Wall clock time and date at job start Tue Mar 31 2020 20:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46829 * 273.79461 * 3 2 1 5 5 N 1.46498 * 109.46888 * 183.95769 * 4 3 2 6 6 C 1.46506 * 119.99960 * 85.91210 * 5 4 3 7 7 C 1.50697 * 109.47396 * 85.00081 * 6 5 4 8 8 H 1.08008 * 119.99567 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00164 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99529 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00032 * 359.97438 * 9 7 6 12 12 H 1.48492 * 109.47145 * 90.00561 * 11 9 7 13 13 H 1.48504 * 109.46850 * 210.00667 * 11 9 7 14 14 H 1.48501 * 109.47206 * 330.00145 * 11 9 7 15 15 S 1.65600 * 120.00264 * 265.91485 * 5 4 3 16 16 O 1.42098 * 106.40034 * 17.30502 * 15 5 4 17 17 O 1.42094 * 106.40539 * 150.23158 * 15 5 4 18 18 C 1.76207 * 107.21634 * 263.77066 * 15 5 4 19 19 C 1.37969 * 120.05119 * 106.66258 * 18 15 5 20 20 C 1.38303 * 120.18077 * 179.74571 * 19 18 15 21 21 C 1.38605 * 120.27802 * 0.56081 * 20 19 18 22 22 F 1.35099 * 119.94996 * 179.72056 * 21 20 19 23 23 C 1.38163 * 120.09528 * 359.69563 * 21 20 19 24 24 C 1.39612 * 120.04993 * 286.94308 * 18 15 5 25 25 C 1.43203 * 120.13865 * 359.97438 * 24 18 15 26 26 N 7.39353 * 158.30248 * 248.38834 * 2 1 3 27 27 H 1.09000 * 109.46969 * 153.80123 * 3 2 1 28 28 H 1.08991 * 109.47127 * 33.79532 * 3 2 1 29 29 H 1.08997 * 109.47092 * 63.96080 * 4 3 2 30 30 H 1.09001 * 109.47011 * 303.95215 * 4 3 2 31 31 H 1.09005 * 109.47166 * 204.99989 * 6 5 4 32 32 H 1.09005 * 109.47186 * 324.99781 * 6 5 4 33 33 H 0.97005 * 119.99577 * 179.97438 * 10 9 7 34 34 H 1.08003 * 119.91501 * 0.02562 * 19 18 15 35 35 H 1.08003 * 119.86515 * 180.25661 * 20 19 18 36 36 H 1.07999 * 120.08550 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1181 -0.0946 1.4394 5 7 4.5799 0.0011 1.4468 6 6 5.2278 1.3148 1.4731 7 6 5.3335 1.7946 2.8977 8 1 4.9553 1.1822 3.7031 9 6 5.9119 3.0155 3.1730 10 7 6.0045 3.4338 4.4164 11 14 6.5652 4.0747 1.7800 12 1 5.4878 4.9741 1.2948 13 1 7.7062 4.8888 2.2705 14 1 7.0211 3.2033 0.6673 15 16 5.5000 -1.3756 1.4255 16 8 4.6424 -2.4247 0.9976 17 8 6.7093 -1.0397 0.7594 18 6 5.9351 -1.7380 3.0941 19 6 5.3326 -2.7903 3.7523 20 6 5.6759 -3.0804 5.0603 21 6 6.6184 -2.3097 5.7228 22 9 6.9446 -2.5955 7.0022 23 6 7.2251 -1.2500 5.0764 24 6 6.8858 -0.9571 3.7541 25 6 7.5104 0.1397 3.0776 26 7 8.0057 1.0068 2.5413 27 1 2.9710 0.9229 -0.4537 28 1 2.9717 -0.8531 -0.5716 29 1 2.8142 -1.0486 1.8701 30 1 2.6976 0.7205 2.0285 31 1 6.2256 1.2366 1.0411 32 1 4.6358 2.0236 0.8939 33 1 6.4117 4.2926 4.6101 34 1 4.5941 -3.3920 3.2433 35 1 5.2040 -3.9078 5.5693 36 1 7.9597 -0.6498 5.5926 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157638477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:10 Heat of formation + Delta-G solvation = -15.687875 kcal Electronic energy + Delta-G solvation = -27288.516937 eV Core-core repulsion = 23201.697824 eV Total energy + Delta-G solvation = -4086.819113 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.13841 -39.24507 -37.36111 -37.17871 -36.04584 -35.61578 -35.46957 -32.79220 -31.49425 -31.08911 -30.88988 -27.67492 -24.33906 -23.86449 -23.29832 -21.97714 -19.56817 -18.68615 -17.77675 -17.58183 -16.97430 -16.89876 -16.75262 -16.15789 -15.79724 -15.65950 -14.83118 -14.53943 -14.41277 -14.02931 -13.80097 -13.62664 -13.53915 -13.41417 -12.90392 -12.72789 -12.62663 -12.48414 -12.38025 -12.13577 -11.98519 -11.89340 -11.78188 -11.62604 -11.46004 -11.21422 -11.06933 -10.91622 -10.66119 -10.56077 -10.25228 -9.72870 -9.25693 -9.07182 -8.72277 -8.46144 -6.27930 -4.30051 0.35479 0.69743 0.89312 2.77884 2.87286 2.91387 3.14272 3.23113 3.31199 3.33291 3.38617 3.82326 3.86105 4.11190 4.19882 4.28434 4.31860 4.46906 4.74968 4.85682 4.97241 5.09003 5.14016 5.17181 5.38435 5.50201 5.52571 5.58041 5.82438 5.83324 5.96323 6.01001 6.18888 6.56428 6.64877 6.84131 7.03288 7.36989 7.62874 8.20504 8.24178 8.72600 9.33447 10.82705 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.008647 B = 0.006842 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3237.229856 B = 4091.151822 C = 5971.232354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C 0.221 3.779 3 C -0.053 4.053 4 C 0.134 3.866 5 N -0.973 5.973 6 C 0.204 3.796 7 C -0.560 4.560 8 H 0.083 0.917 9 C 0.094 3.906 10 N -0.883 5.883 11 Si 0.863 3.137 12 H -0.279 1.279 13 H -0.284 1.284 14 H -0.254 1.254 15 S 2.686 3.314 16 O -0.964 6.964 17 O -0.945 6.945 18 C -0.656 4.656 19 C 0.005 3.995 20 C -0.164 4.164 21 C 0.153 3.847 22 F -0.129 7.129 23 C -0.134 4.134 24 C 0.156 3.844 25 C 0.222 3.778 26 N -0.331 5.331 27 H 0.117 0.883 28 H 0.112 0.888 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.266 0.734 34 H 0.158 0.842 35 H 0.147 0.853 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.275 -12.181 -0.539 12.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.098 4.098 3 C -0.095 4.095 4 C 0.006 3.994 5 N -0.810 5.810 6 C 0.081 3.919 7 C -0.598 4.598 8 H 0.101 0.899 9 C -0.112 4.112 10 N -0.519 5.519 11 Si 0.689 3.311 12 H -0.205 1.205 13 H -0.210 1.210 14 H -0.178 1.178 15 S 2.775 3.225 16 O -0.954 6.954 17 O -0.934 6.934 18 C -0.744 4.744 19 C -0.014 4.014 20 C -0.184 4.184 21 C 0.134 3.866 22 F -0.107 7.107 23 C -0.156 4.156 24 C 0.152 3.848 25 C -0.095 4.095 26 N -0.006 5.006 27 H 0.135 0.865 28 H 0.130 0.870 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.073 0.927 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.175 0.825 35 H 0.165 0.835 36 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -0.856 -11.153 -1.909 11.348 hybrid contribution 0.601 0.649 0.924 1.278 sum -0.256 -10.505 -0.985 10.554 Atomic orbital electron populations 1.81197 1.13001 1.09514 1.08590 1.28989 0.94985 0.92664 0.93113 1.19884 0.81685 1.06520 1.01448 1.21020 0.80029 1.04485 0.93850 1.57219 1.13855 1.21845 1.88113 1.19930 0.94056 0.78915 0.99024 1.21340 1.41886 1.05179 0.91418 0.89944 1.24707 0.94253 0.97050 0.95188 1.69872 1.43045 1.20707 1.18266 0.87019 0.79069 0.81092 0.83887 1.20466 1.20955 1.17761 1.02197 0.73713 0.72694 0.73904 1.93540 1.66960 1.54986 1.79938 1.93619 1.45441 1.83425 1.70960 1.31295 1.08756 1.06290 1.28020 1.20714 0.94963 0.92720 0.92991 1.21334 0.99380 1.01827 0.95890 1.17639 0.95243 0.94723 0.79031 1.91549 1.91229 1.92685 1.35282 1.21221 1.02551 0.97785 0.94033 1.15016 0.90836 0.87713 0.91266 1.24524 0.95822 0.93577 0.95542 1.80823 1.07443 1.06704 1.05605 0.86530 0.86976 0.89647 0.88221 0.92707 0.94205 0.92390 0.82451 0.83476 0.82959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.80 18.54 42.15 0.78 -6.02 16 2 C 0.22 2.81 15.43 -20.76 -0.32 2.49 16 3 C -0.05 -0.58 6.03 -29.51 -0.18 -0.76 16 4 C 0.13 1.74 5.31 -4.04 -0.02 1.72 16 5 N -0.97 -15.77 2.77 -115.65 -0.32 -16.09 16 6 C 0.20 4.08 3.77 -5.19 -0.02 4.06 16 7 C -0.56 -13.10 6.55 -34.44 -0.23 -13.33 16 8 H 0.08 2.04 7.99 -52.48 -0.42 1.62 16 9 C 0.09 2.40 4.70 -17.82 -0.08 2.31 16 10 N -0.88 -24.19 13.96 55.43 0.77 -23.42 16 11 Si 0.86 20.35 26.64 -169.99 -4.53 15.82 16 12 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.25 -5.86 6.54 56.52 0.37 -5.49 16 15 S 2.69 43.05 5.24 -107.50 -0.56 42.49 16 16 O -0.96 -14.49 15.78 -57.17 -0.90 -15.39 16 17 O -0.94 -17.96 14.93 -57.17 -0.85 -18.81 16 18 C -0.66 -9.80 5.97 -39.17 -0.23 -10.03 16 19 C 0.01 0.06 9.53 -39.66 -0.38 -0.32 16 20 C -0.16 -1.73 10.02 -39.42 -0.39 -2.13 16 21 C 0.15 1.90 7.29 -39.47 -0.29 1.61 16 22 F -0.13 -1.56 17.26 2.25 0.04 -1.52 16 23 C -0.13 -1.91 9.73 -39.09 -0.38 -2.29 16 24 C 0.16 2.60 5.55 -106.94 -0.59 2.01 16 25 C 0.22 4.47 9.36 -22.55 -0.21 4.25 16 26 N -0.33 -7.43 14.72 41.74 0.61 -6.81 16 27 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.09 0.94 7.47 -51.93 -0.39 0.55 16 30 H 0.10 1.33 8.10 -51.93 -0.42 0.91 16 31 H 0.06 1.20 4.48 -51.93 -0.23 0.97 16 32 H 0.04 0.75 7.54 -51.93 -0.39 0.36 16 33 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 34 H 0.16 1.43 7.35 -52.48 -0.39 1.05 16 35 H 0.15 1.08 8.06 -52.48 -0.42 0.65 16 36 H 0.15 2.01 8.06 -52.49 -0.42 1.58 16 LS Contribution 333.49 15.07 5.03 5.03 Total: -1.00 -30.95 333.49 -6.36 -37.31 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -3.10 Total: -2.17 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: -3.33 Total: -10.41 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 1.85 Total: -52.33 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.76 Total: -34.21 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.53 Total: 15.82 kcal Atomic # 16 Polarization: 43.05 SS G_CDS: -0.56 Total: 42.49 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.95 -6.36 -37.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157638477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.619 kcal (2) G-P(sol) polarization free energy of solvation -30.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds