Wall clock time and date at job start Tue Mar 31 2020 20:21:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 120.00006 * 2 1 4 4 C 1.50699 * 109.47105 * 275.56680 * 3 2 1 5 5 H 1.07999 * 119.99773 * 4.71696 * 4 3 2 6 6 C 1.37878 * 119.99754 * 184.71452 * 4 3 2 7 7 N 1.31506 * 120.00422 * 0.02562 * 6 4 3 8 8 Si 1.86806 * 119.99636 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47116 * 90.00290 * 8 6 4 10 10 H 1.48502 * 109.46732 * 210.00088 * 8 6 4 11 11 H 1.48494 * 109.47226 * 329.99844 * 8 6 4 12 12 S 1.65599 * 120.00090 * 179.97438 * 2 1 3 13 13 O 1.42094 * 106.40541 * 159.57812 * 12 2 1 14 14 O 1.42105 * 106.40298 * 26.65337 * 12 2 1 15 15 N 1.65601 * 107.21848 * 273.11858 * 12 2 1 16 16 C 1.46500 * 120.00301 * 62.77310 * 15 12 2 17 17 C 1.52998 * 109.47069 * 164.44666 * 16 15 12 18 18 N 1.46500 * 109.47069 * 180.02562 * 17 16 15 19 19 C 1.32241 * 119.37103 * 90.00015 * 18 17 16 20 20 O 1.21233 * 123.10355 * 0.03950 * 19 18 17 21 21 C 1.51309 * 113.80041 * 180.02562 * 19 18 17 22 22 S 1.82472 * 103.00565 * 359.97438 * 21 19 18 23 23 C 1.33472 * 119.36846 * 270.02222 * 18 17 16 24 24 O 1.21573 * 126.16788 * 359.97438 * 23 18 17 25 25 H 1.08995 * 109.47553 * 270.00161 * 1 2 3 26 26 H 1.09005 * 109.46902 * 30.00685 * 1 2 3 27 27 H 1.09003 * 109.46841 * 149.99857 * 1 2 3 28 28 H 1.09006 * 109.47137 * 35.56983 * 3 2 1 29 29 H 1.09005 * 109.47332 * 155.56536 * 3 2 1 30 30 H 0.97002 * 120.00299 * 179.97438 * 7 6 4 31 31 H 0.97007 * 120.00107 * 242.77525 * 15 12 2 32 32 H 1.08990 * 109.46991 * 44.44557 * 16 15 12 33 33 H 1.09005 * 109.46763 * 284.44500 * 16 15 12 34 34 H 1.09003 * 109.47616 * 60.00127 * 17 16 15 35 35 H 1.08997 * 109.47381 * 299.99860 * 17 16 15 36 36 H 1.09004 * 110.70498 * 118.37461 * 21 19 18 37 37 H 1.08997 * 110.70690 * 241.61894 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3293 1.7726 -1.4141 5 1 1.8447 1.2455 -2.2226 6 6 3.0685 2.9068 -1.6757 7 7 3.6590 3.5484 -0.6913 8 14 3.2313 3.5318 -3.4285 9 1 2.1294 4.4840 -3.7188 10 1 4.5366 4.2215 -3.5888 11 1 3.1574 2.3869 -4.3712 12 16 2.2930 -1.4341 0.0006 13 8 3.6000 -1.1432 -0.4751 14 8 1.4386 -2.3911 -0.6105 15 7 2.4636 -1.9010 1.5803 16 6 1.2782 -2.1952 2.3893 17 6 1.6962 -2.9590 3.6474 18 7 0.5107 -3.2537 4.4561 19 6 -0.1487 -4.3819 4.2532 20 8 0.1795 -5.2002 3.4211 21 6 -1.3505 -4.5575 5.1556 22 16 -1.3300 -3.0387 6.1669 23 6 0.1167 -2.3783 5.3834 24 8 0.6533 -1.3190 5.6441 25 1 -0.3634 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5140 27 1 -0.3633 -0.8900 -0.5139 28 1 1.6552 2.0014 0.5978 29 1 3.1895 1.1156 0.4251 30 1 4.1793 4.3461 -0.8754 31 1 3.3485 -1.9796 1.9700 32 1 0.5841 -2.8030 1.8091 33 1 0.7928 -1.2620 2.6752 34 1 2.3904 -2.3512 4.2278 35 1 2.1817 -3.8920 3.3616 36 1 -2.2673 -4.6181 4.5691 37 1 -1.2347 -5.4403 5.7843 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049238934.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:09 Heat of formation + Delta-G solvation = -147.611371 kcal Electronic energy + Delta-G solvation = -25294.271697 eV Core-core repulsion = 21324.803114 eV Total energy + Delta-G solvation = -3969.468583 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 337.064 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.86755 -40.05112 -38.38361 -37.57119 -37.26453 -36.92393 -36.42647 -34.53133 -32.32967 -29.70362 -29.38654 -26.84262 -26.09413 -24.60227 -24.24905 -21.79772 -20.54116 -19.70964 -19.13223 -18.60929 -18.56404 -18.40736 -17.90870 -17.36933 -16.88615 -16.67482 -16.13211 -15.99253 -15.93349 -15.73071 -15.31477 -15.07972 -14.95249 -14.34957 -14.13416 -13.98293 -13.80879 -13.38975 -13.24843 -13.13867 -13.05707 -12.96275 -12.93323 -12.67537 -12.50270 -12.39783 -12.11946 -12.00883 -11.78157 -11.35678 -11.17547 -10.72244 -10.59781 -9.84934 -9.63335 -8.22198 -6.34709 -0.50347 -0.34896 -0.04574 0.36332 1.29962 1.38205 1.40719 1.45113 1.51264 1.97742 2.38825 2.56198 2.70952 3.08960 3.33339 3.53603 3.67784 3.77070 4.02170 4.03820 4.11558 4.28027 4.34154 4.46481 4.65740 4.71523 4.80573 5.02671 5.16981 5.38603 5.40042 5.66754 5.70669 5.79718 6.00719 6.08463 6.20212 6.73956 7.34597 8.85629 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.021522 B = 0.002980 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.675269 B = 9392.769770 C = 9957.183780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.002 6.002 3 C 0.270 3.730 4 C -0.553 4.553 5 H 0.055 0.945 6 C 0.011 3.989 7 N -0.924 5.924 8 Si 0.958 3.042 9 H -0.264 1.264 10 H -0.279 1.279 11 H -0.273 1.273 12 S 2.801 3.199 13 O -1.004 7.004 14 O -1.006 7.006 15 N -1.116 6.116 16 C 0.105 3.895 17 C 0.089 3.911 18 N -0.573 5.573 19 C 0.527 3.473 20 O -0.485 6.485 21 C -0.119 4.119 22 S -0.099 6.099 23 C 0.536 3.464 24 O -0.464 6.464 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.027 0.973 29 H 0.020 0.980 30 H 0.268 0.732 31 H 0.426 0.574 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.186 0.814 37 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.351 -17.416 16.853 27.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.844 5.844 3 C 0.147 3.853 4 C -0.592 4.592 5 H 0.073 0.927 6 C -0.188 4.188 7 N -0.563 5.563 8 Si 0.783 3.217 9 H -0.190 1.190 10 H -0.204 1.204 11 H -0.198 1.198 12 S 2.808 3.192 13 O -0.988 6.988 14 O -0.989 6.989 15 N -0.879 5.879 16 C -0.022 4.022 17 C -0.037 4.037 18 N -0.319 5.319 19 C 0.315 3.685 20 O -0.357 6.357 21 C -0.269 4.269 22 S 0.128 5.872 23 C 0.217 3.783 24 O -0.338 6.338 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.095 0.905 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.077 0.923 31 H 0.262 0.738 32 H 0.099 0.901 33 H 0.091 0.909 34 H 0.133 0.867 35 H 0.137 0.863 36 H 0.203 0.797 37 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -12.457 -17.172 16.706 27.003 hybrid contribution 1.517 0.591 -1.343 2.110 sum -10.940 -16.582 15.363 25.113 Atomic orbital electron populations 1.21620 0.78117 1.03891 1.02301 1.57474 1.15761 1.21980 1.89202 1.18646 0.90561 0.80083 0.96027 1.21850 1.32035 1.10728 0.94633 0.92713 1.25780 0.94670 0.96788 1.01597 1.70009 1.33676 1.19376 1.33281 0.85552 0.78038 0.78460 0.79649 1.18951 1.20405 1.19795 1.01184 0.72175 0.72477 0.73369 1.93588 1.40845 1.85112 1.79263 1.93515 1.69036 1.61110 1.75258 1.55666 1.14954 1.85279 1.32010 1.21536 0.87528 1.00435 0.92717 1.22103 0.86693 1.03667 0.91287 1.46416 1.29587 1.20898 1.34996 1.20318 0.84704 0.79621 0.83895 1.90901 1.68245 1.43031 1.33566 1.24770 1.01128 1.00845 1.00117 1.88043 1.30472 1.21578 1.47131 1.22280 0.89036 0.85487 0.81500 1.90965 1.58348 1.20991 1.63496 0.91228 0.90779 0.90513 0.95523 0.96168 0.92325 0.73777 0.90058 0.90908 0.86663 0.86267 0.79682 0.79290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.84 10.69 127.77 1.37 4.21 16 2 N -1.00 -41.57 3.23 -543.21 -1.75 -43.32 16 3 C 0.27 13.89 5.10 85.63 0.44 14.33 16 4 C -0.55 -31.65 9.38 25.60 0.24 -31.41 16 5 H 0.05 3.12 7.81 -2.91 -0.02 3.09 16 6 C 0.01 0.65 5.46 84.66 0.46 1.11 16 7 N -0.92 -54.92 13.29 21.45 0.28 -54.64 16 8 Si 0.96 45.01 29.54 68.60 2.03 47.04 16 9 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 12 S 2.80 110.58 6.09 -56.49 -0.34 110.24 16 13 O -1.00 -48.80 16.99 -128.00 -2.17 -50.98 16 14 O -1.01 -41.39 16.34 -128.00 -2.09 -43.48 16 15 N -1.12 -31.38 6.05 -187.50 -1.13 -32.51 16 16 C 0.11 2.44 6.58 86.38 0.57 3.01 16 17 C 0.09 1.59 5.33 86.38 0.46 2.05 16 18 N -0.57 -8.96 2.46 -770.76 -1.90 -10.86 16 19 C 0.53 6.79 7.80 88.24 0.69 7.47 16 20 O -0.49 -9.52 16.91 -2.88 -0.05 -9.57 16 21 C -0.12 -0.40 7.41 71.43 0.53 0.13 16 22 S -0.10 -0.98 23.40 -56.49 -1.32 -2.30 16 23 C 0.54 9.32 8.34 129.99 1.08 10.41 16 24 O -0.46 -11.52 17.26 -3.94 -0.07 -11.58 16 25 H 0.07 1.82 8.05 -2.39 -0.02 1.81 16 26 H 0.07 2.52 8.07 -2.38 -0.02 2.50 16 27 H 0.08 2.36 7.05 -2.39 -0.02 2.34 16 28 H 0.03 1.38 8.11 -2.38 -0.02 1.37 16 29 H 0.02 1.13 7.50 -2.38 -0.02 1.11 16 30 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 31 H 0.43 10.08 8.66 -96.74 -0.84 9.24 16 32 H 0.08 1.93 7.79 -2.39 -0.02 1.91 16 33 H 0.07 1.68 8.05 -2.38 -0.02 1.66 16 34 H 0.12 1.93 7.61 -2.39 -0.02 1.91 16 35 H 0.12 1.95 7.46 -2.39 -0.02 1.93 16 36 H 0.19 -0.28 8.14 -2.38 -0.02 -0.30 16 37 H 0.19 -0.51 8.14 -2.39 -0.02 -0.53 16 Total: -1.00 -81.12 349.73 -2.40 -83.52 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.28 Total: 7.15 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 5.83 Total: 11.30 kcal Atomic # 7 Polarization: -136.83 SS G_CDS: -4.50 Total: -141.33 kcal Atomic # 8 Polarization: -111.22 SS G_CDS: -4.38 Total: -115.61 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 109.60 SS G_CDS: -1.67 Total: 107.93 kcal Total: -81.12 -2.40 -83.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049238934.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.088 kcal (2) G-P(sol) polarization free energy of solvation -81.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds