Wall clock time and date at job start Tue Mar 31 2020 20:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30826 * 1 3 3 Si 1.86802 * 120.00203 * 2 1 4 4 H 1.48500 * 109.47159 * 274.67977 * 3 2 1 5 5 H 1.48499 * 109.47060 * 34.68152 * 3 2 1 6 6 H 1.48495 * 109.47158 * 154.68027 * 3 2 1 7 7 C 1.39949 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99952 * 162.64311 * 7 2 1 9 9 C 1.41402 * 119.99707 * 342.64816 * 7 2 1 10 10 C 1.40709 * 120.24510 * 334.38452 * 9 7 2 11 11 C 1.37619 * 119.74704 * 180.23406 * 10 9 7 12 12 C 1.38634 * 120.24292 * 359.51971 * 11 10 9 13 13 S 1.76198 * 119.74631 * 180.27732 * 12 11 10 14 14 O 1.42104 * 106.40178 * 203.54023 * 13 12 11 15 15 O 1.42104 * 106.40188 * 336.46069 * 13 12 11 16 16 N 1.65596 * 107.21879 * 89.99851 * 13 12 11 17 17 C 1.40113 * 120.00178 * 60.40333 * 16 13 12 18 18 C 1.38775 * 120.02503 * 35.55299 * 17 16 13 19 19 C 1.38159 * 120.00786 * 179.74607 * 18 17 16 20 20 C 1.38698 * 120.05076 * 0.51237 * 19 18 17 21 21 O 1.35990 * 119.97562 * 179.74503 * 20 19 18 22 22 C 1.38700 * 120.04805 * 359.76399 * 20 19 18 23 23 C 1.38275 * 119.99759 * 359.97438 * 22 20 19 24 24 F 1.35100 * 120.02722 * 179.97438 * 23 22 20 25 25 C 1.38633 * 120.50414 * 0.25423 * 12 11 10 26 26 C 1.37613 * 120.24673 * 359.97438 * 25 12 11 27 27 H 0.96999 * 119.99236 * 0.02562 * 1 2 3 28 28 H 1.08007 * 120.12983 * 0.03173 * 10 9 7 29 29 H 1.07995 * 119.87390 * 179.79399 * 11 10 9 30 30 H 0.96999 * 120.00169 * 240.40168 * 16 13 12 31 31 H 1.08009 * 119.99988 * 0.02562 * 18 17 16 32 32 H 1.07998 * 119.97705 * 180.25543 * 19 18 17 33 33 H 0.96701 * 114.00319 * 270.02205 * 21 20 19 34 34 H 1.08006 * 119.99796 * 180.02562 * 22 20 19 35 35 H 1.07996 * 119.87523 * 179.97438 * 25 12 11 36 36 H 1.08007 * 120.12962 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3909 2.1035 -1.3954 5 1 1.4928 2.6221 0.7967 6 1 3.5858 1.4136 0.5987 7 6 2.0080 -1.2120 0.0005 8 1 3.0511 -1.2334 -0.2785 9 6 1.3492 -2.4085 0.3663 10 6 0.2271 -2.3690 1.2144 11 6 -0.4033 -3.5402 1.5677 12 6 0.0573 -4.7548 1.0833 13 16 -0.7643 -6.2456 1.5382 14 8 0.1871 -7.2903 1.3869 15 8 -1.4354 -5.9767 2.7616 16 7 -1.9435 -6.5198 0.4085 17 6 -1.5974 -6.6902 -0.9385 18 6 -0.4210 -7.3446 -1.2757 19 6 -0.0826 -7.5170 -2.6041 20 6 -0.9126 -7.0271 -3.6015 21 8 -0.5754 -7.1931 -4.9084 22 6 -2.0860 -6.3677 -3.2669 23 6 -2.4293 -6.1988 -1.9381 24 9 -3.5719 -5.5561 -1.6115 25 6 1.1590 -4.8052 0.2433 26 6 1.8078 -3.6470 -0.1193 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1361 -1.4235 1.5893 29 1 -1.2627 -3.5126 2.2212 30 1 -2.8740 -6.5626 0.6792 31 1 0.2279 -7.7232 -0.4997 32 1 0.8310 -8.0300 -2.8660 33 1 -0.0419 -6.4730 -5.2716 34 1 -2.7319 -5.9869 -4.0442 35 1 1.5094 -5.7569 -0.1278 36 1 2.6657 -3.6884 -0.7742 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092131236.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:04:42 Heat of formation + Delta-G solvation = -120.783881 kcal Electronic energy + Delta-G solvation = -26626.051102 eV Core-core repulsion = 22502.381933 eV Total energy + Delta-G solvation = -4123.669169 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.062 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -48.82055 -39.72408 -37.67513 -37.35558 -36.60384 -35.38683 -34.15413 -34.11254 -30.69154 -30.34479 -29.55637 -28.10829 -25.91168 -23.22635 -22.45492 -21.61654 -21.23806 -19.19092 -18.77127 -17.97724 -17.68857 -17.40076 -16.72208 -16.50636 -15.94357 -15.54321 -15.52397 -15.00389 -14.82660 -14.21269 -13.97651 -13.83849 -13.54059 -13.32386 -12.94273 -12.50412 -12.46364 -12.32679 -12.15426 -11.89778 -11.66211 -11.58771 -11.40384 -11.32467 -11.27940 -10.98596 -10.82837 -10.52209 -10.45624 -9.82462 -9.60955 -9.57727 -8.92329 -8.10770 -8.02405 -7.78317 -7.21588 -4.88120 0.81559 1.12627 1.19694 2.15146 2.81929 2.84459 2.86693 2.91627 3.37166 3.40416 3.61081 3.95657 4.11771 4.28358 4.39413 4.79140 4.90111 4.96694 5.11175 5.30166 5.39817 5.71972 5.95591 6.00070 6.03376 6.04901 6.13840 6.36678 6.59717 6.61876 6.66085 6.81736 6.95193 7.05881 7.26179 7.33582 7.53355 7.54223 7.69020 7.88494 8.23885 8.43071 8.56516 9.70014 Molecular weight = 337.06amu Principal moments of inertia in cm(-1) A = 0.011435 B = 0.004330 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.112867 B = 6464.961783 C = 7565.000690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.763 5.763 2 C 0.071 3.929 3 Si 0.917 3.083 4 H -0.266 1.266 5 H -0.271 1.271 6 H -0.256 1.256 7 C -0.431 4.431 8 H 0.089 0.911 9 C 0.141 3.859 10 C -0.180 4.180 11 C -0.014 4.014 12 C -0.785 4.785 13 S 2.683 3.317 14 O -0.975 6.975 15 O -0.971 6.971 16 N -1.060 6.060 17 C 0.140 3.860 18 C -0.129 4.129 19 C -0.121 4.121 20 C 0.110 3.890 21 O -0.496 6.496 22 C -0.159 4.159 23 C 0.093 3.907 24 F -0.132 7.132 25 C 0.004 3.996 26 C -0.236 4.236 27 H 0.290 0.710 28 H 0.122 0.878 29 H 0.104 0.896 30 H 0.422 0.578 31 H 0.176 0.824 32 H 0.141 0.859 33 H 0.393 0.607 34 H 0.143 0.857 35 H 0.105 0.895 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.098 -6.787 -6.116 9.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.151 4.151 3 Si 0.740 3.260 4 H -0.191 1.191 5 H -0.195 1.195 6 H -0.179 1.179 7 C -0.458 4.458 8 H 0.107 0.893 9 C 0.137 3.863 10 C -0.200 4.200 11 C -0.034 4.034 12 C -0.882 4.882 13 S 2.785 3.215 14 O -0.965 6.965 15 O -0.962 6.962 16 N -0.805 5.805 17 C 0.041 3.959 18 C -0.150 4.150 19 C -0.140 4.140 20 C 0.064 3.936 21 O -0.307 6.307 22 C -0.179 4.179 23 C 0.070 3.930 24 F -0.111 7.111 25 C -0.016 4.016 26 C -0.256 4.256 27 H 0.101 0.899 28 H 0.140 0.860 29 H 0.122 0.878 30 H 0.257 0.743 31 H 0.193 0.807 32 H 0.159 0.841 33 H 0.249 0.751 34 H 0.160 0.840 35 H 0.123 0.877 36 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.400 -7.723 -5.278 9.657 hybrid contribution -0.122 2.072 -0.458 2.125 sum -2.523 -5.651 -5.737 8.438 Atomic orbital electron populations 1.69816 1.07960 1.30520 1.30217 1.26159 0.94912 1.02218 0.91837 0.86130 0.80813 0.79514 0.79532 1.19062 1.19530 1.17924 1.19974 0.98332 0.91094 1.36433 0.89291 1.17869 0.89893 0.92213 0.86353 1.21300 1.00164 0.96703 1.01867 1.20239 0.96638 0.91624 0.94937 1.28884 1.16838 1.15363 1.27150 1.01709 0.72535 0.75097 0.72139 1.93409 1.61053 1.56308 1.85749 1.93520 1.74930 1.86603 1.41156 1.53826 1.24289 1.85673 1.16675 1.17418 0.96256 0.99011 0.83167 1.21810 0.96698 0.97897 0.98605 1.21309 1.00178 1.01108 0.91444 1.18048 0.93289 0.98308 0.83915 1.84821 1.74486 1.49275 1.22099 1.21201 0.99562 1.02461 0.94678 1.17283 0.85390 0.98058 0.92309 1.91493 1.47107 1.79171 1.93287 1.20176 0.92059 0.97333 0.92035 1.21041 1.04610 0.92683 1.07288 0.89867 0.86017 0.87829 0.74319 0.80693 0.84137 0.75096 0.83959 0.87688 0.88057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.76 11.01 55.55 0.61 -17.15 16 2 C 0.07 1.60 5.14 -17.34 -0.09 1.51 16 3 Si 0.92 16.54 29.59 -169.99 -5.03 11.51 16 4 H -0.27 -4.72 7.11 56.52 0.40 -4.32 16 5 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 6 H -0.26 -4.59 7.11 56.52 0.40 -4.19 16 7 C -0.43 -10.24 9.05 -37.74 -0.34 -10.58 16 8 H 0.09 1.99 7.90 -52.49 -0.41 1.57 16 9 C 0.14 3.45 5.56 -106.83 -0.59 2.86 16 10 C -0.18 -4.41 8.69 -38.87 -0.34 -4.75 16 11 C -0.01 -0.32 9.49 -39.66 -0.38 -0.70 16 12 C -0.78 -16.80 5.83 -39.29 -0.23 -17.03 16 13 S 2.68 50.18 5.52 -107.50 -0.59 49.59 16 14 O -0.97 -18.76 14.22 -57.17 -0.81 -19.57 16 15 O -0.97 -20.18 17.26 -57.17 -0.99 -21.16 16 16 N -1.06 -16.78 5.69 32.50 0.18 -16.60 16 17 C 0.14 2.19 6.26 -83.58 -0.52 1.67 16 18 C -0.13 -1.90 8.46 -39.41 -0.33 -2.24 16 19 C -0.12 -1.53 9.98 -39.44 -0.39 -1.93 16 20 C 0.11 1.37 6.70 -39.24 -0.26 1.10 16 21 O -0.50 -5.19 13.50 -19.71 -0.27 -5.46 16 22 C -0.16 -2.09 9.96 -39.40 -0.39 -2.49 16 23 C 0.09 1.40 7.31 -39.27 -0.29 1.12 16 24 F -0.13 -2.05 16.97 2.25 0.04 -2.02 16 25 C 0.00 0.09 9.31 -39.66 -0.37 -0.28 16 26 C -0.24 -5.33 9.80 -38.88 -0.38 -5.71 16 27 H 0.29 6.05 8.30 -40.82 -0.34 5.71 16 28 H 0.12 3.03 6.23 -52.48 -0.33 2.70 16 29 H 0.10 2.21 7.60 -52.49 -0.40 1.81 16 30 H 0.42 5.69 8.82 -34.47 -0.30 5.38 16 31 H 0.18 2.68 5.11 -52.48 -0.27 2.41 16 32 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 33 H 0.39 2.38 9.06 45.56 0.41 2.80 16 34 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 35 H 0.11 1.95 6.90 -52.49 -0.36 1.59 16 36 H 0.10 2.09 8.06 -52.48 -0.42 1.66 16 LS Contribution 330.70 15.07 4.98 4.98 Total: -1.00 -29.55 330.70 -8.85 -38.40 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -2.06 Total: 14.93 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: -4.91 Total: -37.43 kcal Atomic # 7 Polarization: -34.55 SS G_CDS: 0.80 Total: -33.75 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -2.07 Total: -46.20 kcal Atomic # 9 Polarization: -2.05 SS G_CDS: 0.04 Total: -2.02 kcal Atomic # 14 Polarization: 16.54 SS G_CDS: -5.03 Total: 11.51 kcal Atomic # 16 Polarization: 50.18 SS G_CDS: -0.59 Total: 49.59 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.55 -8.85 -38.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092131236.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.389 kcal (2) G-P(sol) polarization free energy of solvation -29.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds