Wall clock time and date at job start Tue Mar 31 2020 20:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35681 * 116.99941 * 2 1 4 4 C 1.38474 * 120.10503 * 359.73020 * 3 2 1 5 5 C 1.38728 * 120.03953 * 179.72354 * 4 3 2 6 6 N 1.39993 * 119.87396 * 180.25771 * 5 4 3 7 7 C 1.35132 * 127.38958 * 5.91002 * 6 5 4 8 8 N 1.30722 * 107.25985 * 179.97438 * 7 6 5 9 9 N 1.28413 * 110.65803 * 0.02562 * 8 7 6 10 10 N 1.28946 * 110.21745 * 359.72652 * 9 8 7 11 11 C 1.39312 * 120.25516 * 0.55111 * 5 4 3 12 12 Cl 1.73603 * 119.89068 * 179.74836 * 11 5 4 13 13 C 1.37660 * 120.21606 * 359.72539 * 11 5 4 14 14 C 1.39891 * 119.95414 * 359.97438 * 13 11 5 15 15 C 1.47286 * 120.12660 * 179.97438 * 14 13 11 16 16 O 1.21643 * 120.00120 * 138.21242 * 15 14 13 17 17 N 1.34778 * 119.99981 * 318.20919 * 15 14 13 18 18 C 1.46497 * 120.00022 * 7.79817 * 17 15 14 19 19 C 1.36906 * 120.00032 * 187.79086 * 17 15 14 20 20 H 1.08004 * 119.99963 * 318.54609 * 19 17 15 21 21 C 1.39020 * 120.00101 * 138.54604 * 19 17 15 22 22 N 1.31390 * 119.99540 * 39.85752 * 21 19 17 23 23 Si 1.86797 * 120.00292 * 219.85849 * 21 19 17 24 24 H 1.48501 * 109.46980 * 89.99672 * 23 21 19 25 25 H 1.48495 * 109.47062 * 210.00067 * 23 21 19 26 26 H 1.48507 * 109.46966 * 330.00003 * 23 21 19 27 27 H 1.09007 * 109.47106 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47672 * 59.99495 * 1 2 3 29 29 H 1.09008 * 109.46764 * 299.99151 * 1 2 3 30 30 H 1.07992 * 119.98125 * 359.97438 * 4 3 2 31 31 H 1.07992 * 126.36523 * 359.97438 * 7 6 5 32 32 H 1.07997 * 120.02558 * 180.02562 * 13 11 5 33 33 H 1.08997 * 109.47827 * 100.16179 * 18 17 15 34 34 H 1.09005 * 109.47032 * 220.15795 * 18 17 15 35 35 H 1.08997 * 109.47420 * 340.15406 * 18 17 15 36 36 H 0.97000 * 119.99497 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 1.2929 2.3716 -0.0056 5 6 1.9241 3.6070 0.0002 6 7 1.1604 4.7803 -0.0001 7 6 -0.1828 4.8851 0.1050 8 7 -0.4771 6.1580 0.0612 9 7 0.5874 6.8650 -0.0649 10 7 1.6266 6.1027 -0.1044 11 6 3.3151 3.6846 0.0001 12 17 4.0951 5.2355 0.0008 13 6 4.0730 2.5354 0.0000 14 6 3.4458 1.2850 0.0005 15 6 4.2531 0.0531 -0.0002 16 8 3.9300 -0.8862 0.7020 17 7 5.3497 -0.0336 -0.7790 18 6 5.8367 1.1495 -1.4926 19 6 6.0086 -1.2272 -0.9031 20 1 6.1607 -1.8528 -0.0359 21 6 6.4819 -1.6341 -2.1453 22 7 7.0255 -0.7584 -2.9601 23 14 6.3450 -3.4257 -2.6559 24 1 5.0525 -3.6442 -3.3537 25 1 7.4647 -3.7670 -3.5696 26 1 6.4088 -4.2904 -1.4502 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5137 0.8901 30 1 0.2144 2.3167 -0.0105 31 1 -0.8827 4.0690 0.2063 32 1 5.1511 2.5991 0.0003 33 1 6.6746 1.5836 -0.9472 34 1 6.1636 0.8621 -2.4920 35 1 5.0343 1.8832 -1.5698 36 1 7.3560 -1.0424 -3.8267 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337555133.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:26 Heat of formation + Delta-G solvation = 96.012073 kcal Electronic energy + Delta-G solvation = -26661.854735 eV Core-core repulsion = 22597.755550 eV Total energy + Delta-G solvation = -4064.099184 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 337.073 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.33898 -41.87979 -39.97082 -39.18852 -37.40786 -36.65624 -36.15377 -33.90280 -33.45377 -31.84122 -31.26283 -28.56870 -28.07800 -27.23712 -25.84850 -24.86135 -23.76055 -22.75959 -21.52433 -20.25267 -19.10965 -18.32263 -18.04006 -17.81413 -17.42870 -17.14349 -16.98845 -16.79833 -16.13498 -15.92573 -15.64198 -15.38173 -14.85330 -14.80047 -14.49727 -14.23787 -13.98209 -13.62698 -13.49600 -13.27935 -13.11967 -13.02616 -12.83110 -12.56619 -12.52069 -12.37565 -12.20640 -12.10803 -11.66678 -11.56891 -11.48737 -10.65011 -10.53362 -10.11912 -9.67586 -9.35449 -8.57439 -5.98389 -1.04228 -0.15814 0.26039 0.50768 0.93365 1.15172 1.33446 1.42595 1.51870 1.84016 2.17335 2.19815 2.41167 2.68433 2.82806 3.03430 3.22059 3.43456 3.62535 3.69772 3.83685 3.99768 4.18432 4.24824 4.31744 4.43894 4.45158 4.51577 4.62690 4.69642 4.81844 4.88940 4.99828 5.26794 5.28394 5.67028 6.16389 6.25868 6.52119 7.10272 7.23901 7.35270 7.99816 8.42000 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.017037 B = 0.003715 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1643.113753 B = 7536.101712 C = 8669.888972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 O -0.313 6.313 3 C 0.197 3.803 4 C -0.183 4.183 5 C 0.190 3.810 6 N -0.334 5.334 7 C 0.250 3.750 8 N -0.351 5.351 9 N -0.062 5.062 10 N -0.075 5.075 11 C -0.081 4.081 12 Cl -0.028 7.028 13 C -0.032 4.032 14 C -0.140 4.140 15 C 0.487 3.513 16 O -0.607 6.607 17 N -0.447 5.447 18 C 0.045 3.955 19 C -0.380 4.380 20 H 0.068 0.932 21 C 0.044 3.956 22 N -0.840 5.840 23 Si 0.955 3.045 24 H -0.273 1.273 25 H -0.267 1.267 26 H -0.274 1.274 27 H 0.112 0.888 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.204 0.796 31 H 0.297 0.703 32 H 0.159 0.841 33 H 0.043 0.957 34 H 0.107 0.893 35 H 0.071 0.929 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.789 8.134 1.645 16.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 O -0.224 6.224 3 C 0.147 3.853 4 C -0.205 4.205 5 C 0.095 3.905 6 N -0.124 5.124 7 C -0.045 4.045 8 N -0.199 5.199 9 N -0.057 5.057 10 N -0.060 5.060 11 C -0.110 4.110 12 Cl 0.001 6.999 13 C -0.052 4.052 14 C -0.145 4.145 15 C 0.277 3.723 16 O -0.494 6.494 17 N -0.165 5.165 18 C -0.097 4.097 19 C -0.506 4.506 20 H 0.085 0.915 21 C -0.165 4.165 22 N -0.473 5.473 23 Si 0.778 3.222 24 H -0.199 1.199 25 H -0.192 1.192 26 H -0.199 1.199 27 H 0.130 0.870 28 H 0.104 0.896 29 H 0.106 0.894 30 H 0.221 0.779 31 H 0.312 0.688 32 H 0.176 0.824 33 H 0.061 0.939 34 H 0.125 0.875 35 H 0.089 0.911 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.381 9.106 1.661 17.102 hybrid contribution 0.528 -1.537 -0.130 1.630 sum -13.853 7.569 1.531 15.860 Atomic orbital electron populations 1.23700 0.75197 1.06467 1.03850 1.86395 1.24570 1.25084 1.86331 1.18614 0.89866 0.85405 0.91452 1.20911 1.02767 0.86718 1.10054 1.16989 0.87998 0.82771 1.02707 1.48997 1.07361 1.06196 1.49821 1.28602 0.83903 0.98681 0.93323 1.74425 1.21500 1.01775 1.22211 1.78110 0.93280 1.24060 1.10245 1.83135 1.18402 0.83678 1.20801 1.20330 0.90721 0.88794 1.11180 1.98416 1.80226 1.24499 1.96742 1.21190 1.01411 0.88041 0.94529 1.19578 0.92445 0.93702 1.08764 1.18189 0.81742 0.87506 0.84899 1.90606 1.72331 1.41410 1.45014 1.43522 1.21797 1.09763 1.41401 1.22973 0.97808 0.87468 1.01413 1.19034 1.39822 0.96939 0.94782 0.91457 1.26065 0.92656 1.03023 0.94749 1.69908 1.29098 1.37421 1.10880 0.85574 0.78457 0.79827 0.78331 1.19906 1.19217 1.19854 0.87013 0.89567 0.89391 0.77927 0.68790 0.82369 0.93864 0.87539 0.91095 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.02 9.81 113.37 1.11 1.13 16 2 O -0.31 -9.32 9.31 -75.62 -0.70 -10.03 16 3 C 0.20 5.62 6.66 22.83 0.15 5.77 16 4 C -0.18 -3.29 8.46 22.44 0.19 -3.10 16 5 C 0.19 4.14 6.69 38.21 0.26 4.40 16 6 N -0.33 -6.83 3.84 -190.93 -0.73 -7.56 16 7 C 0.25 3.39 12.14 180.17 2.19 5.57 16 8 N -0.35 -7.48 12.15 -60.11 -0.73 -8.21 16 9 N -0.06 -1.65 13.39 37.02 0.50 -1.16 16 10 N -0.07 -1.98 10.81 37.02 0.40 -1.58 16 11 C -0.08 -2.16 6.33 22.39 0.14 -2.02 16 12 Cl -0.03 -0.75 25.97 -2.72 -0.07 -0.82 16 13 C -0.03 -0.98 7.09 22.53 0.16 -0.82 16 14 C -0.14 -5.08 5.29 -20.00 -0.11 -5.19 16 15 C 0.49 23.69 7.05 86.62 0.61 24.31 16 16 O -0.61 -34.06 16.10 10.20 0.16 -33.89 16 17 N -0.45 -22.66 2.99 -662.79 -1.98 -24.64 16 18 C 0.05 1.95 8.57 127.77 1.09 3.05 16 19 C -0.38 -21.21 8.77 84.09 0.74 -20.47 16 20 H 0.07 4.07 7.92 -2.91 -0.02 4.05 16 21 C 0.04 2.24 5.36 84.95 0.46 2.70 16 22 N -0.84 -41.74 10.63 21.68 0.23 -41.50 16 23 Si 0.96 40.97 29.69 68.60 2.04 43.01 16 24 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 25 H -0.27 -10.60 7.11 99.48 0.71 -9.89 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 27 H 0.11 1.43 8.14 -2.38 -0.02 1.41 16 28 H 0.09 0.69 7.65 -2.39 -0.02 0.67 16 29 H 0.09 0.69 7.67 -2.38 -0.02 0.67 16 30 H 0.20 1.22 5.11 -2.91 -0.01 1.21 16 31 H 0.30 -0.24 7.20 -2.91 -0.02 -0.27 16 32 H 0.16 4.97 5.85 -2.91 -0.02 4.96 16 33 H 0.04 1.77 7.86 -2.39 -0.02 1.75 16 34 H 0.11 5.00 5.05 -2.38 -0.01 4.98 16 35 H 0.07 2.59 4.51 -2.39 -0.01 2.58 16 36 H 0.28 12.88 8.31 -92.71 -0.77 12.11 16 Total: -1.00 -76.43 323.72 7.27 -69.16 By element: Atomic # 1 Polarization: 0.72 SS G_CDS: 1.18 Total: 1.89 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 6.99 Total: 15.32 kcal Atomic # 7 Polarization: -82.32 SS G_CDS: -2.32 Total: -84.65 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -0.54 Total: -43.92 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.04 Total: 43.01 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -0.07 Total: -0.82 kcal Total: -76.43 7.27 -69.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337555133.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.173 kcal (2) G-P(sol) polarization free energy of solvation -76.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds