Wall clock time and date at job start Tue Mar 31 2020 19:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47200 * 23.61949 * 3 2 1 5 5 C 1.36933 * 120.00103 * 273.01640 * 4 3 2 6 6 H 1.08002 * 119.99702 * 187.47732 * 5 4 3 7 7 C 1.38814 * 119.99971 * 7.48685 * 5 4 3 8 8 N 1.31618 * 120.00170 * 27.06023 * 7 5 4 9 9 Si 1.86804 * 119.99728 * 207.06625 * 7 5 4 10 10 H 1.48499 * 109.47191 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47085 * 119.99491 * 9 7 5 12 12 H 1.48501 * 109.47039 * 239.99698 * 9 7 5 13 13 S 1.65599 * 119.99687 * 93.02182 * 4 3 2 14 14 O 1.42102 * 106.39990 * 203.54116 * 13 4 3 15 15 O 1.42104 * 106.40411 * 336.45798 * 13 4 3 16 16 C 1.76199 * 107.22100 * 89.99868 * 13 4 3 17 17 C 1.39868 * 126.03914 * 90.02302 * 16 13 4 18 18 N 1.30843 * 108.20290 * 179.97438 * 17 16 13 19 19 N 1.40086 * 108.20066 * 359.97438 * 18 17 16 20 20 C 1.46501 * 126.03374 * 180.02562 * 19 18 17 21 21 C 1.53003 * 109.47199 * 304.98186 * 20 19 18 22 22 F 1.39901 * 109.47383 * 59.99815 * 21 20 19 23 23 F 1.39895 * 109.47049 * 179.97438 * 21 20 19 24 24 F 1.39901 * 109.46986 * 299.99600 * 21 20 19 25 25 C 1.34947 * 107.92765 * 359.76438 * 19 18 17 26 26 H 4.40639 * 5.51506 * 180.02562 * 4 1 2 27 27 H 1.09006 * 109.47011 * 263.62119 * 3 2 1 28 28 H 1.08996 * 109.47144 * 143.62419 * 3 2 1 29 29 H 0.97002 * 119.99616 * 179.97438 * 8 7 5 30 30 H 1.07995 * 125.90066 * 359.95743 * 17 16 13 31 31 H 1.09001 * 109.46862 * 64.97845 * 20 19 18 32 32 H 1.08996 * 109.47304 * 184.97946 * 20 19 18 33 33 H 1.07999 * 126.12470 * 180.23609 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2646 -0.5534 5 6 3.3048 -2.3495 0.2646 6 1 3.7774 -3.2434 -0.1151 7 6 2.8695 -2.3005 1.5819 8 7 1.8712 -1.5106 1.9161 9 14 3.7009 -3.3556 2.8801 10 1 4.7874 -4.1492 2.2517 11 1 4.2726 -2.4820 3.9361 12 1 2.7031 -4.2746 3.4843 13 16 3.4823 -1.3827 -2.1682 14 8 3.3841 -2.7610 -2.5000 15 8 2.7236 -0.3713 -2.8169 16 6 5.1760 -0.9414 -2.3712 17 6 6.2659 -1.8167 -2.3230 18 7 7.3572 -1.1217 -2.5177 19 7 6.9955 0.2198 -2.6967 20 6 7.9137 1.3345 -2.9431 21 6 8.9678 1.3815 -1.8351 22 9 9.6851 0.1804 -1.8225 23 9 9.8449 2.4455 -2.0707 24 9 8.3374 1.5611 -0.5991 25 6 5.6515 0.3031 -2.6078 26 1 -1.0498 -0.0004 -0.0004 27 1 3.0093 0.1150 1.0214 28 1 3.0090 0.8282 -0.6095 29 1 1.5669 -1.4767 2.8365 30 1 6.2154 -2.8822 -2.1541 31 1 8.4048 1.1945 -3.9061 32 1 7.3548 2.2702 -2.9529 33 1 5.0615 1.2024 -2.7052 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281311707.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:36 Heat of formation + Delta-G solvation = -61.903772 kcal Electronic energy + Delta-G solvation = -27397.107104 eV Core-core repulsion = 22754.054389 eV Total energy + Delta-G solvation = -4643.052714 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.049 amu Computer time = 2.53 seconds Orbital eigenvalues (eV) -50.38820 -47.95694 -47.79666 -41.22468 -36.30158 -36.09173 -34.84809 -34.27695 -31.73242 -30.96901 -30.44766 -28.88007 -26.42768 -24.16218 -23.75045 -21.82588 -21.27500 -19.04840 -18.80548 -18.68813 -18.17355 -17.85350 -17.28175 -16.71803 -16.28048 -15.49222 -15.25592 -14.74269 -14.67182 -14.64313 -14.32229 -14.28819 -14.22676 -13.98485 -13.95128 -13.53351 -13.32563 -13.19319 -12.84584 -12.51838 -12.36145 -11.67656 -11.43177 -11.30230 -11.09842 -10.93318 -10.86155 -10.43559 -10.32824 -10.13344 -9.65504 -9.58749 -9.18175 -9.01398 -8.70814 -8.11076 -6.21790 -3.77073 1.27127 1.52907 1.96085 2.35240 2.53931 3.22764 3.31411 3.32843 3.37017 3.52206 3.82006 3.88923 4.22956 4.29988 4.36185 4.47875 4.56542 4.59370 4.74871 4.88014 5.08196 5.28275 5.49061 5.67633 5.90760 6.14697 6.48251 6.59277 6.76216 7.05270 7.31466 7.41916 7.60491 8.38640 8.94192 9.08368 9.31419 10.76109 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.013251 B = 0.004372 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.553674 B = 6403.172970 C = 7062.178056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.096 4.096 3 C 0.254 3.746 4 N -0.839 5.839 5 C -0.325 4.325 6 H 0.112 0.888 7 C 0.047 3.953 8 N -0.850 5.850 9 Si 0.898 3.102 10 H -0.268 1.268 11 H -0.282 1.282 12 H -0.284 1.284 13 S 2.687 3.313 14 O -0.963 6.963 15 O -0.981 6.981 16 C -0.792 4.792 17 C 0.148 3.852 18 N -0.292 5.292 19 N -0.387 5.387 20 C 0.092 3.908 21 C 0.445 3.555 22 F -0.163 7.163 23 F -0.179 7.179 24 F -0.174 7.174 25 C 0.172 3.828 26 H 0.196 0.804 27 H 0.103 0.897 28 H 0.059 0.941 29 H 0.266 0.734 30 H 0.201 0.799 31 H 0.131 0.869 32 H 0.142 0.858 33 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.859 8.962 -7.070 15.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.099 4.099 3 C 0.129 3.871 4 N -0.671 5.671 5 C -0.456 4.456 6 H 0.129 0.871 7 C -0.160 4.160 8 N -0.488 5.488 9 Si 0.724 3.276 10 H -0.193 1.193 11 H -0.208 1.208 12 H -0.211 1.211 13 S 2.773 3.227 14 O -0.953 6.953 15 O -0.971 6.971 16 C -0.885 4.885 17 C -0.042 4.042 18 N -0.109 5.109 19 N -0.167 5.167 20 C -0.033 4.033 21 C 0.390 3.610 22 F -0.145 7.145 23 F -0.160 7.160 24 F -0.156 7.156 25 C 0.024 3.976 26 H 0.214 0.786 27 H 0.121 0.879 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.217 0.783 31 H 0.149 0.851 32 H 0.160 0.840 33 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 11.738 8.866 -7.741 16.622 hybrid contribution 0.178 -0.222 1.437 1.465 sum 11.916 8.644 -6.303 16.014 Atomic orbital electron populations 1.24151 0.95292 1.03370 1.05899 1.22933 0.94168 0.97100 0.95710 1.17759 0.84801 0.83964 1.00608 1.53129 1.71784 1.15972 1.26189 1.19220 1.40688 0.92773 0.92937 0.87055 1.24984 0.95184 0.97977 0.97849 1.70226 1.20476 1.39541 1.18563 0.86356 0.79999 0.79887 0.81343 1.19269 1.20848 1.21053 1.02511 0.73856 0.73276 0.73023 1.93471 1.86279 1.32434 1.83066 1.93484 1.68668 1.60618 1.74361 1.32873 1.28690 0.99743 1.27150 1.23645 0.87652 1.00207 0.92721 1.77539 1.23042 0.85725 1.24627 1.48688 1.04864 1.06586 1.56538 1.22814 0.91579 0.90825 0.98062 1.20551 0.82534 0.74344 0.83601 1.93288 1.79305 1.45315 1.96561 1.93215 1.71211 1.57188 1.94394 1.93259 1.81769 1.94993 1.45563 1.22493 0.83439 0.99189 0.92520 0.78644 0.87870 0.92335 0.92355 0.78254 0.85082 0.83970 0.79083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 69. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.90 19.25 29.55 0.57 -5.33 16 2 C -0.10 -2.26 11.20 -37.12 -0.42 -2.68 16 3 C 0.25 5.56 5.10 -6.83 -0.03 5.52 16 4 N -0.84 -19.28 2.88 -62.77 -0.18 -19.46 16 5 C -0.33 -8.12 9.36 -15.06 -0.14 -8.26 16 6 H 0.11 2.75 7.43 -52.49 -0.39 2.36 16 7 C 0.05 1.17 4.86 -17.43 -0.08 1.09 16 8 N -0.85 -21.80 9.10 55.49 0.50 -21.30 16 9 Si 0.90 19.64 29.63 -169.99 -5.04 14.60 16 10 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 11 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 12 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 13 S 2.69 56.03 5.75 -107.50 -0.62 55.41 16 14 O -0.96 -22.62 16.75 -57.17 -0.96 -23.58 16 15 O -0.98 -21.20 16.85 -57.17 -0.96 -22.17 16 16 C -0.79 -13.51 6.17 -40.01 -0.25 -13.76 16 17 C 0.15 2.45 11.81 -17.36 -0.21 2.25 16 18 N -0.29 -4.59 11.51 30.62 0.35 -4.24 16 19 N -0.39 -4.97 3.60 -61.37 -0.22 -5.19 16 20 C 0.09 0.73 6.51 -4.04 -0.03 0.70 16 21 C 0.45 4.57 3.28 37.16 0.12 4.69 16 22 F -0.16 -2.10 16.28 2.25 0.04 -2.06 16 23 F -0.18 -1.62 17.32 2.25 0.04 -1.58 16 24 F -0.17 -2.20 17.24 2.25 0.04 -2.16 16 25 C 0.17 2.35 11.19 -17.22 -0.19 2.16 16 26 H 0.20 3.55 7.80 -54.10 -0.42 3.12 16 27 H 0.10 2.33 6.52 -51.93 -0.34 1.99 16 28 H 0.06 1.06 7.68 -51.93 -0.40 0.66 16 29 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 30 H 0.20 2.99 8.06 -52.49 -0.42 2.56 16 31 H 0.13 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.14 0.57 8.07 -51.93 -0.42 0.15 16 33 H 0.19 1.90 8.06 -52.49 -0.42 1.48 16 LS Contribution 327.01 15.07 4.93 4.93 Total: -1.00 -33.57 327.01 -5.11 -38.68 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -2.37 Total: 1.75 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -0.66 Total: -13.62 kcal Atomic # 7 Polarization: -50.65 SS G_CDS: 0.46 Total: -50.19 kcal Atomic # 8 Polarization: -43.83 SS G_CDS: -1.92 Total: -45.75 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.11 Total: -5.80 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.04 Total: 14.60 kcal Atomic # 16 Polarization: 56.03 SS G_CDS: -0.62 Total: 55.41 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.57 -5.11 -38.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281311707.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.225 kcal (2) G-P(sol) polarization free energy of solvation -33.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.53 seconds