Wall clock time and date at job start Tue Mar 31 2020 20:36:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86797 * 120.00227 * 2 1 4 4 H 1.48501 * 109.47143 * 272.20961 * 3 2 1 5 5 H 1.48505 * 109.47089 * 32.20871 * 3 2 1 6 6 H 1.48498 * 109.47263 * 152.20688 * 3 2 1 7 7 C 1.38820 * 119.99853 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00035 * 345.01014 * 7 2 1 9 9 N 1.36934 * 119.99804 * 165.01094 * 7 2 1 10 10 C 1.46495 * 120.00119 * 124.36371 * 9 7 2 11 11 N 1.46503 * 109.46901 * 89.99858 * 10 9 7 12 12 N 1.40267 * 126.63778 * 269.95838 * 11 10 9 13 13 C 1.29205 * 107.88938 * 180.02562 * 12 11 10 14 14 C 1.50703 * 125.34585 * 180.26923 * 13 12 11 15 15 C 1.50706 * 109.46988 * 89.71435 * 14 13 12 16 16 C 1.33394 * 125.19839 * 89.71965 * 15 14 13 17 17 C 1.38428 * 114.91393 * 179.85638 * 16 15 14 18 18 C 1.33381 * 114.92073 * 0.42899 * 17 16 15 19 19 S 1.75874 * 125.20358 * 270.02079 * 15 14 13 20 20 O 1.34761 * 109.30339 * 0.02562 * 13 12 11 21 21 C 1.34408 * 108.84104 * 0.02562 * 20 13 12 22 22 S 1.71201 * 126.38423 * 179.97438 * 21 20 13 23 23 C 1.46497 * 120.00154 * 304.36803 * 9 7 2 24 24 C 1.52998 * 117.49853 * 3.06633 * 23 9 7 25 25 C 1.52997 * 60.00042 * 252.51098 * 24 23 9 26 26 H 0.96996 * 119.99491 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.47231 * 330.00210 * 10 9 7 28 28 H 1.09005 * 109.47740 * 210.00134 * 10 9 7 29 29 H 1.08997 * 109.46863 * 209.71321 * 14 13 12 30 30 H 1.09001 * 109.47298 * 329.71569 * 14 13 12 31 31 H 1.07994 * 122.53989 * 0.02562 * 16 15 14 32 32 H 1.07998 * 122.53743 * 180.20054 * 17 16 15 33 33 H 1.08009 * 125.20277 * 179.78628 * 18 17 16 34 34 H 1.09002 * 115.55174 * 148.77527 * 23 9 7 35 35 H 1.08995 * 117.49965 * 0.02562 * 24 23 9 36 36 H 1.09008 * 117.50076 * 145.02084 * 24 23 9 37 37 H 1.09000 * 117.50096 * 252.50921 * 25 24 23 38 38 H 1.09000 * 117.51654 * 107.48545 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4511 2.0733 -1.3990 5 1 1.4719 2.6387 0.7463 6 1 3.5704 1.4271 0.6528 7 6 2.0103 -1.2022 -0.0005 8 1 1.4979 -2.1217 0.2410 9 7 3.3447 -1.2223 -0.3073 10 6 4.3036 -1.8080 0.6326 11 7 4.4654 -3.2343 0.3397 12 7 3.7173 -4.2902 0.8810 13 6 4.1629 -5.3925 0.3753 14 6 3.6340 -6.7696 0.6835 15 6 2.5260 -7.1094 -0.2799 16 6 2.6899 -7.7112 -1.4590 17 6 1.5229 -7.9239 -2.1724 18 6 0.4124 -7.4869 -1.5766 19 16 0.8200 -6.7663 -0.0248 20 8 5.1713 -5.1168 -0.4751 21 6 5.3651 -3.7871 -0.5022 22 16 6.5338 -2.9498 -1.4317 23 6 3.8134 -0.6578 -1.5753 24 6 2.7731 0.0035 -2.4816 25 6 3.3700 -1.3523 -2.8645 26 1 -0.4849 0.8401 0.0004 27 1 3.9351 -1.6859 1.6511 28 1 5.2653 -1.3050 0.5315 29 1 4.4383 -7.4983 0.5838 30 1 3.2484 -6.7910 1.7028 31 1 3.6593 -8.0122 -1.8277 32 1 1.5127 -8.4040 -3.1398 33 1 -0.5847 -7.5638 -1.9847 34 1 4.8130 -0.2236 -1.5557 35 1 1.7401 0.0189 -2.1343 36 1 3.0882 0.8731 -3.0584 37 1 4.0778 -1.3747 -3.6931 38 1 2.7299 -2.2293 -2.7692 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066793237.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:32 Heat of formation + Delta-G solvation = 129.971689 kcal Electronic energy + Delta-G solvation = -24693.168463 eV Core-core repulsion = 21178.878798 eV Total energy + Delta-G solvation = -3514.289664 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.73737 -39.46464 -38.94146 -37.49542 -35.54512 -34.76363 -33.69959 -32.00046 -28.78695 -27.89550 -26.27611 -24.74350 -24.50376 -23.37724 -23.18333 -21.92908 -20.28163 -19.85870 -18.99266 -18.80045 -18.48782 -17.97411 -17.12162 -16.79489 -16.69333 -16.38277 -16.05558 -15.53239 -15.08904 -14.49820 -14.45665 -14.20968 -13.87465 -13.67441 -13.53483 -13.38666 -13.28428 -13.17743 -12.83475 -12.66713 -12.61429 -12.50555 -12.25809 -12.06279 -11.88742 -11.66602 -11.51428 -11.01169 -10.62868 -9.79735 -9.47224 -9.23103 -9.03119 -8.85447 -8.31322 -6.08993 -0.42149 -0.18414 -0.04770 0.34121 0.64387 1.00289 1.02769 1.42301 1.45506 1.52698 1.56675 1.83224 2.37800 2.74193 2.81088 2.92530 3.25046 3.44511 3.55303 3.96902 4.04238 4.14304 4.17886 4.19972 4.27028 4.28667 4.39358 4.51534 4.64025 4.67768 4.80342 4.85493 4.96765 5.09299 5.14551 5.26679 5.40909 5.49567 5.81081 6.03305 6.13602 6.72601 7.30097 7.72752 8.80561 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.011322 B = 0.004800 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.391707 B = 5832.529543 C = 7093.539709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.031 3.969 3 Si 0.939 3.061 4 H -0.250 1.250 5 H -0.308 1.308 6 H -0.253 1.253 7 C -0.296 4.296 8 H 0.030 0.970 9 N -0.544 5.544 10 C 0.358 3.642 11 N -0.366 5.366 12 N -0.281 5.281 13 C 0.238 3.762 14 C 0.052 3.948 15 C -0.210 4.210 16 C -0.114 4.114 17 C -0.147 4.147 18 C -0.210 4.210 19 S 0.082 5.918 20 O -0.219 6.219 21 C 0.421 3.579 22 S -0.545 6.545 23 C 0.098 3.902 24 C -0.197 4.197 25 C -0.183 4.183 26 H 0.270 0.730 27 H 0.115 0.885 28 H 0.126 0.874 29 H 0.165 0.835 30 H 0.145 0.855 31 H 0.165 0.835 32 H 0.165 0.835 33 H 0.181 0.819 34 H 0.123 0.877 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.101 0.899 38 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.809 -15.368 0.708 16.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.171 4.171 3 Si 0.764 3.236 4 H -0.174 1.174 5 H -0.236 1.236 6 H -0.177 1.177 7 C -0.425 4.425 8 H 0.047 0.953 9 N -0.261 5.261 10 C 0.153 3.847 11 N -0.171 5.171 12 N -0.107 5.107 13 C 0.010 3.990 14 C 0.011 3.989 15 C -0.329 4.329 16 C -0.146 4.146 17 C -0.177 4.177 18 C -0.345 4.345 19 S 0.347 5.653 20 O -0.108 6.108 21 C 0.118 3.882 22 S -0.416 6.416 23 C -0.008 4.008 24 C -0.234 4.234 25 C -0.223 4.223 26 H 0.080 0.920 27 H 0.133 0.867 28 H 0.143 0.857 29 H 0.183 0.817 30 H 0.162 0.838 31 H 0.183 0.817 32 H 0.183 0.817 33 H 0.199 0.801 34 H 0.141 0.859 35 H 0.105 0.895 36 H 0.124 0.876 37 H 0.119 0.881 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.850 -13.553 1.907 14.521 hybrid contribution 0.035 -0.521 -1.274 1.377 sum 4.886 -14.074 0.633 14.912 Atomic orbital electron populations 1.69962 1.08076 1.28433 1.50198 1.26270 0.95325 1.01724 0.93749 0.85926 0.79335 0.78800 0.79537 1.17400 1.23601 1.17665 1.18193 0.83773 0.92351 1.48197 0.95265 1.44240 1.03957 1.63063 1.14864 1.22027 0.96310 0.71392 0.94989 1.53529 1.22564 1.09680 1.31366 1.77459 1.17320 0.93993 1.21972 1.27883 0.85130 0.99039 0.86967 1.19070 0.96270 0.83605 0.99934 1.24144 0.96742 1.10134 1.01866 1.20567 1.01220 0.99760 0.93030 1.20505 0.91078 1.03379 1.02706 1.26049 1.04458 1.05492 0.98545 1.84903 1.01501 1.58818 1.20055 1.85326 1.46790 1.23655 1.54995 1.27255 0.91176 0.81412 0.88343 1.93257 1.34770 1.63135 1.50451 1.21776 0.96288 1.00327 0.82366 1.23474 0.99785 0.96264 1.03916 1.23031 1.03495 0.94777 1.01005 0.92037 0.86715 0.85657 0.81698 0.83752 0.81709 0.81744 0.80148 0.85943 0.89516 0.87628 0.88112 0.92920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.93 13.97 21.65 0.30 -53.63 16 2 C 0.03 1.65 3.75 84.86 0.32 1.97 16 3 Si 0.94 42.11 24.84 68.60 1.70 43.82 16 4 H -0.25 -10.50 5.80 99.48 0.58 -9.92 16 5 H -0.31 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.25 -10.68 7.11 99.48 0.71 -9.98 16 7 C -0.30 -15.68 9.17 84.04 0.77 -14.91 16 8 H 0.03 1.82 8.06 -2.91 -0.02 1.80 16 9 N -0.54 -24.11 2.29 -689.70 -1.58 -25.69 16 10 C 0.36 13.49 6.85 170.96 1.17 14.67 16 11 N -0.37 -13.42 3.88 -472.46 -1.83 -15.25 16 12 N -0.28 -9.55 12.55 -166.08 -2.08 -11.63 16 13 C 0.24 6.45 7.60 88.50 0.67 7.13 16 14 C 0.05 0.85 6.34 29.10 0.18 1.04 16 15 C -0.21 -4.37 5.75 24.59 0.14 -4.23 16 16 C -0.11 -2.16 10.05 21.22 0.21 -1.94 16 17 C -0.15 -2.77 10.18 21.22 0.22 -2.56 16 18 C -0.21 -4.42 11.23 66.72 0.75 -3.67 16 19 S 0.08 2.03 23.33 -56.49 -1.32 0.71 16 20 O -0.22 -6.81 10.72 -8.03 -0.09 -6.90 16 21 C 0.42 15.24 8.39 129.75 1.09 16.32 16 22 S -0.54 -21.19 30.48 -56.49 -1.72 -22.91 16 23 C 0.10 4.06 5.15 44.99 0.23 4.29 16 24 C -0.20 -8.30 6.68 30.59 0.20 -8.09 16 25 C -0.18 -7.56 10.36 30.59 0.32 -7.24 16 26 H 0.27 14.86 8.31 -92.71 -0.77 14.09 16 27 H 0.12 4.18 8.04 -2.39 -0.02 4.17 16 28 H 0.13 4.24 7.66 -2.38 -0.02 4.23 16 29 H 0.17 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.17 2.33 8.06 -2.91 -0.02 2.31 16 32 H 0.17 2.27 8.06 -2.91 -0.02 2.24 16 33 H 0.18 3.06 8.06 -2.91 -0.02 3.03 16 34 H 0.12 4.65 8.14 -2.39 -0.02 4.63 16 35 H 0.09 4.31 5.08 -2.39 -0.01 4.30 16 36 H 0.11 3.90 7.86 -2.38 -0.02 3.88 16 37 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 38 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -68.69 353.44 0.62 -68.07 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: 0.96 Total: 20.64 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 6.28 Total: 2.77 kcal Atomic # 7 Polarization: -101.01 SS G_CDS: -5.19 Total: -106.20 kcal Atomic # 8 Polarization: -6.81 SS G_CDS: -0.09 Total: -6.90 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 1.70 Total: 43.82 kcal Atomic # 16 Polarization: -19.16 SS G_CDS: -3.04 Total: -22.20 kcal Total: -68.69 0.62 -68.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066793237.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.042 kcal (2) G-P(sol) polarization free energy of solvation -68.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds