Wall clock time and date at job start Tue Mar 31 2020 20:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 C 1.53006 * 109.46829 * 273.79461 * 3 2 1 5 5 N 1.46498 * 109.46888 * 183.95769 * 4 3 2 6 6 C 1.46506 * 119.99960 * 85.91210 * 5 4 3 7 7 C 1.50697 * 109.47396 * 85.00081 * 6 5 4 8 8 H 1.08008 * 119.99567 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00164 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99529 * 180.02562 * 9 7 6 11 11 Si 1.86797 * 120.00032 * 359.97438 * 9 7 6 12 12 H 1.48492 * 109.47145 * 90.00561 * 11 9 7 13 13 H 1.48504 * 109.46850 * 210.00667 * 11 9 7 14 14 H 1.48501 * 109.47206 * 330.00145 * 11 9 7 15 15 S 1.65600 * 120.00264 * 265.91485 * 5 4 3 16 16 O 1.42098 * 106.40034 * 17.30502 * 15 5 4 17 17 O 1.42094 * 106.40539 * 150.23158 * 15 5 4 18 18 C 1.76207 * 107.21634 * 263.77066 * 15 5 4 19 19 C 1.37969 * 120.05119 * 106.66258 * 18 15 5 20 20 C 1.38303 * 120.18077 * 179.74571 * 19 18 15 21 21 C 1.38605 * 120.27802 * 0.56081 * 20 19 18 22 22 F 1.35099 * 119.94996 * 179.72056 * 21 20 19 23 23 C 1.38163 * 120.09528 * 359.69563 * 21 20 19 24 24 C 1.39612 * 120.04993 * 286.94308 * 18 15 5 25 25 C 1.43203 * 120.13865 * 359.97438 * 24 18 15 26 26 N 7.39353 * 158.30248 * 248.38834 * 2 1 3 27 27 H 1.09000 * 109.46969 * 153.80123 * 3 2 1 28 28 H 1.08991 * 109.47127 * 33.79532 * 3 2 1 29 29 H 1.08997 * 109.47092 * 63.96080 * 4 3 2 30 30 H 1.09001 * 109.47011 * 303.95215 * 4 3 2 31 31 H 1.09005 * 109.47166 * 204.99989 * 6 5 4 32 32 H 1.09005 * 109.47186 * 324.99781 * 6 5 4 33 33 H 0.97005 * 119.99577 * 179.97438 * 10 9 7 34 34 H 1.08003 * 119.91501 * 0.02562 * 19 18 15 35 35 H 1.08003 * 119.86515 * 180.25661 * 20 19 18 36 36 H 1.07999 * 120.08550 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1181 -0.0946 1.4394 5 7 4.5799 0.0011 1.4468 6 6 5.2278 1.3148 1.4731 7 6 5.3335 1.7946 2.8977 8 1 4.9553 1.1822 3.7031 9 6 5.9119 3.0155 3.1730 10 7 6.0045 3.4338 4.4164 11 14 6.5652 4.0747 1.7800 12 1 5.4878 4.9741 1.2948 13 1 7.7062 4.8888 2.2705 14 1 7.0211 3.2033 0.6673 15 16 5.5000 -1.3756 1.4255 16 8 4.6424 -2.4247 0.9976 17 8 6.7093 -1.0397 0.7594 18 6 5.9351 -1.7380 3.0941 19 6 5.3326 -2.7903 3.7523 20 6 5.6759 -3.0804 5.0603 21 6 6.6184 -2.3097 5.7228 22 9 6.9446 -2.5955 7.0022 23 6 7.2251 -1.2500 5.0764 24 6 6.8858 -0.9571 3.7541 25 6 7.5104 0.1397 3.0776 26 7 8.0057 1.0068 2.5413 27 1 2.9710 0.9229 -0.4537 28 1 2.9717 -0.8531 -0.5716 29 1 2.8142 -1.0486 1.8701 30 1 2.6976 0.7205 2.0285 31 1 6.2256 1.2366 1.0411 32 1 4.6358 2.0236 0.8939 33 1 6.4117 4.2926 4.6101 34 1 4.5941 -3.3920 3.2433 35 1 5.2040 -3.9078 5.5693 36 1 7.9597 -0.6498 5.5926 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157638477.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:09 Heat of formation + Delta-G solvation = -36.308990 kcal Electronic energy + Delta-G solvation = -27289.411136 eV Core-core repulsion = 23201.697824 eV Total energy + Delta-G solvation = -4087.713312 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.11170 -40.34348 -38.52706 -38.47938 -37.34504 -36.93106 -36.84427 -34.59341 -32.59044 -32.32044 -31.99546 -29.25713 -25.47042 -25.13803 -24.37814 -23.48210 -20.76497 -19.88188 -19.14224 -18.78901 -18.48847 -18.07660 -17.89296 -17.25670 -16.94682 -16.77697 -16.16683 -15.84359 -15.53075 -15.43884 -14.94601 -14.91459 -14.74018 -14.50958 -14.40598 -14.26322 -14.03898 -13.73988 -13.61432 -13.49711 -13.27404 -13.16829 -13.08779 -12.93162 -12.81124 -12.57941 -12.43857 -12.29921 -12.08636 -11.96736 -11.69841 -11.56854 -10.68865 -10.31690 -10.15405 -9.85548 -8.25658 -6.24616 -0.78876 -0.50533 -0.14689 1.29188 1.39121 1.48648 1.70503 1.81766 1.85985 1.87749 2.01390 2.38008 2.56310 2.64359 2.88081 3.12693 3.15047 3.19647 3.25906 3.74181 3.87712 3.93879 4.08093 4.17009 4.35491 4.45424 4.62448 4.63868 4.79743 4.87604 4.92247 4.96474 5.02220 5.15868 5.35689 5.51189 5.59739 5.69434 6.31605 6.64144 6.70149 6.80229 7.39952 8.87672 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.008647 B = 0.006842 C = 0.004688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3237.229856 B = 4091.151822 C = 5971.232354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.247 3.753 3 C -0.049 4.049 4 C 0.124 3.876 5 N -0.974 5.974 6 C 0.208 3.792 7 C -0.529 4.529 8 H 0.066 0.934 9 C 0.053 3.947 10 N -0.926 5.926 11 Si 0.893 3.107 12 H -0.266 1.266 13 H -0.300 1.300 14 H -0.249 1.249 15 S 2.694 3.306 16 O -0.951 6.951 17 O -0.979 6.979 18 C -0.663 4.663 19 C 0.013 3.987 20 C -0.138 4.138 21 C 0.155 3.845 22 F -0.125 7.125 23 C -0.140 4.140 24 C 0.118 3.882 25 C 0.236 3.764 26 N -0.389 5.389 27 H 0.131 0.869 28 H 0.133 0.867 29 H 0.109 0.891 30 H 0.094 0.906 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.261 0.739 34 H 0.192 0.808 35 H 0.193 0.807 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 -14.870 -0.639 14.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.070 4.070 3 C -0.090 4.090 4 C -0.003 4.003 5 N -0.811 5.811 6 C 0.083 3.917 7 C -0.568 4.568 8 H 0.084 0.916 9 C -0.148 4.148 10 N -0.565 5.565 11 Si 0.720 3.280 12 H -0.191 1.191 13 H -0.227 1.227 14 H -0.172 1.172 15 S 2.784 3.216 16 O -0.941 6.941 17 O -0.969 6.969 18 C -0.752 4.752 19 C -0.006 4.006 20 C -0.157 4.157 21 C 0.135 3.865 22 F -0.104 7.104 23 C -0.162 4.162 24 C 0.113 3.887 25 C -0.080 4.080 26 N -0.064 5.064 27 H 0.149 0.851 28 H 0.150 0.850 29 H 0.128 0.872 30 H 0.112 0.888 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.209 0.791 35 H 0.210 0.790 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.442 -13.855 -2.057 14.218 hybrid contribution 1.078 1.281 1.058 1.981 sum -1.363 -12.574 -0.999 12.687 Atomic orbital electron populations 1.81234 1.14404 1.11215 1.10053 1.29147 0.94977 0.91187 0.91716 1.19953 0.80318 1.08239 1.00527 1.21274 0.78034 1.05696 0.95263 1.57094 1.15244 1.20324 1.88400 1.19647 0.94173 0.81079 0.96772 1.21523 1.38858 1.03685 0.92779 0.91584 1.25176 0.95177 0.98473 0.95960 1.69970 1.45677 1.21161 1.19714 0.86520 0.78519 0.80296 0.82681 1.19097 1.22686 1.17232 1.01819 0.73071 0.72571 0.74102 1.93549 1.66415 1.54112 1.80052 1.93585 1.47025 1.83911 1.72375 1.31148 1.09115 1.07452 1.27457 1.21178 0.94614 0.91462 0.93344 1.21819 0.97237 1.01529 0.95149 1.17704 0.95363 0.94315 0.79147 1.91567 1.91240 1.92523 1.35024 1.21285 1.02855 0.98661 0.93392 1.15125 0.92969 0.88198 0.92379 1.25240 0.94759 0.93481 0.94529 1.80801 1.09359 1.08751 1.07471 0.85139 0.84954 0.87245 0.88769 0.94175 0.92562 0.93026 0.79086 0.79000 0.83078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.16 18.54 20.01 0.37 -13.79 16 2 C 0.25 5.68 15.43 89.44 1.38 7.06 16 3 C -0.05 -0.91 6.03 28.79 0.17 -0.74 16 4 C 0.12 2.86 5.31 86.38 0.46 3.32 16 5 N -0.97 -29.67 2.77 -519.82 -1.44 -31.11 16 6 C 0.21 8.15 3.77 85.63 0.32 8.47 16 7 C -0.53 -24.81 6.55 25.60 0.17 -24.65 16 8 H 0.07 3.28 7.99 -2.91 -0.02 3.26 16 9 C 0.05 2.75 4.70 84.65 0.40 3.15 16 10 N -0.93 -52.18 13.96 21.45 0.30 -51.88 16 11 Si 0.89 42.18 26.64 68.60 1.83 44.01 16 12 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 13 H -0.30 -14.85 7.11 99.48 0.71 -14.15 16 14 H -0.25 -11.42 6.54 99.48 0.65 -10.77 16 15 S 2.69 80.87 5.24 -56.49 -0.30 80.58 16 16 O -0.95 -25.15 15.78 -128.00 -2.02 -27.17 16 17 O -0.98 -36.76 14.93 -128.00 -1.91 -38.67 16 18 C -0.66 -18.36 5.97 22.54 0.13 -18.22 16 19 C 0.01 0.24 9.53 22.22 0.21 0.46 16 20 C -0.14 -2.24 10.02 22.37 0.22 -2.01 16 21 C 0.15 3.38 7.29 22.34 0.16 3.54 16 22 F -0.13 -2.67 17.26 44.97 0.78 -1.89 16 23 C -0.14 -3.89 9.73 22.59 0.22 -3.67 16 24 C 0.12 3.86 5.55 -21.37 -0.12 3.75 16 25 C 0.24 9.72 9.36 88.36 0.83 10.55 16 26 N -0.39 -18.05 14.72 18.97 0.28 -17.77 16 27 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 28 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.11 1.99 7.47 -2.39 -0.02 1.98 16 30 H 0.09 2.30 8.10 -2.39 -0.02 2.28 16 31 H 0.04 1.76 4.48 -2.38 -0.01 1.75 16 32 H 0.06 2.03 7.54 -2.38 -0.02 2.02 16 33 H 0.26 14.35 8.31 -92.70 -0.77 13.58 16 34 H 0.19 2.34 7.35 -2.91 -0.02 2.32 16 35 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.15 4.07 8.06 -2.91 -0.02 4.05 16 Total: -1.00 -69.46 333.49 3.55 -65.91 By element: Atomic # 1 Polarization: -0.30 SS G_CDS: 1.10 Total: 0.80 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: 4.56 Total: -9.00 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -0.49 Total: -114.55 kcal Atomic # 8 Polarization: -61.91 SS G_CDS: -3.93 Total: -65.84 kcal Atomic # 9 Polarization: -2.67 SS G_CDS: 0.78 Total: -1.89 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 1.83 Total: 44.01 kcal Atomic # 16 Polarization: 80.87 SS G_CDS: -0.30 Total: 80.58 kcal Total: -69.46 3.55 -65.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157638477.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.601 kcal (2) G-P(sol) polarization free energy of solvation -69.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds