Wall clock time and date at job start Tue Mar 31 2020 19:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47200 * 23.61949 * 3 2 1 5 5 C 1.36933 * 120.00103 * 273.01640 * 4 3 2 6 6 H 1.08002 * 119.99702 * 187.47732 * 5 4 3 7 7 C 1.38814 * 119.99971 * 7.48685 * 5 4 3 8 8 N 1.31618 * 120.00170 * 27.06023 * 7 5 4 9 9 Si 1.86804 * 119.99728 * 207.06625 * 7 5 4 10 10 H 1.48499 * 109.47191 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47085 * 119.99491 * 9 7 5 12 12 H 1.48501 * 109.47039 * 239.99698 * 9 7 5 13 13 S 1.65599 * 119.99687 * 93.02182 * 4 3 2 14 14 O 1.42102 * 106.39990 * 203.54116 * 13 4 3 15 15 O 1.42104 * 106.40411 * 336.45798 * 13 4 3 16 16 C 1.76199 * 107.22100 * 89.99868 * 13 4 3 17 17 C 1.39868 * 126.03914 * 90.02302 * 16 13 4 18 18 N 1.30843 * 108.20290 * 179.97438 * 17 16 13 19 19 N 1.40086 * 108.20066 * 359.97438 * 18 17 16 20 20 C 1.46501 * 126.03374 * 180.02562 * 19 18 17 21 21 C 1.53003 * 109.47199 * 304.98186 * 20 19 18 22 22 F 1.39901 * 109.47383 * 59.99815 * 21 20 19 23 23 F 1.39895 * 109.47049 * 179.97438 * 21 20 19 24 24 F 1.39901 * 109.46986 * 299.99600 * 21 20 19 25 25 C 1.34947 * 107.92765 * 359.76438 * 19 18 17 26 26 H 4.40639 * 5.51506 * 180.02562 * 4 1 2 27 27 H 1.09006 * 109.47011 * 263.62119 * 3 2 1 28 28 H 1.08996 * 109.47144 * 143.62419 * 3 2 1 29 29 H 0.97002 * 119.99616 * 179.97438 * 8 7 5 30 30 H 1.07995 * 125.90066 * 359.95743 * 17 16 13 31 31 H 1.09001 * 109.46862 * 64.97845 * 20 19 18 32 32 H 1.08996 * 109.47304 * 184.97946 * 20 19 18 33 33 H 1.07999 * 126.12470 * 180.23609 * 25 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2646 -0.5534 5 6 3.3048 -2.3495 0.2646 6 1 3.7774 -3.2434 -0.1151 7 6 2.8695 -2.3005 1.5819 8 7 1.8712 -1.5106 1.9161 9 14 3.7009 -3.3556 2.8801 10 1 4.7874 -4.1492 2.2517 11 1 4.2726 -2.4820 3.9361 12 1 2.7031 -4.2746 3.4843 13 16 3.4823 -1.3827 -2.1682 14 8 3.3841 -2.7610 -2.5000 15 8 2.7236 -0.3713 -2.8169 16 6 5.1760 -0.9414 -2.3712 17 6 6.2659 -1.8167 -2.3230 18 7 7.3572 -1.1217 -2.5177 19 7 6.9955 0.2198 -2.6967 20 6 7.9137 1.3345 -2.9431 21 6 8.9678 1.3815 -1.8351 22 9 9.6851 0.1804 -1.8225 23 9 9.8449 2.4455 -2.0707 24 9 8.3374 1.5611 -0.5991 25 6 5.6515 0.3031 -2.6078 26 1 -1.0498 -0.0004 -0.0004 27 1 3.0093 0.1150 1.0214 28 1 3.0090 0.8282 -0.6095 29 1 1.5669 -1.4767 2.8365 30 1 6.2154 -2.8822 -2.1541 31 1 8.4048 1.1945 -3.9061 32 1 7.3548 2.2702 -2.9529 33 1 5.0615 1.2024 -2.7052 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281311707.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:55:35 Heat of formation + Delta-G solvation = -85.572051 kcal Electronic energy + Delta-G solvation = -27398.133437 eV Core-core repulsion = 22754.054389 eV Total energy + Delta-G solvation = -4644.079048 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.049 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -51.20724 -48.75485 -48.67994 -42.38357 -38.03705 -37.80550 -36.60763 -35.20647 -33.49910 -32.71486 -31.63966 -29.88119 -28.15369 -25.54249 -25.02755 -23.08629 -22.34114 -20.34905 -19.81025 -19.64783 -19.59255 -19.34957 -18.45524 -18.20935 -17.88362 -16.74502 -16.36482 -16.33278 -16.03722 -15.63709 -15.54280 -15.32842 -15.17065 -15.11235 -14.90182 -14.85036 -14.81075 -14.21668 -14.11632 -13.91214 -13.44647 -13.33673 -13.08214 -12.97667 -12.69572 -12.63815 -12.58567 -12.22284 -11.91164 -11.76202 -11.29301 -10.85510 -10.76808 -10.42493 -10.36518 -9.91084 -8.03099 -5.66359 -0.26625 0.38281 1.02365 1.21012 1.47561 1.53576 1.59004 1.63547 2.21103 2.47087 2.56371 2.61416 2.83678 2.91740 3.02110 3.02843 3.27969 3.37699 3.63513 3.81573 3.97645 4.00417 4.09080 4.34634 4.46688 4.56993 5.06716 5.22845 5.38610 5.57309 5.63617 5.78588 6.22870 6.56591 7.13774 7.36361 7.48373 8.94443 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.013251 B = 0.004372 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.553674 B = 6403.172970 C = 7062.178056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.135 4.135 3 C 0.254 3.746 4 N -0.865 5.865 5 C -0.341 4.341 6 H 0.102 0.898 7 C 0.005 3.995 8 N -0.882 5.882 9 Si 0.953 3.047 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.291 1.291 13 S 2.721 3.279 14 O -1.000 7.000 15 O -0.993 6.993 16 C -0.814 4.814 17 C 0.135 3.865 18 N -0.305 5.305 19 N -0.376 5.376 20 C 0.086 3.914 21 C 0.442 3.558 22 F -0.183 7.183 23 F -0.170 7.170 24 F -0.191 7.191 25 C 0.197 3.803 26 H 0.226 0.774 27 H 0.092 0.908 28 H 0.094 0.906 29 H 0.261 0.739 30 H 0.202 0.798 31 H 0.164 0.836 32 H 0.193 0.807 33 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.298 10.946 -8.464 18.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 C -0.137 4.137 3 C 0.128 3.872 4 N -0.696 5.696 5 C -0.470 4.470 6 H 0.120 0.880 7 C -0.198 4.198 8 N -0.521 5.521 9 Si 0.780 3.220 10 H -0.190 1.190 11 H -0.207 1.207 12 H -0.218 1.218 13 S 2.813 3.187 14 O -0.990 6.990 15 O -0.983 6.983 16 C -0.913 4.913 17 C -0.055 4.055 18 N -0.123 5.123 19 N -0.155 5.155 20 C -0.036 4.036 21 C 0.387 3.613 22 F -0.165 7.165 23 F -0.152 7.152 24 F -0.173 7.173 25 C 0.046 3.954 26 H 0.242 0.758 27 H 0.110 0.890 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.219 0.781 31 H 0.182 0.818 32 H 0.210 0.790 33 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 13.147 10.821 -9.088 19.301 hybrid contribution -0.114 -0.705 1.605 1.757 sum 13.034 10.115 -7.483 18.116 Atomic orbital electron populations 1.25026 0.96460 1.02615 1.05087 1.23733 0.95506 0.97947 0.96557 1.17926 0.84091 0.84472 1.00674 1.52984 1.75634 1.16129 1.24902 1.19266 1.40128 0.94518 0.93065 0.88011 1.25542 0.95604 0.99314 0.99300 1.70334 1.21978 1.41429 1.18333 0.85499 0.78825 0.78434 0.79291 1.18985 1.20655 1.21775 1.00422 0.74098 0.72226 0.71967 1.93431 1.87266 1.34880 1.83458 1.93467 1.69575 1.60736 1.74537 1.31822 1.25480 1.02067 1.31929 1.23776 0.87781 1.00761 0.93137 1.77504 1.22783 0.87285 1.24717 1.48908 1.05432 1.06686 1.54477 1.23468 0.91025 0.90957 0.98163 1.20900 0.82999 0.73829 0.83610 1.93255 1.79921 1.46652 1.96635 1.93234 1.71055 1.56603 1.94259 1.93232 1.82023 1.95032 1.46965 1.23076 0.84016 0.99146 0.89127 0.75774 0.89035 0.88806 0.92903 0.78114 0.81845 0.78978 0.74726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -11.97 19.25 74.32 1.43 -10.54 16 2 C -0.13 -6.34 11.20 31.13 0.35 -5.99 16 3 C 0.25 11.05 5.10 84.57 0.43 11.48 16 4 N -0.87 -39.94 2.88 -352.51 -1.02 -40.95 16 5 C -0.34 -17.39 9.36 84.03 0.79 -16.61 16 6 H 0.10 5.21 7.43 -2.91 -0.02 5.19 16 7 C 0.01 0.27 4.86 84.86 0.41 0.69 16 8 N -0.88 -46.37 9.10 21.65 0.20 -46.17 16 9 Si 0.95 41.42 29.63 68.60 2.03 43.45 16 10 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 12 H -0.29 -12.81 7.11 99.48 0.71 -12.11 16 13 S 2.72 111.90 5.75 -56.49 -0.32 111.57 16 14 O -1.00 -47.66 16.75 -128.00 -2.14 -49.80 16 15 O -0.99 -41.37 16.85 -128.00 -2.16 -43.52 16 16 C -0.81 -26.13 6.17 21.99 0.14 -25.99 16 17 C 0.14 4.34 11.81 85.23 1.01 5.34 16 18 N -0.30 -8.90 11.51 -57.02 -0.66 -9.56 16 19 N -0.38 -8.14 3.60 -348.06 -1.25 -9.39 16 20 C 0.09 0.92 6.51 86.38 0.56 1.49 16 21 C 0.44 7.62 3.28 71.98 0.24 7.86 16 22 F -0.18 -4.33 16.28 44.97 0.73 -3.60 16 23 F -0.17 -2.52 17.32 44.97 0.78 -1.74 16 24 F -0.19 -4.32 17.24 44.97 0.78 -3.55 16 25 C 0.20 4.57 11.19 83.54 0.93 5.51 16 26 H 0.23 7.91 7.80 -4.43 -0.03 7.88 16 27 H 0.09 4.19 6.52 -2.38 -0.02 4.18 16 28 H 0.09 3.25 7.68 -2.39 -0.02 3.23 16 29 H 0.26 13.26 8.31 -92.71 -0.77 12.49 16 30 H 0.20 6.07 8.06 -2.91 -0.02 6.05 16 31 H 0.16 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.19 0.20 8.07 -2.39 -0.02 0.18 16 33 H 0.24 3.24 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -75.12 327.01 4.42 -70.69 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 1.17 Total: 9.34 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 6.28 Total: -26.77 kcal Atomic # 7 Polarization: -103.34 SS G_CDS: -2.73 Total: -106.07 kcal Atomic # 8 Polarization: -89.02 SS G_CDS: -4.30 Total: -93.33 kcal Atomic # 9 Polarization: -11.17 SS G_CDS: 2.29 Total: -8.89 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: 111.90 SS G_CDS: -0.32 Total: 111.57 kcal Total: -75.12 4.42 -70.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281311707.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.879 kcal (2) G-P(sol) polarization free energy of solvation -75.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds