Wall clock time and date at job start Tue Mar 31 2020 19:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30676 * 1 3 3 Si 1.86800 * 120.00173 * 2 1 4 4 H 1.48500 * 109.47347 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46833 * 300.00126 * 3 2 1 6 6 H 1.48497 * 109.46998 * 59.99476 * 3 2 1 7 7 C 1.40047 * 119.99832 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99712 * 180.02562 * 7 2 1 9 9 C 1.46376 * 120.00289 * 0.02562 * 7 2 1 10 10 O 1.21689 * 119.99804 * 359.97438 * 9 7 2 11 11 N 1.34773 * 120.00038 * 180.02562 * 9 7 2 12 12 C 1.46506 * 119.99969 * 179.97438 * 11 9 7 13 13 H 1.08999 * 109.47194 * 34.71875 * 12 11 9 14 14 C 1.52997 * 109.46691 * 274.72265 * 12 11 9 15 15 O 1.42897 * 109.47134 * 294.99725 * 14 12 11 16 16 C 1.50700 * 109.47204 * 154.72097 * 12 11 9 17 17 C 1.38266 * 119.98628 * 24.72689 * 16 12 11 18 18 C 1.38186 * 120.00960 * 179.72441 * 17 16 12 19 19 C 1.38374 * 119.98750 * 0.54868 * 18 17 16 20 20 Cl 1.73602 * 120.01203 * 179.74726 * 19 18 17 21 21 C 1.38333 * 119.97577 * 359.72333 * 19 18 17 22 22 C 1.38215 * 119.98444 * 204.99623 * 16 12 11 23 23 C 1.50706 * 119.99474 * 359.97438 * 22 16 12 24 24 F 1.39902 * 109.46752 * 179.97438 * 23 22 16 25 25 F 1.39893 * 109.46966 * 299.99538 * 23 22 16 26 26 F 1.39899 * 109.47058 * 60.00100 * 23 22 16 27 27 H 0.97000 * 119.99487 * 0.02562 * 1 2 3 28 28 H 0.97005 * 120.00161 * 359.71914 * 11 9 7 29 29 H 1.08998 * 109.47622 * 54.99856 * 14 12 11 30 30 H 1.09002 * 109.47075 * 174.99671 * 14 12 11 31 31 H 0.96702 * 114.00283 * 180.02562 * 15 14 12 32 32 H 1.07996 * 119.99325 * 0.02562 * 17 16 12 33 33 H 1.07999 * 120.00953 * 180.24948 * 18 17 16 34 34 H 1.07997 * 120.00654 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 3.7008 1.3464 -0.0006 5 1 1.8820 2.3964 -1.2125 6 1 1.8820 2.3964 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0010 9 6 1.2751 -2.4805 0.0005 10 8 0.0582 -2.4805 0.0005 11 7 1.9490 -3.6477 0.0016 12 6 1.2165 -4.9165 0.0022 13 1 0.3035 -4.8092 -0.5836 14 6 0.8581 -5.2977 1.4399 15 8 2.0552 -5.5520 2.1777 16 6 2.0782 -5.9943 -0.6035 17 6 3.4552 -5.8711 -0.5831 18 6 4.2459 -6.8618 -1.1333 19 6 3.6591 -7.9719 -1.7148 20 17 4.6518 -9.2138 -2.4119 21 6 2.2813 -8.0920 -1.7398 22 6 1.4914 -7.1029 -1.1841 23 6 -0.0097 -7.2338 -1.2107 24 9 -0.3622 -8.4295 -1.8458 25 9 -0.5006 -7.2386 0.0992 26 9 -0.5595 -6.1547 -1.9110 27 1 -0.4849 0.8401 -0.0004 28 1 2.9190 -3.6477 -0.0018 29 1 0.3103 -4.4793 1.9071 30 1 0.2375 -6.1938 1.4342 31 1 1.9036 -5.8002 3.0999 32 1 3.9129 -5.0027 -0.1329 33 1 5.3216 -6.7674 -1.1138 34 1 1.8228 -8.9584 -2.1931 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280251807.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:25 Heat of formation + Delta-G solvation = -234.013298 kcal Electronic energy + Delta-G solvation = -27694.872233 eV Core-core repulsion = 23010.019832 eV Total energy + Delta-G solvation = -4684.852401 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.048 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.39844 -48.88712 -48.83814 -41.20595 -39.42732 -37.87832 -37.41655 -35.37702 -34.49911 -33.38192 -32.03165 -29.77565 -28.00964 -27.19739 -24.78664 -23.78044 -22.49296 -21.15305 -20.04940 -19.71513 -19.64646 -19.06569 -18.35569 -17.51115 -17.29391 -16.84106 -16.47978 -16.05445 -15.89675 -15.87226 -15.66932 -15.43625 -15.30211 -15.01415 -14.84334 -14.76186 -14.56489 -14.43420 -14.23430 -13.86937 -13.55571 -13.29982 -12.95760 -12.79950 -12.69737 -12.62127 -12.39526 -12.21123 -11.97826 -11.93312 -10.96930 -10.90537 -10.42877 -9.91911 -9.82541 -9.53499 -8.29215 -6.85369 -0.34614 -0.05775 0.91526 1.41027 1.41589 1.50482 1.59228 2.17591 2.24904 2.46389 2.51857 2.87901 2.89567 3.19557 3.33030 3.39154 3.60476 3.64041 3.88816 4.10058 4.17542 4.22972 4.45650 4.49594 4.61873 4.69353 4.81099 4.96641 5.15451 5.32900 5.40880 5.86612 6.13336 6.24448 6.84313 6.87425 7.49139 8.47490 8.66807 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.014095 B = 0.003873 C = 0.003416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.060780 B = 7227.525573 C = 8195.621781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.030 3.970 3 Si 0.997 3.003 4 H -0.246 1.246 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.569 4.569 8 H 0.088 0.912 9 C 0.541 3.459 10 O -0.627 6.627 11 N -0.739 5.739 12 C 0.174 3.826 13 H 0.078 0.922 14 C 0.067 3.933 15 O -0.566 6.566 16 C -0.027 4.027 17 C -0.091 4.091 18 C -0.060 4.060 19 C -0.044 4.044 20 Cl -0.045 7.045 21 C -0.059 4.059 22 C -0.180 4.180 23 C 0.508 3.492 24 F -0.167 7.167 25 F -0.173 7.173 26 F -0.183 7.183 27 H 0.274 0.726 28 H 0.395 0.605 29 H 0.024 0.976 30 H 0.079 0.921 31 H 0.392 0.608 32 H 0.148 0.852 33 H 0.173 0.827 34 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.431 -17.563 -1.472 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.185 4.185 3 Si 0.816 3.184 4 H -0.169 1.169 5 H -0.195 1.195 6 H -0.195 1.195 7 C -0.606 4.606 8 H 0.106 0.894 9 C 0.346 3.654 10 O -0.514 6.514 11 N -0.395 5.395 12 C 0.068 3.932 13 H 0.096 0.904 14 C -0.012 4.012 15 O -0.373 6.373 16 C -0.028 4.028 17 C -0.109 4.109 18 C -0.079 4.079 19 C -0.070 4.070 20 Cl -0.016 7.016 21 C -0.077 4.077 22 C -0.183 4.183 23 C 0.454 3.546 24 F -0.148 7.148 25 F -0.154 7.154 26 F -0.164 7.164 27 H 0.084 0.916 28 H 0.232 0.768 29 H 0.042 0.958 30 H 0.097 0.903 31 H 0.241 0.759 32 H 0.166 0.834 33 H 0.191 0.809 34 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.710 -17.458 -2.107 19.624 hybrid contribution -0.422 0.615 0.565 0.936 sum 8.288 -16.843 -1.542 18.835 Atomic orbital electron populations 1.70193 1.09486 1.28850 1.36413 1.26939 0.95494 1.04847 0.91217 0.84985 0.79463 0.75499 0.78435 1.16857 1.19500 1.19453 1.21416 0.94752 0.89837 1.54579 0.89372 1.18609 0.86897 0.84055 0.75887 1.90566 1.16029 1.87709 1.57096 1.45841 1.09168 1.03403 1.81101 1.19778 0.95116 0.83580 0.94748 0.90386 1.22748 0.87428 0.99475 0.91539 1.86383 1.30903 1.91979 1.28084 1.19715 0.95756 0.93053 0.94242 1.20999 0.91282 0.99923 0.98744 1.21534 1.02417 0.90443 0.93470 1.20783 0.91046 0.93130 1.02087 1.98390 1.68733 1.51824 1.82636 1.20909 0.92056 0.98158 0.96591 1.19609 0.90586 0.99336 1.08725 1.18332 0.88851 0.73722 0.73740 1.93168 1.93335 1.46228 1.82107 1.93091 1.89726 1.95966 1.36602 1.93227 1.87707 1.56128 1.79339 0.91608 0.76828 0.95804 0.90290 0.75870 0.83425 0.80927 0.81706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.84 11.83 21.84 0.26 -49.58 16 2 C 0.03 1.67 5.50 85.30 0.47 2.14 16 3 Si 1.00 40.47 29.56 68.60 2.03 42.50 16 4 H -0.25 -9.16 7.11 99.48 0.71 -8.45 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 6 H -0.27 -10.57 7.11 99.48 0.71 -9.87 16 7 C -0.57 -31.82 9.54 24.83 0.24 -31.58 16 8 H 0.09 4.40 7.85 -2.91 -0.02 4.38 16 9 C 0.54 30.99 7.71 86.36 0.67 31.66 16 10 O -0.63 -41.48 14.68 -4.31 -0.06 -41.55 16 11 N -0.74 -32.98 4.94 -450.39 -2.22 -35.20 16 12 C 0.17 6.86 1.93 44.24 0.09 6.95 16 13 H 0.08 3.59 5.17 -2.39 -0.01 3.57 16 14 C 0.07 2.42 6.65 71.98 0.48 2.90 16 15 O -0.57 -16.95 12.88 -148.98 -1.92 -18.87 16 16 C -0.03 -0.82 4.62 -19.86 -0.09 -0.91 16 17 C -0.09 -2.31 8.99 22.26 0.20 -2.11 16 18 C -0.06 -1.17 9.83 22.29 0.22 -0.95 16 19 C -0.04 -0.85 6.32 22.32 0.14 -0.71 16 20 Cl -0.04 -0.73 28.96 -2.72 -0.08 -0.81 16 21 C -0.06 -1.27 9.22 22.29 0.21 -1.06 16 22 C -0.18 -4.94 5.37 -19.87 -0.11 -5.05 16 23 C 0.51 14.79 2.83 71.24 0.20 14.99 16 24 F -0.17 -4.16 15.97 44.97 0.72 -3.44 16 25 F -0.17 -5.14 13.58 44.97 0.61 -4.53 16 26 F -0.18 -6.41 15.33 44.97 0.69 -5.72 16 27 H 0.27 15.07 8.29 -92.71 -0.77 14.30 16 28 H 0.40 15.26 6.18 -92.70 -0.57 14.68 16 29 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 2.53 4.94 -2.39 -0.01 2.52 16 31 H 0.39 8.06 9.12 -74.06 -0.68 7.38 16 32 H 0.15 3.65 6.06 -2.91 -0.02 3.63 16 33 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.17 2.89 7.16 -2.91 -0.02 2.87 16 Total: -1.00 -75.28 318.52 2.70 -72.58 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: -0.02 Total: 28.36 kcal Atomic # 6 Polarization: 13.56 SS G_CDS: 2.71 Total: 16.27 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -1.96 Total: -84.79 kcal Atomic # 8 Polarization: -58.44 SS G_CDS: -1.98 Total: -60.42 kcal Atomic # 9 Polarization: -15.71 SS G_CDS: 2.02 Total: -13.69 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.08 Total: -0.81 kcal Total: -75.28 2.70 -72.58 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280251807.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -161.432 kcal (2) G-P(sol) polarization free energy of solvation -75.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -236.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds