Wall clock time and date at job start Tue Mar 31 2020 20:21:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 120.00006 * 2 1 4 4 C 1.50699 * 109.47105 * 275.56680 * 3 2 1 5 5 H 1.07999 * 119.99773 * 4.71696 * 4 3 2 6 6 C 1.37878 * 119.99754 * 184.71452 * 4 3 2 7 7 N 1.31506 * 120.00422 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99636 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47116 * 90.00290 * 8 6 4 10 10 H 1.48502 * 109.46732 * 210.00088 * 8 6 4 11 11 H 1.48494 * 109.47226 * 329.99844 * 8 6 4 12 12 S 1.65599 * 120.00090 * 179.97438 * 2 1 3 13 13 O 1.42094 * 106.40541 * 159.57812 * 12 2 1 14 14 O 1.42105 * 106.40298 * 26.65337 * 12 2 1 15 15 N 1.65601 * 107.21848 * 273.11858 * 12 2 1 16 16 C 1.46500 * 120.00301 * 62.77310 * 15 12 2 17 17 C 1.52998 * 109.47069 * 164.44666 * 16 15 12 18 18 N 1.46500 * 109.47069 * 180.02562 * 17 16 15 19 19 C 1.32241 * 119.37103 * 90.00015 * 18 17 16 20 20 O 1.21233 * 123.10355 * 0.03950 * 19 18 17 21 21 C 1.51309 * 113.80041 * 180.02562 * 19 18 17 22 22 S 1.82472 * 103.00565 * 359.97438 * 21 19 18 23 23 C 1.33472 * 119.36846 * 270.02222 * 18 17 16 24 24 O 1.21573 * 126.16788 * 359.97438 * 23 18 17 25 25 H 1.08995 * 109.47553 * 270.00161 * 1 2 3 26 26 H 1.09005 * 109.46902 * 30.00685 * 1 2 3 27 27 H 1.09003 * 109.46841 * 149.99857 * 1 2 3 28 28 H 1.09006 * 109.47137 * 35.56983 * 3 2 1 29 29 H 1.09005 * 109.47332 * 155.56536 * 3 2 1 30 30 H 0.97002 * 120.00299 * 179.97438 * 7 6 4 31 31 H 0.97007 * 120.00107 * 242.77525 * 15 12 2 32 32 H 1.08990 * 109.46991 * 44.44557 * 16 15 12 33 33 H 1.09005 * 109.46763 * 284.44500 * 16 15 12 34 34 H 1.09003 * 109.47616 * 60.00127 * 17 16 15 35 35 H 1.08997 * 109.47381 * 299.99860 * 17 16 15 36 36 H 1.09004 * 110.70498 * 118.37461 * 21 19 18 37 37 H 1.08997 * 110.70690 * 241.61894 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3293 1.7726 -1.4141 5 1 1.8447 1.2455 -2.2226 6 6 3.0685 2.9068 -1.6757 7 7 3.6590 3.5484 -0.6913 8 14 3.2313 3.5318 -3.4285 9 1 2.1294 4.4840 -3.7188 10 1 4.5366 4.2215 -3.5888 11 1 3.1574 2.3869 -4.3712 12 16 2.2930 -1.4341 0.0006 13 8 3.6000 -1.1432 -0.4751 14 8 1.4386 -2.3911 -0.6105 15 7 2.4636 -1.9010 1.5803 16 6 1.2782 -2.1952 2.3893 17 6 1.6962 -2.9590 3.6474 18 7 0.5107 -3.2537 4.4561 19 6 -0.1487 -4.3819 4.2532 20 8 0.1795 -5.2002 3.4211 21 6 -1.3505 -4.5575 5.1556 22 16 -1.3300 -3.0387 6.1669 23 6 0.1167 -2.3783 5.3834 24 8 0.6533 -1.3190 5.6441 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5140 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6552 2.0014 0.5978 29 1 3.1895 1.1156 0.4251 30 1 4.1793 4.3461 -0.8754 31 1 3.3485 -1.9796 1.9700 32 1 0.5841 -2.8030 1.8091 33 1 0.7928 -1.2620 2.6752 34 1 2.3904 -2.3512 4.2278 35 1 2.1817 -3.8920 3.3616 36 1 -2.2673 -4.6181 4.5691 37 1 -1.2347 -5.4403 5.7843 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049238934.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:10 Heat of formation + Delta-G solvation = -117.243469 kcal Electronic energy + Delta-G solvation = -25292.954846 eV Core-core repulsion = 21324.803114 eV Total energy + Delta-G solvation = -3968.151732 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 337.064 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.20327 -39.33182 -36.84495 -36.58095 -35.58138 -35.38125 -35.21335 -32.44785 -31.67540 -28.63843 -27.79731 -25.37736 -25.10127 -23.76070 -22.31350 -21.08570 -19.19484 -19.05574 -17.90733 -17.72390 -17.16644 -16.73219 -16.40713 -16.27882 -15.90007 -15.36836 -15.12901 -15.02747 -14.95843 -14.67107 -14.29287 -13.86191 -13.45036 -13.31526 -12.90549 -12.42117 -12.22346 -12.19305 -12.04692 -11.76134 -11.65543 -11.47239 -11.35266 -11.17980 -11.08192 -10.71696 -10.56314 -10.52954 -10.50228 -10.05402 -9.78437 -9.50341 -9.15316 -8.45234 -8.10707 -6.06871 -4.11367 0.17364 0.59826 0.76945 1.14315 1.93987 2.07436 3.21397 3.31344 3.37867 3.41645 3.44983 4.04674 4.18813 4.36781 4.40839 4.44529 4.51148 4.59229 4.93123 4.99349 5.27664 5.31766 5.36729 5.60102 5.80686 5.93407 6.03778 6.24160 6.33616 6.51904 6.81733 6.96707 7.23377 7.37844 7.59023 7.90203 8.19248 8.91099 9.54099 11.01777 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.021522 B = 0.002980 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.675269 B = 9392.769770 C = 9957.183780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.994 5.994 3 C 0.256 3.744 4 C -0.532 4.532 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.782 3.218 13 O -0.958 6.958 14 O -0.994 6.994 15 N -1.131 6.131 16 C 0.110 3.890 17 C 0.087 3.913 18 N -0.572 5.572 19 C 0.527 3.473 20 O -0.452 6.452 21 C -0.134 4.134 22 S -0.124 6.124 23 C 0.545 3.455 24 O -0.420 6.420 25 H 0.036 0.964 26 H 0.080 0.920 27 H 0.065 0.935 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.264 0.736 31 H 0.414 0.586 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.157 0.843 37 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.589 -16.174 16.109 25.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.837 5.837 3 C 0.134 3.866 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.197 1.197 12 S 2.789 3.211 13 O -0.942 6.942 14 O -0.978 6.978 15 N -0.889 5.889 16 C -0.019 4.019 17 C -0.039 4.039 18 N -0.319 5.319 19 C 0.313 3.687 20 O -0.322 6.322 21 C -0.285 4.285 22 S 0.103 5.897 23 C 0.224 3.776 24 O -0.291 6.291 25 H 0.055 0.945 26 H 0.098 0.902 27 H 0.084 0.916 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.247 0.753 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.174 0.826 37 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -10.647 -15.906 15.945 24.912 hybrid contribution 1.065 0.322 -1.209 1.643 sum -9.582 -15.584 14.735 23.491 Atomic orbital electron populations 1.21389 0.80274 1.03667 1.00037 1.57596 1.14259 1.23335 1.88523 1.19096 0.91240 0.78540 0.97724 1.21490 1.31914 1.10382 0.93385 0.92109 1.24940 0.94978 0.96522 0.97541 1.69915 1.33107 1.18903 1.31368 0.86501 0.77470 0.78916 0.84592 1.20592 1.21025 1.19699 1.01995 0.73505 0.72941 0.72612 1.93654 1.38561 1.84532 1.77449 1.93535 1.68963 1.61130 1.74148 1.56218 1.13321 1.86038 1.33357 1.21369 0.88610 0.99902 0.91984 1.22224 0.85909 1.03558 0.92176 1.46321 1.29760 1.20485 1.35309 1.19719 0.84226 0.80683 0.84106 1.90903 1.67168 1.42183 1.31944 1.24526 1.02114 1.01143 1.00723 1.88046 1.33400 1.20662 1.47636 1.21844 0.88306 0.85948 0.81532 1.90986 1.56601 1.19368 1.62105 0.94505 0.90168 0.91585 0.94929 0.93886 0.92637 0.75262 0.89914 0.91073 0.87247 0.87039 0.82573 0.82709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.57 10.69 59.85 0.64 2.21 16 2 N -0.99 -20.52 3.23 -123.05 -0.40 -20.92 16 3 C 0.26 6.43 5.10 -5.20 -0.03 6.40 16 4 C -0.53 -15.01 9.38 -34.44 -0.32 -15.33 16 5 H 0.06 1.71 7.81 -52.49 -0.41 1.30 16 6 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 7 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 12 S 2.78 54.60 6.09 -107.50 -0.65 53.95 16 13 O -0.96 -22.72 16.99 -57.17 -0.97 -23.69 16 14 O -0.99 -20.66 16.34 -57.17 -0.93 -21.60 16 15 N -1.13 -16.05 6.05 -10.62 -0.06 -16.11 16 16 C 0.11 1.32 6.58 -4.04 -0.03 1.29 16 17 C 0.09 0.81 5.33 -4.04 -0.02 0.79 16 18 N -0.57 -4.89 2.46 -119.49 -0.29 -5.18 16 19 C 0.53 4.00 7.80 -11.80 -0.09 3.91 16 20 O -0.45 -4.83 16.91 5.60 0.09 -4.74 16 21 C -0.13 -0.48 7.41 36.30 0.27 -0.21 16 22 S -0.12 -0.78 23.40 -107.50 -2.52 -3.29 16 23 C 0.54 5.06 8.34 53.47 0.45 5.51 16 24 O -0.42 -5.23 17.26 5.30 0.09 -5.14 16 25 H 0.04 0.51 8.05 -51.93 -0.42 0.09 16 26 H 0.08 1.38 8.07 -51.93 -0.42 0.97 16 27 H 0.07 1.05 7.05 -51.93 -0.37 0.69 16 28 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 29 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.41 4.93 8.66 -34.47 -0.30 4.63 16 32 H 0.08 1.03 7.79 -51.93 -0.40 0.63 16 33 H 0.07 0.85 8.05 -51.93 -0.42 0.44 16 34 H 0.11 0.94 7.61 -51.93 -0.40 0.55 16 35 H 0.11 0.97 7.46 -51.93 -0.39 0.58 16 36 H 0.16 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.16 0.17 8.14 -51.93 -0.42 -0.25 16 LS Contribution 349.73 15.07 5.27 5.27 Total: -1.00 -36.95 349.73 -8.20 -45.15 By element: Atomic # 1 Polarization: 2.97 SS G_CDS: -4.31 Total: -1.34 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 0.77 Total: 6.26 kcal Atomic # 7 Polarization: -67.73 SS G_CDS: -0.02 Total: -67.75 kcal Atomic # 8 Polarization: -53.45 SS G_CDS: -1.72 Total: -55.17 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 53.83 SS G_CDS: -3.17 Total: 50.66 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -36.95 -8.20 -45.15 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049238934.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.090 kcal (2) G-P(sol) polarization free energy of solvation -36.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds