Wall clock time and date at job start Tue Mar 31 2020 20:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00227 * 2 1 4 4 H 1.48501 * 109.47143 * 272.20961 * 3 2 1 5 5 H 1.48505 * 109.47089 * 32.20871 * 3 2 1 6 6 H 1.48498 * 109.47263 * 152.20688 * 3 2 1 7 7 C 1.38820 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00035 * 345.01014 * 7 2 1 9 9 N 1.36934 * 119.99804 * 165.01094 * 7 2 1 10 10 C 1.46495 * 120.00119 * 124.36371 * 9 7 2 11 11 N 1.46503 * 109.46901 * 89.99858 * 10 9 7 12 12 N 1.40267 * 126.63778 * 269.95838 * 11 10 9 13 13 C 1.29205 * 107.88938 * 180.02562 * 12 11 10 14 14 C 1.50703 * 125.34585 * 180.26923 * 13 12 11 15 15 C 1.50706 * 109.46988 * 89.71435 * 14 13 12 16 16 C 1.33394 * 125.19839 * 89.71965 * 15 14 13 17 17 C 1.38428 * 114.91393 * 179.85638 * 16 15 14 18 18 C 1.33381 * 114.92073 * 0.42899 * 17 16 15 19 19 S 1.75874 * 125.20358 * 270.02079 * 15 14 13 20 20 O 1.34761 * 109.30339 * 0.02562 * 13 12 11 21 21 C 1.34408 * 108.84104 * 0.02562 * 20 13 12 22 22 S 1.71201 * 126.38423 * 179.97438 * 21 20 13 23 23 C 1.46497 * 120.00154 * 304.36803 * 9 7 2 24 24 C 1.52998 * 117.49853 * 3.06633 * 23 9 7 25 25 C 1.52997 * 60.00042 * 252.51098 * 24 23 9 26 26 H 0.96996 * 119.99491 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47231 * 330.00210 * 10 9 7 28 28 H 1.09005 * 109.47740 * 210.00134 * 10 9 7 29 29 H 1.08997 * 109.46863 * 209.71321 * 14 13 12 30 30 H 1.09001 * 109.47298 * 329.71569 * 14 13 12 31 31 H 1.07994 * 122.53989 * 0.02562 * 16 15 14 32 32 H 1.07998 * 122.53743 * 180.20054 * 17 16 15 33 33 H 1.08009 * 125.20277 * 179.78628 * 18 17 16 34 34 H 1.09002 * 115.55174 * 148.77527 * 23 9 7 35 35 H 1.08995 * 117.49965 * 0.02562 * 24 23 9 36 36 H 1.09008 * 117.50076 * 145.02084 * 24 23 9 37 37 H 1.09000 * 117.50096 * 252.50921 * 25 24 23 38 38 H 1.09000 * 117.51654 * 107.48545 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4511 2.0733 -1.3990 5 1 1.4719 2.6387 0.7463 6 1 3.5704 1.4271 0.6528 7 6 2.0103 -1.2022 -0.0005 8 1 1.4979 -2.1217 0.2410 9 7 3.3447 -1.2223 -0.3073 10 6 4.3036 -1.8080 0.6326 11 7 4.4654 -3.2343 0.3397 12 7 3.7173 -4.2902 0.8810 13 6 4.1629 -5.3925 0.3753 14 6 3.6340 -6.7696 0.6835 15 6 2.5260 -7.1094 -0.2799 16 6 2.6899 -7.7112 -1.4590 17 6 1.5229 -7.9239 -2.1724 18 6 0.4124 -7.4869 -1.5766 19 16 0.8200 -6.7663 -0.0248 20 8 5.1713 -5.1168 -0.4751 21 6 5.3651 -3.7871 -0.5022 22 16 6.5338 -2.9498 -1.4317 23 6 3.8134 -0.6578 -1.5753 24 6 2.7731 0.0035 -2.4816 25 6 3.3700 -1.3523 -2.8645 26 1 -0.4849 0.8401 0.0004 27 1 3.9351 -1.6859 1.6511 28 1 5.2653 -1.3050 0.5315 29 1 4.4383 -7.4983 0.5838 30 1 3.2484 -6.7910 1.7028 31 1 3.6593 -8.0122 -1.8277 32 1 1.5127 -8.4040 -3.1398 33 1 -0.5847 -7.5638 -1.9847 34 1 4.8130 -0.2236 -1.5557 35 1 1.7401 0.0189 -2.1343 36 1 3.0882 0.8731 -3.0584 37 1 4.0778 -1.3747 -3.6931 38 1 2.7299 -2.2293 -2.7692 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066793237.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:32 Heat of formation + Delta-G solvation = 149.075696 kcal Electronic energy + Delta-G solvation = -24692.340051 eV Core-core repulsion = 21178.878798 eV Total energy + Delta-G solvation = -3513.461252 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.33105 -38.12095 -37.72897 -35.99005 -34.35084 -33.00537 -32.02304 -30.65267 -27.52101 -26.57065 -24.51254 -23.74029 -22.95844 -22.01131 -21.64164 -20.13949 -19.41590 -18.39209 -17.69855 -17.14467 -17.03941 -16.68846 -15.68471 -15.52551 -15.23825 -14.96385 -14.68368 -13.82512 -13.66917 -13.33494 -13.25312 -12.81165 -12.68353 -12.62980 -12.20268 -12.04370 -11.75929 -11.69853 -11.44619 -11.28767 -10.92447 -10.84617 -10.80273 -10.61753 -10.48270 -10.02231 -9.69624 -9.25581 -8.91961 -8.68393 -8.53183 -7.64285 -7.46242 -7.05213 -6.29335 -4.04919 0.73044 1.09335 1.42268 1.46066 1.62698 1.89619 2.31724 2.63566 2.99749 3.25581 3.34710 3.39382 4.01172 4.29224 4.39738 4.50851 4.72075 4.76825 4.86050 4.96386 5.04052 5.09319 5.31451 5.42735 5.47367 5.73167 5.84654 5.88458 5.92224 5.95900 6.04269 6.11245 6.30365 6.47079 6.51162 6.53141 6.90122 7.18131 7.39005 7.80120 8.15108 8.60491 9.30140 9.65692 10.79018 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.011322 B = 0.004800 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.391707 B = 5832.529543 C = 7093.539709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.070 3.930 3 Si 0.885 3.115 4 H -0.265 1.265 5 H -0.299 1.299 6 H -0.267 1.267 7 C -0.310 4.310 8 H 0.079 0.921 9 N -0.530 5.530 10 C 0.352 3.648 11 N -0.361 5.361 12 N -0.248 5.248 13 C 0.214 3.786 14 C 0.052 3.948 15 C -0.205 4.205 16 C -0.114 4.114 17 C -0.142 4.142 18 C -0.207 4.207 19 S 0.144 5.856 20 O -0.223 6.223 21 C 0.417 3.583 22 S -0.516 6.516 23 C 0.097 3.903 24 C -0.194 4.194 25 C -0.192 4.192 26 H 0.270 0.730 27 H 0.111 0.889 28 H 0.107 0.893 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.142 0.858 32 H 0.141 0.859 33 H 0.166 0.834 34 H 0.103 0.897 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.598 -14.520 1.286 15.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.136 4.136 3 Si 0.712 3.288 4 H -0.190 1.190 5 H -0.227 1.227 6 H -0.192 1.192 7 C -0.439 4.439 8 H 0.097 0.903 9 N -0.246 5.246 10 C 0.146 3.854 11 N -0.168 5.168 12 N -0.075 5.075 13 C -0.015 4.015 14 C 0.011 3.989 15 C -0.324 4.324 16 C -0.146 4.146 17 C -0.173 4.173 18 C -0.343 4.343 19 S 0.410 5.590 20 O -0.113 6.113 21 C 0.117 3.883 22 S -0.387 6.387 23 C -0.009 4.009 24 C -0.231 4.231 25 C -0.232 4.232 26 H 0.080 0.920 27 H 0.129 0.871 28 H 0.125 0.875 29 H 0.140 0.860 30 H 0.141 0.859 31 H 0.160 0.840 32 H 0.159 0.841 33 H 0.183 0.817 34 H 0.121 0.879 35 H 0.137 0.863 36 H 0.098 0.902 37 H 0.098 0.902 38 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.620 -12.658 2.473 13.161 hybrid contribution 0.766 -0.494 -1.435 1.700 sum 3.386 -13.152 1.037 13.620 Atomic orbital electron populations 1.69849 1.06327 1.27730 1.47766 1.25717 0.95007 0.98781 0.94113 0.86791 0.80233 0.82909 0.78830 1.19019 1.22650 1.19165 1.18632 0.82246 0.94195 1.48784 0.90349 1.44303 1.04887 1.61627 1.13774 1.21922 0.96196 0.71899 0.95334 1.54126 1.22339 1.09225 1.31133 1.77397 1.16337 0.93568 1.20219 1.26811 0.87224 0.97988 0.89521 1.18577 0.95472 0.85660 0.99231 1.24038 0.97711 1.09547 1.01087 1.20189 1.00132 1.00781 0.93516 1.20128 0.91393 1.03910 1.01848 1.25796 1.03234 1.05736 0.99564 1.84669 0.99095 1.57321 1.17945 1.85314 1.46290 1.24921 1.54754 1.27508 0.91560 0.80616 0.88646 1.93247 1.33860 1.62228 1.49375 1.21629 0.95794 1.00560 0.82919 1.23542 1.01367 0.95040 1.03189 1.23150 1.03751 0.96193 1.00111 0.91976 0.87125 0.87527 0.86013 0.85858 0.83992 0.84143 0.81690 0.87888 0.86321 0.90160 0.90249 0.89991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.69 13.97 55.49 0.78 -23.92 16 2 C 0.07 1.83 3.75 -17.43 -0.07 1.76 16 3 Si 0.89 20.61 24.84 -169.99 -4.22 16.38 16 4 H -0.26 -5.96 5.80 56.52 0.33 -5.63 16 5 H -0.30 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.31 -8.01 9.17 -15.06 -0.14 -8.15 16 8 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 9 N -0.53 -11.87 2.29 -169.35 -0.39 -12.26 16 10 C 0.35 6.81 6.85 -63.75 -0.44 6.38 16 11 N -0.36 -6.79 3.88 -65.26 -0.25 -7.04 16 12 N -0.25 -4.30 12.55 32.46 0.41 -3.90 16 13 C 0.21 3.11 7.60 -13.38 -0.10 3.01 16 14 C 0.05 0.50 6.34 -29.03 -0.18 0.32 16 15 C -0.21 -2.32 5.75 -36.00 -0.21 -2.52 16 16 C -0.11 -1.23 10.05 -41.20 -0.41 -1.64 16 17 C -0.14 -1.49 10.18 -41.21 -0.42 -1.91 16 18 C -0.21 -2.26 11.23 29.04 0.33 -1.93 16 19 S 0.14 1.76 23.33 -107.50 -2.51 -0.74 16 20 O -0.22 -3.73 10.72 4.16 0.04 -3.68 16 21 C 0.42 7.89 8.39 54.17 0.45 8.35 16 22 S -0.52 -10.51 30.48 -107.50 -3.28 -13.78 16 23 C 0.10 2.08 5.15 -67.93 -0.35 1.73 16 24 C -0.19 -4.21 6.68 -26.73 -0.18 -4.39 16 25 C -0.19 -4.06 10.36 -26.73 -0.28 -4.34 16 26 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 27 H 0.11 2.05 8.04 -51.93 -0.42 1.63 16 28 H 0.11 1.92 7.66 -51.93 -0.40 1.52 16 29 H 0.12 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.12 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.17 1.45 8.06 -52.48 -0.42 1.03 16 34 H 0.10 2.12 8.14 -51.93 -0.42 1.69 16 35 H 0.12 2.94 5.08 -51.93 -0.26 2.67 16 36 H 0.08 1.59 7.86 -51.92 -0.41 1.19 16 37 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 38 H 0.08 1.90 8.14 -51.93 -0.42 1.48 16 LS Contribution 353.44 15.07 5.33 5.33 Total: -1.00 -30.85 353.44 -10.59 -41.44 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -4.50 Total: 5.52 kcal Atomic # 6 Polarization: -1.36 SS G_CDS: -1.99 Total: -3.35 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.54 Total: -47.11 kcal Atomic # 8 Polarization: -3.73 SS G_CDS: 0.04 Total: -3.68 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.22 Total: 16.38 kcal Atomic # 16 Polarization: -8.74 SS G_CDS: -5.78 Total: -14.53 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.85 -10.59 -41.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066793237.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.513 kcal (2) G-P(sol) polarization free energy of solvation -30.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 149.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds