Wall clock time and date at job start Tue Mar 31 2020 20:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52992 * 109.47184 * 22.98830 * 3 2 1 5 5 N 1.46506 * 109.47296 * 179.97438 * 4 3 2 6 6 C 1.46498 * 119.99864 * 280.00469 * 5 4 3 7 7 C 1.50701 * 109.47012 * 274.99353 * 6 5 4 8 8 H 1.07999 * 119.99704 * 0.02562 * 7 6 5 9 9 C 1.37875 * 120.00057 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99919 * 0.02562 * 9 7 6 11 11 Si 1.86794 * 120.00207 * 180.02562 * 9 7 6 12 12 H 1.48505 * 109.47250 * 0.02562 * 11 9 7 13 13 H 1.48497 * 109.47255 * 120.00220 * 11 9 7 14 14 H 1.48498 * 109.47472 * 240.00413 * 11 9 7 15 15 S 1.65598 * 120.00012 * 99.99854 * 5 4 3 16 16 O 1.42102 * 106.40228 * 345.12869 * 15 5 4 17 17 O 1.42098 * 106.40600 * 212.20804 * 15 5 4 18 18 C 1.76202 * 107.21696 * 98.66628 * 15 5 4 19 19 C 1.37908 * 120.06450 * 112.32220 * 18 15 5 20 20 C 1.38398 * 120.21767 * 180.29753 * 19 18 15 21 21 C 1.38278 * 120.34783 * 359.69983 * 20 19 18 22 22 C 1.38236 * 120.12308 * 0.02562 * 21 20 19 23 23 F 1.35102 * 120.11522 * 179.97438 * 22 21 20 24 24 C 1.39654 * 120.06272 * 292.06048 * 18 15 5 25 25 C 1.43193 * 120.17058 * 0.02562 * 24 18 15 26 26 N 4.35008 * 107.43984 * 357.97326 * 2 1 3 27 27 H 1.09002 * 109.47009 * 262.98628 * 3 2 1 28 28 H 1.09007 * 109.46844 * 142.98641 * 3 2 1 29 29 H 1.08993 * 109.47462 * 59.99785 * 4 3 2 30 30 H 1.09004 * 109.47463 * 299.99320 * 4 3 2 31 31 H 1.08993 * 109.47191 * 34.99615 * 6 5 4 32 32 H 1.09005 * 109.46961 * 154.99398 * 6 5 4 33 33 H 0.96998 * 119.99938 * 180.02562 * 10 9 7 34 34 H 1.07999 * 119.89419 * 0.02562 * 19 18 15 35 35 H 1.08005 * 119.83026 * 179.71578 * 20 19 18 36 36 H 1.08003 * 119.94062 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1186 -1.3270 -0.5633 5 7 4.5837 -1.3261 -0.5639 6 6 5.3153 -0.6350 -1.6284 7 6 5.4594 -1.5517 -2.8158 8 1 5.0469 -2.5492 -2.7811 9 6 6.1170 -1.1166 -3.9469 10 7 6.6189 0.0983 -3.9893 11 14 6.2950 -2.2526 -5.4190 12 1 5.6476 -3.5553 -5.1202 13 1 5.6426 -1.6360 -6.6018 14 1 7.7359 -2.4696 -5.7054 15 16 5.4126 -2.1062 0.6388 16 8 4.4728 -2.3610 1.6738 17 8 6.6118 -1.3713 0.8416 18 6 5.8937 -3.6786 0.0055 19 6 7.2264 -3.9561 -0.2153 20 6 7.6073 -5.1878 -0.7185 21 6 6.6569 -6.1525 -0.9982 22 6 5.3175 -5.8915 -0.7770 23 9 4.3891 -6.8339 -1.0509 24 6 4.9266 -4.6480 -0.2687 25 6 3.5414 -4.3684 -0.0371 26 7 2.4398 -4.1475 0.1468 27 1 2.9713 0.1263 1.0200 28 1 2.9710 0.8215 -0.6187 29 1 2.7554 -1.4527 -1.5832 30 1 2.7558 -2.1478 0.0554 31 1 4.7673 0.2595 -1.9243 32 1 6.3036 -0.3522 -1.2656 33 1 7.0812 0.4045 -4.7851 34 1 7.9750 -3.2083 0.0010 35 1 8.6524 -5.3969 -0.8933 36 1 6.9615 -7.1116 -1.3903 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157638950.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:35:24 Heat of formation + Delta-G solvation = -20.359604 kcal Electronic energy + Delta-G solvation = -27268.035711 eV Core-core repulsion = 23181.014016 eV Total energy + Delta-G solvation = -4087.021694 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.068 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -49.20711 -39.35108 -37.50368 -36.96442 -36.34262 -35.71548 -35.59299 -32.91682 -31.89940 -30.95677 -30.75271 -27.13206 -24.55817 -23.94297 -23.46245 -22.22141 -19.76964 -18.71018 -17.75501 -17.71713 -17.15014 -16.73195 -16.56651 -15.97482 -15.86135 -15.62797 -15.26667 -14.74647 -14.67381 -14.07583 -13.90750 -13.73426 -13.49871 -13.42529 -13.16007 -12.76147 -12.59804 -12.39562 -12.34349 -12.28906 -12.18412 -11.99980 -11.78589 -11.71110 -11.60422 -11.28726 -11.06610 -10.85251 -10.68710 -10.57876 -10.22097 -9.98738 -9.59882 -9.01814 -8.64473 -8.41114 -6.26521 -4.33625 0.17093 0.61281 0.75889 2.42145 2.69557 2.89811 2.99193 3.14453 3.14653 3.24745 3.27323 3.44289 3.50348 3.84658 3.92039 4.23855 4.25274 4.39838 4.61455 4.83403 4.97307 5.08088 5.11255 5.19478 5.25735 5.46198 5.61582 5.66762 5.69368 5.75329 5.93730 6.14479 6.24180 6.43536 7.03594 7.17906 7.28436 7.31885 7.69472 7.74895 7.95105 8.71082 9.34116 10.81266 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.007905 B = 0.007176 C = 0.005111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3541.347250 B = 3900.911079 C = 5477.096056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.220 3.780 3 C -0.047 4.047 4 C 0.120 3.880 5 N -0.975 5.975 6 C 0.240 3.760 7 C -0.547 4.547 8 H 0.063 0.937 9 C 0.070 3.930 10 N -0.885 5.885 11 Si 0.888 3.112 12 H -0.272 1.272 13 H -0.282 1.282 14 H -0.281 1.281 15 S 2.679 3.321 16 O -0.961 6.961 17 O -0.941 6.941 18 C -0.594 4.594 19 C -0.019 4.019 20 C -0.081 4.081 21 C -0.108 4.108 22 C 0.125 3.875 23 F -0.126 7.126 24 C 0.040 3.960 25 C 0.225 3.775 26 N -0.357 5.357 27 H 0.109 0.891 28 H 0.122 0.878 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.266 0.734 34 H 0.162 0.838 35 H 0.151 0.849 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.763 -8.784 6.105 11.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.098 4.098 3 C -0.089 4.089 4 C -0.008 4.008 5 N -0.814 5.814 6 C 0.119 3.881 7 C -0.586 4.586 8 H 0.081 0.919 9 C -0.134 4.134 10 N -0.522 5.522 11 Si 0.715 3.285 12 H -0.196 1.196 13 H -0.208 1.208 14 H -0.207 1.207 15 S 2.766 3.234 16 O -0.951 6.951 17 O -0.931 6.931 18 C -0.679 4.679 19 C -0.038 4.038 20 C -0.100 4.100 21 C -0.127 4.127 22 C 0.102 3.898 23 F -0.105 7.105 24 C 0.035 3.965 25 C -0.090 4.090 26 N -0.032 5.032 27 H 0.127 0.873 28 H 0.139 0.861 29 H 0.112 0.888 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.180 0.820 35 H 0.168 0.832 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.616 -8.052 7.065 10.833 hybrid contribution 0.926 -1.476 -1.853 2.544 sum 2.542 -9.528 5.211 11.154 Atomic orbital electron populations 1.81168 1.12969 1.08797 1.09329 1.29006 0.95049 0.92992 0.92754 1.19778 0.81606 1.02293 1.05244 1.21327 0.80139 0.95783 1.03556 1.57415 1.13112 1.65946 1.44902 1.19423 0.92403 0.92863 0.83458 1.21533 1.37106 1.00580 0.99357 0.91913 1.24881 0.94995 0.95074 0.98419 1.69918 1.36456 1.16604 1.29267 0.86595 0.78031 0.81071 0.82765 1.19630 1.20816 1.20679 1.02510 0.73861 0.73478 0.73508 1.93596 1.62346 1.85747 1.53380 1.93590 1.46701 1.68489 1.84328 1.31434 1.00422 1.22175 1.13909 1.21063 0.93804 0.97245 0.91688 1.21410 1.00403 0.92370 0.95839 1.21339 0.90301 1.01593 0.99418 1.17590 0.86949 0.85339 0.99899 1.91555 1.64957 1.62819 1.91146 1.15241 0.85296 0.93706 1.02241 1.25376 0.92726 0.95967 0.94968 1.81210 1.10695 1.04691 1.06652 0.87283 0.86057 0.88849 0.89472 0.93216 0.92415 0.92441 0.82041 0.83165 0.83089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.88 18.54 42.16 0.78 -7.10 16 2 C 0.22 3.41 15.43 -20.76 -0.32 3.09 16 3 C -0.05 -0.64 5.98 -29.52 -0.18 -0.82 16 4 C 0.12 1.95 4.88 -4.04 -0.02 1.93 16 5 N -0.97 -17.28 2.78 -115.67 -0.32 -17.60 16 6 C 0.24 4.99 5.42 -5.19 -0.03 4.96 16 7 C -0.55 -12.64 9.38 -34.44 -0.32 -12.97 16 8 H 0.06 1.43 7.81 -52.49 -0.41 1.02 16 9 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 10 N -0.88 -22.77 13.29 55.43 0.74 -22.03 16 11 Si 0.89 19.14 29.54 -169.99 -5.02 14.12 16 12 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 13 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 14 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 15 S 2.68 45.85 5.09 -107.50 -0.55 45.30 16 16 O -0.96 -17.16 15.22 -57.17 -0.87 -18.03 16 17 O -0.94 -17.38 15.73 -57.17 -0.90 -18.28 16 18 C -0.59 -9.08 5.95 -39.17 -0.23 -9.31 16 19 C -0.02 -0.24 9.54 -39.64 -0.38 -0.62 16 20 C -0.08 -0.78 10.03 -39.51 -0.40 -1.18 16 21 C -0.11 -1.07 10.01 -39.57 -0.40 -1.47 16 22 C 0.12 1.63 7.28 -38.96 -0.28 1.35 16 23 F -0.13 -1.69 16.81 2.25 0.04 -1.66 16 24 C 0.04 0.62 5.74 -106.82 -0.61 0.00 16 25 C 0.23 3.80 11.46 -22.39 -0.26 3.54 16 26 N -0.36 -6.38 16.33 41.94 0.68 -5.70 16 27 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.12 1.47 7.73 -51.93 -0.40 1.07 16 29 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 30 H 0.09 1.48 3.62 -51.93 -0.19 1.29 16 31 H 0.05 1.05 7.70 -51.93 -0.40 0.65 16 32 H 0.06 1.29 7.05 -51.93 -0.37 0.92 16 33 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 34 H 0.16 1.86 7.33 -52.49 -0.38 1.47 16 35 H 0.15 0.90 8.06 -52.48 -0.42 0.47 16 36 H 0.15 1.00 8.06 -52.48 -0.42 0.57 16 LS Contribution 343.14 15.07 5.17 5.17 Total: -1.00 -29.98 343.14 -6.74 -36.72 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: -2.98 Total: -1.07 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -3.52 Total: -9.85 kcal Atomic # 7 Polarization: -54.30 SS G_CDS: 1.88 Total: -52.42 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -1.77 Total: -36.31 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.66 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Atomic # 16 Polarization: 45.85 SS G_CDS: -0.55 Total: 45.30 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.98 -6.74 -36.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157638950.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.364 kcal (2) G-P(sol) polarization free energy of solvation -29.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds