Wall clock time and date at job start Tue Mar 31 2020 19:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46503 * 109.47209 * 143.90463 * 3 2 1 5 5 C 1.36939 * 119.99673 * 86.87444 * 4 3 2 6 6 H 1.08000 * 119.99412 * 176.91935 * 5 4 3 7 7 C 1.38805 * 120.00219 * 356.92798 * 5 4 3 8 8 N 1.31617 * 120.00240 * 337.60022 * 7 5 4 9 9 Si 1.86807 * 120.00036 * 157.60409 * 7 5 4 10 10 H 1.48490 * 109.46954 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47012 * 119.99979 * 9 7 5 12 12 H 1.48508 * 109.46922 * 239.99406 * 9 7 5 13 13 S 1.65594 * 120.00136 * 266.60119 * 4 3 2 14 14 O 1.42100 * 106.40288 * 28.66972 * 13 4 3 15 15 O 1.42091 * 106.40422 * 161.59482 * 13 4 3 16 16 C 1.76205 * 107.21979 * 275.13490 * 13 4 3 17 17 C 1.35317 * 126.03893 * 117.69740 * 16 13 4 18 18 N 1.34946 * 107.74255 * 179.87540 * 17 16 13 19 19 C 1.46506 * 126.03857 * 180.15134 * 18 17 16 20 20 N 1.40085 * 107.92859 * 0.39124 * 18 17 16 21 21 C 1.30839 * 108.20615 * 359.76190 * 20 18 17 22 22 C 1.50695 * 125.90518 * 180.02562 * 21 20 18 23 23 F 1.39904 * 109.47231 * 248.29185 * 22 21 20 24 24 F 1.39904 * 109.46970 * 8.28764 * 22 21 20 25 25 F 1.39898 * 109.47311 * 128.28567 * 22 21 20 26 26 H 4.40645 * 5.51554 * 180.02562 * 4 1 2 27 27 H 1.09001 * 109.47238 * 23.90270 * 3 2 1 28 28 H 1.09004 * 109.46958 * 263.90729 * 3 2 1 29 29 H 0.97004 * 120.00655 * 180.02562 * 8 7 5 30 30 H 1.07996 * 126.13160 * 0.03078 * 17 16 13 31 31 H 1.09000 * 109.46602 * 270.26064 * 19 18 17 32 32 H 1.08996 * 109.47049 * 30.25685 * 19 18 17 33 33 H 1.08998 * 109.47184 * 150.26214 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 1.1170 -0.8137 5 6 3.3006 2.3537 -0.2498 6 1 3.7071 3.1642 -0.8365 7 6 2.9472 2.5654 1.0757 8 7 2.0756 1.7706 1.6595 9 14 3.7087 3.9787 2.0310 10 1 4.6519 4.7176 1.1539 11 1 2.6376 4.8980 2.4927 12 1 4.4421 3.4434 3.2062 13 16 3.4901 0.8817 -2.4137 14 8 2.6496 -0.1731 -2.8610 15 8 3.5080 2.1692 -3.0144 16 6 5.1410 0.2711 -2.4962 17 6 5.5209 -0.9337 -2.9811 18 7 6.8633 -1.0168 -2.8703 19 6 7.6932 -2.1528 -3.2792 20 7 7.3226 0.1727 -2.2901 21 6 6.2895 0.9438 -2.0662 22 6 6.3301 2.3193 -1.4520 23 9 5.7305 2.2837 -0.1885 24 9 7.6601 2.7344 -1.3254 25 9 5.6376 3.2167 -2.2718 26 1 -1.0502 -0.0001 0.0003 27 1 3.0098 -0.9387 -0.4164 28 1 3.0093 0.1099 1.0219 29 1 1.8283 1.9187 2.5857 30 1 4.8674 -1.6918 -3.3866 31 1 7.7924 -2.8487 -2.4462 32 1 7.2247 -2.6600 -4.1226 33 1 8.6799 -1.7947 -3.5730 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293095104.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:16 Heat of formation + Delta-G solvation = -42.943105 kcal Electronic energy + Delta-G solvation = -29164.481002 eV Core-core repulsion = 24522.250484 eV Total energy + Delta-G solvation = -4642.230518 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.049 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -49.55376 -47.12762 -46.91862 -41.33481 -36.22432 -36.06457 -34.67627 -33.81367 -31.81961 -30.99579 -30.53713 -28.29463 -26.51364 -25.07535 -23.74084 -21.79762 -20.89446 -18.80017 -18.17239 -17.93606 -17.85224 -17.66479 -16.83507 -16.43017 -16.24890 -15.67618 -15.26186 -14.65012 -14.34716 -13.97395 -13.86862 -13.62418 -13.47343 -13.33023 -13.27195 -13.10165 -13.06691 -12.99891 -12.96816 -12.41819 -11.91522 -11.60292 -11.50383 -11.21052 -10.94080 -10.88445 -10.77626 -10.38218 -10.30741 -10.09059 -9.75975 -9.58822 -9.17948 -9.04674 -8.74671 -8.15976 -6.33711 -3.75188 1.35532 1.53285 2.01713 2.08272 3.11629 3.22967 3.32259 3.37915 3.84169 3.95808 4.20267 4.27554 4.31990 4.55611 4.60291 4.71982 4.77637 4.84256 4.88715 5.08544 5.11152 5.23435 5.53177 5.67483 5.85810 5.99128 6.17603 6.68823 6.84282 7.08431 7.18868 7.34469 7.51709 8.34199 8.81987 9.03957 9.21269 10.62015 Molecular weight = 337.05amu Principal moments of inertia in cm(-1) A = 0.012404 B = 0.007579 C = 0.005616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2256.755212 B = 3693.756157 C = 4984.207403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.271 4.271 2 C -0.092 4.092 3 C 0.245 3.755 4 N -0.821 5.821 5 C -0.283 4.283 6 H 0.120 0.880 7 C 0.048 3.952 8 N -0.839 5.839 9 Si 0.896 3.104 10 H -0.263 1.263 11 H -0.282 1.282 12 H -0.278 1.278 13 S 2.621 3.379 14 O -0.980 6.980 15 O -0.955 6.955 16 C -0.769 4.769 17 C 0.160 3.840 18 N -0.361 5.361 19 C 0.093 3.907 20 N -0.248 5.248 21 C 0.070 3.930 22 C 0.531 3.469 23 F -0.132 7.132 24 F -0.179 7.179 25 F -0.143 7.143 26 H 0.198 0.802 27 H 0.055 0.945 28 H 0.119 0.881 29 H 0.270 0.730 30 H 0.198 0.802 31 H 0.083 0.917 32 H 0.095 0.905 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.504 -7.679 -4.663 12.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.095 4.095 3 C 0.120 3.880 4 N -0.650 5.650 5 C -0.421 4.421 6 H 0.137 0.863 7 C -0.160 4.160 8 N -0.479 5.479 9 Si 0.722 3.278 10 H -0.187 1.187 11 H -0.209 1.209 12 H -0.204 1.204 13 S 2.710 3.290 14 O -0.970 6.970 15 O -0.944 6.944 16 C -0.857 4.857 17 C 0.011 3.989 18 N -0.142 5.142 19 C -0.047 4.047 20 N -0.070 5.070 21 C -0.100 4.100 22 C 0.474 3.526 23 F -0.113 7.113 24 F -0.160 7.160 25 F -0.124 7.124 26 H 0.215 0.785 27 H 0.073 0.927 28 H 0.137 0.863 29 H 0.081 0.919 30 H 0.215 0.785 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.442 -7.895 -5.325 13.410 hybrid contribution 0.100 0.563 0.926 1.088 sum 9.542 -7.332 -4.399 12.813 Atomic orbital electron populations 1.24204 0.95328 1.04252 1.05296 1.22946 0.94084 0.96389 0.96063 1.17979 0.84693 0.86037 0.99322 1.53729 1.67367 1.13804 1.30075 1.19650 1.40864 0.85337 0.96251 0.86270 1.25087 0.95585 0.98764 0.96600 1.70173 1.25711 1.38751 1.13283 0.86342 0.79803 0.81485 0.80138 1.18673 1.20854 1.20402 1.06411 0.74501 0.73365 0.74757 1.93444 1.64879 1.57755 1.80897 1.93484 1.86689 1.38641 1.75621 1.33084 1.27286 1.04851 1.20468 1.22538 0.84619 0.96857 0.94897 1.49027 1.05858 1.13488 1.45783 1.22073 0.96193 0.85030 1.01435 1.77258 1.21059 0.92898 1.15773 1.21624 0.92114 0.95212 1.01093 1.17253 0.74280 0.82968 0.78118 1.93496 1.82051 1.96324 1.39397 1.93181 1.35446 1.91390 1.96006 1.93377 1.78568 1.68506 1.71913 0.78524 0.92674 0.86307 0.91916 0.78484 0.89885 0.88631 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.93 19.25 29.55 0.57 -5.36 16 2 C -0.09 -2.16 11.59 -37.12 -0.43 -2.59 16 3 C 0.24 5.46 5.10 -6.83 -0.03 5.43 16 4 N -0.82 -19.35 2.88 -62.77 -0.18 -19.53 16 5 C -0.28 -7.06 6.18 -15.06 -0.09 -7.15 16 6 H 0.12 3.03 5.68 -52.49 -0.30 2.73 16 7 C 0.05 1.18 5.06 -17.43 -0.09 1.09 16 8 N -0.84 -20.83 8.81 55.49 0.49 -20.34 16 9 Si 0.90 19.65 29.03 -169.99 -4.94 14.72 16 10 H -0.26 -5.74 7.11 56.52 0.40 -5.33 16 11 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 13 S 2.62 58.63 5.44 -107.50 -0.58 58.05 16 14 O -0.98 -22.37 16.94 -57.17 -0.97 -23.34 16 15 O -0.96 -23.70 14.41 -57.17 -0.82 -24.52 16 16 C -0.77 -14.66 6.12 -40.01 -0.24 -14.91 16 17 C 0.16 2.39 11.12 -17.22 -0.19 2.19 16 18 N -0.36 -4.97 4.01 -68.16 -0.27 -5.24 16 19 C 0.09 0.70 11.47 59.85 0.69 1.38 16 20 N -0.25 -4.34 12.36 33.67 0.42 -3.92 16 21 C 0.07 1.36 6.52 -82.41 -0.54 0.82 16 22 C 0.53 10.76 3.21 36.00 0.12 10.88 16 23 F -0.13 -2.81 12.81 2.25 0.03 -2.78 16 24 F -0.18 -3.35 17.15 2.25 0.04 -3.31 16 25 F -0.14 -3.08 13.83 2.25 0.03 -3.05 16 26 H 0.20 3.51 7.80 -54.08 -0.42 3.09 16 27 H 0.06 1.07 7.81 -51.93 -0.41 0.66 16 28 H 0.12 2.72 6.03 -51.93 -0.31 2.40 16 29 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 30 H 0.20 2.19 8.06 -52.49 -0.42 1.77 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 312.73 15.07 4.71 4.71 Total: -1.00 -32.00 312.73 -4.56 -36.56 By element: Atomic # 1 Polarization: 2.48 SS G_CDS: -2.26 Total: 0.21 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -0.25 Total: -8.21 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: 0.45 Total: -49.04 kcal Atomic # 8 Polarization: -46.07 SS G_CDS: -1.79 Total: -47.86 kcal Atomic # 9 Polarization: -9.24 SS G_CDS: 0.10 Total: -9.14 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.94 Total: 14.72 kcal Atomic # 16 Polarization: 58.63 SS G_CDS: -0.58 Total: 58.05 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.00 -4.56 -36.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293095104.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.384 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds