 -0.42 0.08 16 36 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 349.22 15.07 5.26 5.26 Total: -1.00 -33.25 349.22 -9.09 -42.34 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -3.25 Total: 0.87 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -3.03 Total: 2.86 kcal Atomic # 7 Polarization: -39.89 SS G_CDS: 0.40 Total: -39.50 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -1.01 Total: -26.11 kcal Atomic # 9 Polarization: -1.06 SS G_CDS: 0.04 Total: -1.02 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Atomic # 16 Polarization: 2.29 SS G_CDS: -2.48 Total: -0.19 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -33.25 -9.09 -42.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026222502.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.197 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds