Wall clock time and date at job start Tue Mar 31 2020 20:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 120.00151 * 2 1 4 4 H 1.48494 * 109.47095 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47017 * 299.99580 * 3 2 1 6 6 H 1.48496 * 109.47329 * 59.99419 * 3 2 1 7 7 C 1.37875 * 120.00079 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00378 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99665 * 0.02562 * 7 2 1 10 10 N 1.46501 * 109.47113 * 180.02562 * 9 7 2 11 11 C 1.34780 * 120.00398 * 180.02562 * 10 9 7 12 12 O 1.21280 * 119.99493 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00128 * 179.97438 * 11 10 9 14 14 O 1.45196 * 109.46925 * 179.97438 * 13 11 10 15 15 C 1.34852 * 116.99895 * 179.97438 * 14 13 11 16 16 O 1.21577 * 120.00085 * 0.02562 * 15 14 13 17 17 C 1.46776 * 119.99921 * 180.02562 * 15 14 13 18 18 C 1.33791 * 124.66131 * 179.97438 * 17 15 14 19 19 C 1.40359 * 115.56716 * 180.02562 * 18 17 15 20 20 C 1.41614 * 128.80316 * 180.29322 * 19 18 17 21 21 C 1.35849 * 120.53039 * 180.25398 * 20 19 18 22 22 C 1.39222 * 120.66388 * 359.45167 * 21 20 19 23 23 F 1.35107 * 119.92982 * 180.27858 * 22 21 20 24 24 C 1.37634 * 120.13694 * 0.25772 * 22 21 20 25 25 C 1.39845 * 120.16347 * 0.02562 * 24 22 21 26 26 S 1.75477 * 124.66400 * 0.02562 * 17 15 14 27 27 H 0.97004 * 119.99672 * 0.02562 * 1 2 3 28 28 H 1.08998 * 109.47578 * 60.00008 * 9 7 2 29 29 H 1.08998 * 109.47474 * 299.99610 * 9 7 2 30 30 H 0.97006 * 120.00108 * 359.97438 * 10 9 7 31 31 H 1.09006 * 109.46896 * 59.99495 * 13 11 10 32 32 H 1.08998 * 109.46748 * 299.99582 * 13 11 10 33 33 H 1.07995 * 122.21670 * 0.02562 * 18 17 15 34 34 H 1.08002 * 119.73381 * 359.97438 * 20 19 18 35 35 H 1.08002 * 119.67062 * 179.73530 * 21 20 19 36 36 H 1.07997 * 119.91735 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4991 0.0005 10 7 2.2029 -3.6127 0.0018 11 6 1.7537 -4.8834 0.0015 12 8 0.5613 -5.1049 0.0006 13 6 2.7330 -6.0288 0.0022 14 8 2.0070 -7.2862 0.0023 15 6 2.7414 -8.4172 0.0023 16 8 3.9555 -8.3536 0.0028 17 6 2.0750 -9.7250 0.0019 18 6 2.7101 -10.9026 0.0014 19 6 1.8832 -12.0367 0.0005 20 6 2.2521 -13.4039 0.0054 21 6 1.3022 -14.3751 -0.0016 22 6 -0.0504 -14.0453 -0.0024 23 9 -0.9827 -15.0232 -0.0038 24 6 -0.4398 -12.7252 -0.0014 25 6 0.5211 -11.7091 0.0000 26 16 0.3359 -9.9590 0.0006 27 1 -0.4850 0.8401 -0.0004 28 1 0.6246 -2.5571 -0.8896 29 1 0.6240 -2.5567 0.8903 30 1 3.1566 -3.4355 0.0021 31 1 3.3591 -5.9710 0.8926 32 1 3.3602 -5.9711 -0.8874 33 1 3.7875 -10.9756 0.0017 34 1 3.2971 -13.6768 0.0104 35 1 1.5992 -15.4135 -0.0020 36 1 -1.4900 -12.4734 -0.0016 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000026222502.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:03 Heat of formation + Delta-G solvation = -139.732929 kcal Electronic energy + Delta-G solvation = -24080.154202 eV Core-core repulsion = 19955.663341 eV Total energy + Delta-G solvation = -4124.490861 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.05196 -41.83045 -40.76102 -40.31662 -37.77089 -36.21705 -36.17100 -34.43377 -32.35085 -31.33998 -30.32146 -28.54478 -25.98220 -24.91564 -24.48960 -22.95682 -21.69014 -21.32820 -20.07430 -19.20817 -18.98093 -18.16824 -17.94611 -17.53710 -17.23663 -16.91724 -16.84414 -16.75153 -16.46525 -16.27974 -15.95587 -14.92539 -14.90632 -14.86657 -14.60930 -14.39119 -14.12058 -14.08614 -13.84826 -13.70446 -13.51577 -12.92252 -12.76480 -12.55515 -12.23053 -12.16532 -12.04833 -12.02346 -11.72062 -11.47763 -10.99282 -10.95663 -10.84090 -9.95189 -9.68852 -8.98809 -8.30538 -6.47138 -1.07170 -0.00241 0.14296 0.50592 0.69178 1.05383 1.44401 1.44737 1.50011 1.54803 1.58544 2.30905 2.41035 2.50182 3.04952 3.09989 3.36918 3.51476 3.66375 3.79705 3.84208 4.00337 4.01637 4.04735 4.35184 4.48811 4.54633 4.84256 4.88991 4.97641 5.07255 5.08638 5.16282 5.20647 5.40346 5.61477 5.65922 5.81041 6.31453 6.61990 6.75367 7.19206 7.33952 8.81788 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.034966 B = 0.001794 C = 0.001709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.591655 B =15602.824623 C =16382.968708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.004 3.996 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.556 4.556 8 H 0.087 0.913 9 C 0.266 3.734 10 N -0.697 5.697 11 C 0.499 3.501 12 O -0.583 6.583 13 C 0.061 3.939 14 O -0.345 6.345 15 C 0.542 3.458 16 O -0.507 6.507 17 C -0.245 4.245 18 C 0.000 4.000 19 C -0.117 4.117 20 C -0.017 4.017 21 C -0.152 4.152 22 C 0.132 3.868 23 F -0.135 7.135 24 C -0.140 4.140 25 C -0.117 4.117 26 S 0.161 5.839 27 H 0.269 0.731 28 H -0.008 1.008 29 H -0.008 1.008 30 H 0.413 0.587 31 H 0.130 0.870 32 H 0.130 0.870 33 H 0.182 0.818 34 H 0.180 0.820 35 H 0.175 0.825 36 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.248 -31.059 0.008 32.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.176 1.176 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.594 4.594 8 H 0.105 0.895 9 C 0.144 3.856 10 N -0.349 5.349 11 C 0.285 3.715 12 O -0.464 6.464 13 C -0.015 4.015 14 O -0.261 6.261 15 C 0.386 3.614 16 O -0.397 6.397 17 C -0.362 4.362 18 C -0.033 4.033 19 C -0.125 4.125 20 C -0.036 4.036 21 C -0.172 4.172 22 C 0.109 3.891 23 F -0.113 7.113 24 C -0.164 4.164 25 C -0.234 4.234 26 S 0.430 5.570 27 H 0.078 0.922 28 H 0.010 0.990 29 H 0.010 0.990 30 H 0.250 0.750 31 H 0.148 0.852 32 H 0.148 0.852 33 H 0.199 0.801 34 H 0.198 0.802 35 H 0.192 0.808 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.343 -29.934 0.009 30.598 hybrid contribution 0.966 0.374 -0.001 1.036 sum 7.308 -29.559 0.007 30.449 Atomic orbital electron populations 1.70141 1.08266 1.28565 1.49902 1.26063 0.95783 1.03918 0.93853 0.85092 0.79114 0.77275 0.77615 1.17562 1.20535 1.20545 1.21647 0.94481 0.90345 1.52933 0.89480 1.18639 0.88579 0.83793 0.94609 1.46025 1.11778 1.04612 1.72455 1.20652 0.89258 0.84728 0.76882 1.90697 1.18927 1.85291 1.51439 1.22853 0.92582 0.78319 1.07751 1.86622 1.40820 1.14618 1.83999 1.19917 0.85080 0.83781 0.72594 1.90871 1.14184 1.87733 1.46933 1.22507 0.98893 0.94098 1.20670 1.20467 1.02876 0.88039 0.91871 1.18391 0.90685 0.95491 1.07926 1.21102 1.02090 0.87888 0.92543 1.21068 0.89728 1.02970 1.03453 1.17718 0.87124 0.84284 1.00015 1.91541 1.65174 1.61163 1.93442 1.20454 1.00265 0.90020 1.05617 1.23030 0.97306 0.97987 1.05064 1.85107 1.00761 0.96277 1.74821 0.92213 0.98957 0.98966 0.75012 0.85188 0.85182 0.80100 0.80237 0.80778 0.83307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.54 13.29 21.45 0.28 -55.26 16 2 C 0.00 0.19 5.46 84.65 0.46 0.66 16 3 Si 0.99 41.76 29.54 68.60 2.03 43.79 16 4 H -0.25 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.56 -29.63 9.28 25.60 0.24 -29.39 16 8 H 0.09 4.15 7.60 -2.91 -0.02 4.13 16 9 C 0.27 14.33 5.43 85.63 0.46 14.80 16 10 N -0.70 -28.53 5.55 -466.79 -2.59 -31.12 16 11 C 0.50 19.94 7.91 87.66 0.69 20.64 16 12 O -0.58 -29.46 16.50 15.77 0.26 -29.20 16 13 C 0.06 1.75 5.96 71.24 0.42 2.17 16 14 O -0.34 -10.91 9.57 -51.26 -0.49 -11.41 16 15 C 0.54 14.73 7.93 70.05 0.56 15.28 16 16 O -0.51 -14.15 16.51 19.58 0.32 -13.82 16 17 C -0.25 -5.59 6.31 23.49 0.15 -5.44 16 18 C 0.00 0.00 9.79 21.78 0.21 0.22 16 19 C -0.12 -1.70 5.87 -21.48 -0.13 -1.82 16 20 C -0.02 -0.13 10.02 22.55 0.23 0.10 16 21 C -0.15 -1.20 9.92 21.95 0.22 -0.98 16 22 C 0.13 1.69 7.29 22.36 0.16 1.85 16 23 F -0.13 -1.93 17.26 44.97 0.78 -1.15 16 24 C -0.14 -2.14 10.05 22.52 0.23 -1.91 16 25 C -0.12 -2.07 6.50 23.11 0.15 -1.92 16 26 S 0.16 3.66 23.05 -56.49 -1.30 2.36 16 27 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 28 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 29 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H 0.41 13.46 8.32 -92.70 -0.77 12.69 16 31 H 0.13 2.98 8.14 -2.38 -0.02 2.96 16 32 H 0.13 2.98 8.14 -2.39 -0.02 2.96 16 33 H 0.18 2.15 7.96 -2.91 -0.02 2.13 16 34 H 0.18 0.09 8.06 -2.91 -0.02 0.07 16 35 H 0.17 0.36 8.06 -2.91 -0.02 0.33 16 36 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 Total: -1.00 -75.91 349.22 3.73 -72.17 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: 0.39 Total: 9.40 kcal Atomic # 6 Polarization: 10.18 SS G_CDS: 4.06 Total: 14.24 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -2.30 Total: -86.38 kcal Atomic # 8 Polarization: -54.52 SS G_CDS: 0.09 Total: -54.43 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.78 Total: -1.15 kcal Atomic # 14 Polarization: 41.76 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.30 Total: 2.36 kcal Total: -75.91 3.73 -72.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000026222502.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.558 kcal (2) G-P(sol) polarization free energy of solvation -75.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds