Wall clock time and date at job start Tue Mar 31 2020 20:37:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00115 * 2 1 4 4 H 1.48501 * 109.47201 * 270.00327 * 3 2 1 5 5 H 1.48496 * 109.47142 * 30.00167 * 3 2 1 6 6 H 1.48504 * 109.47302 * 150.00220 * 3 2 1 7 7 C 1.37878 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99912 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99948 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.46778 * 179.97438 * 9 7 2 11 11 S 1.81408 * 109.47084 * 179.97438 * 10 9 7 12 12 O 1.42100 * 110.54085 * 68.36976 * 11 10 9 13 13 O 1.42103 * 110.54095 * 291.62476 * 11 10 9 14 14 N 1.65594 * 104.45147 * 179.97438 * 11 10 9 15 15 C 1.34778 * 120.00317 * 64.99933 * 14 11 10 16 16 O 1.21576 * 119.99449 * 0.02562 * 15 14 11 17 17 C 1.47705 * 120.00345 * 179.97438 * 15 14 11 18 18 C 1.41496 * 126.51803 * 180.02562 * 17 15 14 19 19 C 1.35371 * 105.50187 * 179.97438 * 18 17 15 20 20 N 1.35034 * 107.22924 * 0.02562 * 19 18 17 21 21 C 1.46502 * 124.88692 * 180.02562 * 20 19 18 22 22 C 1.52998 * 109.47299 * 125.01755 * 21 20 19 23 23 F 1.39903 * 109.46985 * 174.99729 * 22 21 20 24 24 F 1.39895 * 109.47447 * 295.00188 * 22 21 20 25 25 N 1.28468 * 110.23105 * 359.97438 * 20 19 18 26 26 H 0.97002 * 120.00179 * 359.97438 * 1 2 3 27 27 H 1.08993 * 109.47424 * 59.99639 * 9 7 2 28 28 H 1.09001 * 109.46724 * 299.98841 * 9 7 2 29 29 H 1.08997 * 109.47782 * 59.99806 * 10 9 7 30 30 H 1.09001 * 109.47355 * 299.99491 * 10 9 7 31 31 H 0.96998 * 119.99677 * 245.00238 * 14 11 10 32 32 H 1.07999 * 127.24983 * 0.02562 * 18 17 15 33 33 H 1.07998 * 126.38737 * 179.97438 * 19 18 17 34 34 H 1.08991 * 109.46812 * 245.02313 * 21 20 19 35 35 H 1.09004 * 109.46512 * 5.02127 * 21 20 19 36 36 H 1.09003 * 109.47136 * 55.00359 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0214 -2.6366 -0.0001 11 16 5.8355 -2.6367 -0.0001 12 8 6.3341 -2.1463 1.2368 13 8 6.3341 -2.1462 -1.2371 14 7 6.2486 -4.2403 0.0004 15 6 5.9391 -5.0164 -1.0571 16 8 5.3569 -4.5389 -2.0116 17 6 6.3081 -6.4466 -1.0568 18 6 6.0532 -7.3821 -2.0873 19 6 6.5681 -8.5542 -1.6473 20 7 7.0968 -8.3255 -0.4260 21 6 7.7579 -9.3360 0.4035 22 6 9.1593 -8.8502 0.7791 23 9 9.7472 -9.7612 1.6632 24 9 9.9428 -8.7488 -0.3754 25 7 6.9376 -7.0940 -0.0966 26 1 -0.4850 0.8400 0.0004 27 1 3.8745 -0.6808 0.8904 28 1 3.8751 -0.6798 -0.8896 29 1 3.6584 -3.1503 -0.8902 30 1 3.6578 -3.1506 0.8897 31 1 6.7134 -4.6210 0.7619 32 1 5.5539 -7.1994 -3.0273 33 1 6.5572 -9.4968 -2.1744 34 1 7.1751 -9.5000 1.3098 35 1 7.8343 -10.2699 -0.1534 36 1 9.0891 -7.8733 1.2576 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000192886546.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:01 Heat of formation + Delta-G solvation = -158.004899 kcal Electronic energy + Delta-G solvation = -26428.211652 eV Core-core repulsion = 21904.451985 eV Total energy + Delta-G solvation = -4523.759667 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 337.074 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.10788 -48.12813 -43.82769 -41.01291 -38.35242 -37.30207 -35.98808 -35.76141 -35.16281 -33.52234 -31.87169 -30.36906 -27.97321 -26.28005 -24.01549 -23.21089 -22.72029 -21.78696 -20.78993 -19.68708 -19.33115 -18.79630 -18.65549 -18.48518 -18.15127 -17.49525 -17.17348 -16.82372 -16.58453 -16.33612 -16.01955 -15.66405 -15.32931 -15.01892 -14.91920 -14.84010 -14.47935 -14.43241 -13.94026 -13.85862 -13.77920 -13.50827 -13.43697 -13.31951 -13.11638 -13.04776 -12.42142 -12.34885 -12.18175 -12.04486 -11.96656 -11.78801 -11.69232 -11.22840 -10.84394 -10.44711 -10.20926 -8.36356 -6.42804 -1.09584 0.07106 0.98647 1.12086 1.32938 1.34264 1.34815 1.45268 1.93239 2.30363 2.42597 2.49094 2.89811 2.97339 3.09481 3.18266 3.38334 3.53930 3.66656 3.82465 3.89542 3.96116 3.98526 4.27957 4.31822 4.51412 4.63749 4.67533 5.01161 5.04600 5.18054 5.45127 5.50671 5.66027 6.15814 6.21973 6.62582 6.67639 7.21185 8.79282 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.023747 B = 0.002539 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.810743 B =11024.582940 C =11411.593201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.014 3.986 3 Si 0.927 3.073 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.245 1.245 7 C -0.529 4.529 8 H 0.048 0.952 9 C -0.015 4.015 10 C -0.577 4.577 11 S 2.602 3.398 12 O -0.961 6.961 13 O -0.968 6.968 14 N -1.032 6.032 15 C 0.627 3.373 16 O -0.514 6.514 17 C -0.041 4.041 18 C -0.190 4.190 19 C 0.019 3.981 20 N -0.276 5.276 21 C 0.073 3.927 22 C 0.250 3.750 23 F -0.197 7.197 24 F -0.214 7.214 25 N -0.265 5.265 26 H 0.271 0.729 27 H 0.043 0.957 28 H 0.032 0.968 29 H 0.135 0.865 30 H 0.150 0.850 31 H 0.449 0.551 32 H 0.172 0.828 33 H 0.236 0.764 34 H 0.154 0.846 35 H 0.166 0.834 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.069 -26.145 1.779 32.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.185 4.185 3 Si 0.749 3.251 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.168 1.168 7 C -0.568 4.568 8 H 0.066 0.934 9 C -0.054 4.054 10 C -0.710 4.710 11 S 2.700 3.300 12 O -0.951 6.951 13 O -0.958 6.958 14 N -0.798 5.798 15 C 0.414 3.586 16 O -0.385 6.385 17 C -0.201 4.201 18 C -0.218 4.218 19 C -0.123 4.123 20 N -0.066 5.066 21 C -0.047 4.047 22 C 0.196 3.804 23 F -0.178 7.178 24 F -0.195 7.195 25 N -0.103 5.103 26 H 0.080 0.920 27 H 0.061 0.939 28 H 0.050 0.950 29 H 0.154 0.846 30 H 0.169 0.831 31 H 0.289 0.711 32 H 0.190 0.810 33 H 0.252 0.748 34 H 0.172 0.828 35 H 0.183 0.817 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 19.717 -24.954 2.195 31.879 hybrid contribution -0.706 0.282 -0.451 0.884 sum 19.011 -24.671 1.744 31.195 Atomic orbital electron populations 1.70006 1.07925 1.28477 1.51488 1.25884 0.95689 1.03099 0.93824 0.85997 0.80084 0.79143 0.79869 1.18767 1.19678 1.16817 1.21119 0.90025 0.93978 1.51681 0.93382 1.19399 0.97442 0.90259 0.98342 1.30167 1.20684 1.07262 1.12863 1.05408 0.78652 0.72449 0.73486 1.93582 1.79193 1.77103 1.45212 1.93569 1.78567 1.77592 1.46060 1.54756 1.66354 1.31079 1.27580 1.17165 0.75899 0.85184 0.80390 1.90999 1.39779 1.73962 1.33784 1.21428 1.08474 0.93691 0.96489 1.22144 1.06659 0.91464 1.01555 1.23588 0.99721 1.02297 0.86661 1.45486 1.40322 1.06098 1.14663 1.23399 0.90910 0.90151 1.00233 1.22272 0.86262 0.94623 0.77280 1.93035 1.85677 1.70292 1.68809 1.93020 1.77571 1.96981 1.51969 1.73330 1.18188 0.93342 1.25391 0.92036 0.93904 0.95008 0.84647 0.83149 0.71144 0.81005 0.74768 0.82812 0.81665 0.85229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.52 13.96 21.45 0.30 -58.22 16 2 C 0.01 0.81 5.47 84.66 0.46 1.27 16 3 Si 0.93 44.30 27.47 68.60 1.88 46.18 16 4 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 6 H -0.24 -10.94 6.54 99.48 0.65 -10.29 16 7 C -0.53 -30.65 9.66 25.60 0.25 -30.41 16 8 H 0.05 2.98 7.99 -2.91 -0.02 2.96 16 9 C -0.02 -0.73 4.05 29.85 0.12 -0.61 16 10 C -0.58 -22.30 5.82 71.98 0.42 -21.89 16 11 S 2.60 90.90 5.11 -56.49 -0.29 90.61 16 12 O -0.96 -35.25 18.08 -127.65 -2.31 -37.56 16 13 O -0.97 -40.69 17.04 -120.72 -2.06 -42.75 16 14 N -1.03 -27.34 5.60 -175.69 -0.98 -28.33 16 15 C 0.63 18.01 7.56 86.75 0.66 18.67 16 16 O -0.51 -18.44 15.03 12.41 0.19 -18.25 16 17 C -0.04 -0.89 7.13 42.45 0.30 -0.59 16 18 C -0.19 -3.18 10.81 22.41 0.24 -2.94 16 19 C 0.02 0.16 11.40 83.54 0.95 1.11 16 20 N -0.28 -2.64 3.39 -347.95 -1.18 -3.82 16 21 C 0.07 0.10 6.59 86.38 0.57 0.67 16 22 C 0.25 1.64 5.37 71.98 0.39 2.03 16 23 F -0.20 -1.69 17.34 44.97 0.78 -0.91 16 24 F -0.21 -2.75 17.32 44.97 0.78 -1.97 16 25 N -0.26 -4.42 11.26 -48.18 -0.54 -4.96 16 26 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 27 H 0.04 1.98 7.20 -2.39 -0.02 1.96 16 28 H 0.03 1.52 7.57 -2.39 -0.02 1.50 16 29 H 0.14 5.31 7.19 -2.39 -0.02 5.29 16 30 H 0.15 5.01 8.14 -2.39 -0.02 4.99 16 31 H 0.45 8.72 8.51 -96.75 -0.82 7.90 16 32 H 0.17 2.72 8.06 -2.91 -0.02 2.70 16 33 H 0.24 -0.42 8.06 -2.91 -0.02 -0.44 16 34 H 0.15 -0.43 8.14 -2.39 -0.02 -0.45 16 35 H 0.17 -0.86 8.04 -2.38 -0.02 -0.88 16 36 H 0.13 0.79 7.96 -2.39 -0.02 0.77 16 Total: -1.00 -86.18 341.38 1.20 -84.98 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: 0.27 Total: 7.68 kcal Atomic # 6 Polarization: -37.05 SS G_CDS: 4.36 Total: -32.69 kcal Atomic # 7 Polarization: -92.92 SS G_CDS: -2.41 Total: -95.33 kcal Atomic # 8 Polarization: -94.38 SS G_CDS: -4.18 Total: -98.56 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 1.56 Total: -2.88 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 1.88 Total: 46.18 kcal Atomic # 16 Polarization: 90.90 SS G_CDS: -0.29 Total: 90.61 kcal Total: -86.18 1.20 -84.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000192886546.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.023 kcal (2) G-P(sol) polarization free energy of solvation -86.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds