Wall clock time and date at job start Tue Mar 31 2020 19:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86800 * 120.00173 * 2 1 4 4 H 1.48500 * 109.47347 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46833 * 300.00126 * 3 2 1 6 6 H 1.48497 * 109.46998 * 59.99476 * 3 2 1 7 7 C 1.40047 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99712 * 180.02562 * 7 2 1 9 9 C 1.46376 * 120.00289 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99804 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00038 * 180.02562 * 9 7 2 12 12 C 1.46506 * 119.99969 * 179.97438 * 11 9 7 13 13 H 1.08999 * 109.47194 * 34.71875 * 12 11 9 14 14 C 1.52997 * 109.46691 * 274.72265 * 12 11 9 15 15 O 1.42897 * 109.47134 * 294.99725 * 14 12 11 16 16 C 1.50700 * 109.47204 * 154.72097 * 12 11 9 17 17 C 1.38266 * 119.98628 * 24.72689 * 16 12 11 18 18 C 1.38186 * 120.00960 * 179.72441 * 17 16 12 19 19 C 1.38374 * 119.98750 * 0.54868 * 18 17 16 20 20 Cl 1.73602 * 120.01203 * 179.74726 * 19 18 17 21 21 C 1.38333 * 119.97577 * 359.72333 * 19 18 17 22 22 C 1.38215 * 119.98444 * 204.99623 * 16 12 11 23 23 C 1.50706 * 119.99474 * 359.97438 * 22 16 12 24 24 F 1.39902 * 109.46752 * 179.97438 * 23 22 16 25 25 F 1.39893 * 109.46966 * 299.99538 * 23 22 16 26 26 F 1.39899 * 109.47058 * 60.00100 * 23 22 16 27 27 H 0.97000 * 119.99487 * 0.02562 * 1 2 3 28 28 H 0.97005 * 120.00161 * 359.71914 * 11 9 7 29 29 H 1.08998 * 109.47622 * 54.99856 * 14 12 11 30 30 H 1.09002 * 109.47075 * 174.99671 * 14 12 11 31 31 H 0.96702 * 114.00283 * 180.02562 * 15 14 12 32 32 H 1.07996 * 119.99325 * 0.02562 * 17 16 12 33 33 H 1.07999 * 120.00953 * 180.24948 * 18 17 16 34 34 H 1.07997 * 120.00654 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3464 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3964 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0016 12 6 1.2165 -4.9165 0.0022 13 1 0.3035 -4.8092 -0.5836 14 6 0.8581 -5.2977 1.4399 15 8 2.0552 -5.5520 2.1777 16 6 2.0782 -5.9943 -0.6035 17 6 3.4552 -5.8711 -0.5831 18 6 4.2459 -6.8618 -1.1333 19 6 3.6591 -7.9719 -1.7148 20 17 4.6518 -9.2138 -2.4119 21 6 2.2813 -8.0920 -1.7398 22 6 1.4914 -7.1029 -1.1841 23 6 -0.0097 -7.2338 -1.2107 24 9 -0.3622 -8.4295 -1.8458 25 9 -0.5006 -7.2386 0.0992 26 9 -0.5595 -6.1547 -1.9110 27 1 -0.4849 0.8401 -0.0004 28 1 2.9190 -3.6477 -0.0018 29 1 0.3103 -4.4793 1.9071 30 1 0.2375 -6.1938 1.4342 31 1 1.9036 -5.8002 3.0999 32 1 3.9129 -5.0027 -0.1329 33 1 5.3216 -6.7674 -1.1138 34 1 1.8228 -8.9584 -2.1931 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280251807.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:26 Heat of formation + Delta-G solvation = -209.574389 kcal Electronic energy + Delta-G solvation = -27693.812482 eV Core-core repulsion = 23010.019832 eV Total energy + Delta-G solvation = -4683.792650 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.048 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.22555 -47.75745 -47.60833 -40.03606 -37.77847 -36.68041 -36.13062 -33.76916 -32.45578 -32.29749 -30.59461 -28.31886 -26.09502 -26.02509 -23.54636 -22.55938 -21.07431 -19.43544 -18.75537 -18.49656 -18.45605 -17.53294 -16.89783 -16.15517 -15.72572 -15.45161 -15.23629 -14.87801 -14.56907 -14.42984 -14.23563 -14.13710 -14.00863 -13.78233 -13.64241 -13.53905 -13.24255 -13.05662 -12.69822 -12.41240 -12.02070 -11.93907 -11.77671 -11.31367 -11.14623 -11.08938 -10.96171 -10.85526 -10.51390 -10.23024 -9.58329 -9.42792 -8.91870 -8.79999 -7.70966 -7.66263 -6.24114 -4.69611 0.68557 0.95131 1.82544 2.63114 3.10517 3.18846 3.21093 3.23354 3.64124 4.00566 4.04538 4.37060 4.41096 4.51548 4.59584 4.64355 4.73403 4.83466 5.15240 5.27114 5.50820 5.54665 5.70251 5.83032 5.89370 5.94810 5.97557 6.25299 6.33918 6.43417 7.38977 7.79930 7.89001 7.98382 8.25887 8.97587 9.41440 10.52787 10.70737 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.014095 B = 0.003873 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.060780 B = 7227.525573 C = 8195.621781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.088 3.912 3 Si 0.908 3.092 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.069 0.931 9 C 0.555 3.445 10 O -0.578 6.578 11 N -0.752 5.752 12 C 0.176 3.824 13 H 0.110 0.890 14 C 0.055 3.945 15 O -0.567 6.567 16 C -0.007 4.007 17 C -0.085 4.085 18 C -0.075 4.075 19 C -0.048 4.048 20 Cl -0.065 7.065 21 C -0.064 4.064 22 C -0.175 4.175 23 C 0.509 3.491 24 F -0.178 7.178 25 F -0.169 7.169 26 F -0.164 7.164 27 H 0.268 0.732 28 H 0.382 0.618 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.371 0.629 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.469 -16.607 -1.159 17.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.132 4.132 3 Si 0.733 3.267 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.202 1.202 7 C -0.579 4.579 8 H 0.087 0.913 9 C 0.360 3.640 10 O -0.461 6.461 11 N -0.409 5.409 12 C 0.069 3.931 13 H 0.128 0.872 14 C -0.024 4.024 15 O -0.371 6.371 16 C -0.009 4.009 17 C -0.103 4.103 18 C -0.093 4.093 19 C -0.075 4.075 20 Cl -0.037 7.037 21 C -0.083 4.083 22 C -0.177 4.177 23 C 0.455 3.545 24 F -0.160 7.160 25 F -0.150 7.150 26 F -0.145 7.145 27 H 0.079 0.921 28 H 0.217 0.783 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.217 0.783 32 H 0.165 0.835 33 H 0.160 0.840 34 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.699 -16.439 -1.811 17.493 hybrid contribution 0.451 0.503 0.485 0.832 sum 6.151 -15.936 -1.325 17.133 Atomic orbital electron populations 1.70027 1.07044 1.27252 1.35106 1.25701 0.94630 1.00301 0.92584 0.86310 0.80496 0.81690 0.78235 1.18746 1.20147 1.20154 1.20872 0.93631 0.89132 1.54234 0.91317 1.18278 0.87278 0.82242 0.76231 1.90611 1.13959 1.86576 1.54944 1.46240 1.08594 1.03512 1.82537 1.19840 0.95758 0.83671 0.93798 0.87209 1.23061 0.86874 1.00185 0.92314 1.86441 1.32140 1.92038 1.26479 1.20022 0.95274 0.93354 0.92206 1.20966 0.92104 0.99073 0.98186 1.21274 1.01134 0.91650 0.95283 1.20666 0.91056 0.92778 1.02952 1.98372 1.69442 1.52769 1.83069 1.20712 0.91743 0.98368 0.97494 1.19668 0.91044 0.98975 1.08006 1.18207 0.88376 0.73886 0.74020 1.93154 1.93348 1.47117 1.82359 1.93120 1.89598 1.95966 1.36300 1.93262 1.87338 1.55003 1.78927 0.92098 0.78345 0.91986 0.92137 0.78293 0.83493 0.84009 0.83601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.51 11.83 55.55 0.66 -21.85 16 2 C 0.09 2.40 5.50 -17.37 -0.10 2.30 16 3 Si 0.91 19.77 29.56 -169.99 -5.02 14.74 16 4 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 7 C -0.54 -14.92 9.54 -35.63 -0.34 -15.26 16 8 H 0.07 1.73 7.85 -52.48 -0.41 1.32 16 9 C 0.55 15.29 7.71 -12.99 -0.10 15.19 16 10 O -0.58 -18.07 14.68 5.20 0.08 -18.00 16 11 N -0.75 -16.31 4.94 -56.34 -0.28 -16.59 16 12 C 0.18 3.36 1.93 -69.08 -0.13 3.22 16 13 H 0.11 2.36 5.17 -51.93 -0.27 2.09 16 14 C 0.05 0.95 6.65 37.16 0.25 1.20 16 15 O -0.57 -8.64 12.88 -35.23 -0.45 -9.10 16 16 C -0.01 -0.12 4.62 -104.62 -0.48 -0.60 16 17 C -0.08 -1.15 8.99 -39.59 -0.36 -1.50 16 18 C -0.07 -0.84 9.83 -39.55 -0.39 -1.23 16 19 C -0.05 -0.54 6.32 -39.50 -0.25 -0.79 16 20 Cl -0.07 -0.65 28.96 -51.86 -1.50 -2.15 16 21 C -0.06 -0.77 9.22 -39.55 -0.36 -1.14 16 22 C -0.17 -2.47 5.37 -104.63 -0.56 -3.03 16 23 C 0.51 7.38 2.83 36.01 0.10 7.49 16 24 F -0.18 -2.30 15.97 2.25 0.04 -2.26 16 25 F -0.17 -2.47 13.58 2.25 0.03 -2.44 16 26 F -0.16 -2.75 15.33 2.25 0.03 -2.72 16 27 H 0.27 7.15 8.29 -40.82 -0.34 6.81 16 28 H 0.38 7.35 6.18 -40.82 -0.25 7.10 16 29 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.06 0.95 4.94 -51.93 -0.26 0.69 16 31 H 0.37 4.02 9.12 45.56 0.42 4.44 16 32 H 0.15 1.93 6.06 -52.49 -0.32 1.61 16 33 H 0.14 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.15 1.49 7.16 -52.49 -0.38 1.11 16 LS Contribution 318.52 15.07 4.80 4.80 Total: -1.00 -33.24 318.52 -5.79 -39.04 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -1.45 Total: 10.68 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: -2.72 Total: 5.84 kcal Atomic # 7 Polarization: -38.82 SS G_CDS: 0.38 Total: -38.44 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.38 Total: -27.09 kcal Atomic # 9 Polarization: -7.52 SS G_CDS: 0.10 Total: -7.42 kcal Atomic # 14 Polarization: 19.77 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.50 Total: -2.15 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.24 -5.79 -39.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280251807.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -170.537 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds