Wall clock time and date at job start Tue Mar 31 2020 20:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 S 1.75362 * 124.31207 * 2 1 4 4 C 1.75753 * 92.18295 * 179.97438 * 3 2 1 5 5 N 1.33948 * 131.27367 * 179.43697 * 4 3 2 6 6 C 1.31279 * 121.05700 * 179.97438 * 5 4 3 7 7 C 1.50702 * 118.90410 * 180.02562 * 6 5 4 8 8 N 1.32081 * 122.19163 * 0.02562 * 6 5 4 9 9 C 1.32545 * 121.17573 * 359.97438 * 8 6 5 10 10 S 1.76198 * 120.53541 * 179.97438 * 9 8 6 11 11 C 1.81008 * 99.99946 * 359.97438 * 10 9 8 12 12 C 1.50697 * 109.46759 * 179.97438 * 11 10 9 13 13 O 1.21291 * 120.00763 * 359.72926 * 12 11 10 14 14 N 1.34784 * 119.99774 * 180.02562 * 12 11 10 15 15 C 1.37092 * 119.99968 * 179.72830 * 14 12 11 16 16 H 1.08005 * 120.00127 * 359.97438 * 15 14 12 17 17 C 1.38955 * 120.00107 * 179.97438 * 15 14 12 18 18 N 1.31413 * 119.99828 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00407 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46887 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47066 * 120.00183 * 19 17 15 22 22 H 1.48499 * 109.47339 * 240.00683 * 19 17 15 23 23 C 1.39710 * 109.61669 * 359.67858 * 4 3 2 24 24 C 1.31909 * 124.31089 * 179.46645 * 2 1 3 25 25 C 1.50704 * 122.59670 * 0.02679 * 24 2 1 26 26 H 1.08995 * 109.47139 * 270.52650 * 1 2 3 27 27 H 1.08992 * 109.47147 * 30.53495 * 1 2 3 28 28 H 1.09000 * 109.47035 * 150.53250 * 1 2 3 29 29 H 1.09004 * 109.47101 * 269.98439 * 7 6 5 30 30 H 1.09001 * 109.46761 * 29.97827 * 7 6 5 31 31 H 1.08998 * 109.46840 * 149.98377 * 7 6 5 32 32 H 1.09001 * 109.46816 * 60.00508 * 11 10 9 33 33 H 1.08993 * 109.47387 * 300.00147 * 11 10 9 34 34 H 0.97005 * 119.99846 * 359.72750 * 14 12 11 35 35 H 0.96990 * 120.00373 * 180.02562 * 18 17 15 36 36 H 1.09000 * 109.46613 * 269.97783 * 25 24 2 37 37 H 1.09001 * 109.46818 * 29.96953 * 25 24 2 38 38 H 1.08999 * 109.47431 * 149.97351 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4955 1.4485 0.0000 4 6 3.9839 0.5137 0.0008 5 7 5.2675 0.8963 -0.0087 6 6 6.2378 0.0120 -0.0054 7 6 7.6648 0.4964 -0.0159 8 7 6.0050 -1.2880 0.0069 9 6 4.7678 -1.7635 0.0171 10 16 4.4766 -3.5011 0.0327 11 6 6.1827 -4.1058 0.0283 12 6 6.1815 -5.6127 0.0411 13 8 5.1307 -6.2184 0.0572 14 7 7.3482 -6.2875 0.0409 15 6 7.3473 -7.6583 0.0582 16 1 6.4116 -8.1976 0.0725 17 6 8.5501 -8.3541 0.0574 18 7 9.6886 -7.6980 0.0405 19 14 8.5488 -10.2218 0.0817 20 1 7.1484 -10.7157 0.0990 21 1 9.2386 -10.7331 -1.1300 22 1 9.2583 -10.7016 1.2948 23 6 3.6812 -0.8501 0.0084 24 6 2.2505 -1.0895 0.0101 25 6 1.6595 -2.4757 0.0225 26 1 -0.3633 0.0094 1.0276 27 1 -0.3633 0.8851 -0.5221 28 1 -0.3633 -0.8947 -0.5055 29 1 8.0044 0.6040 -1.0461 30 1 7.7249 1.4606 0.4890 31 1 8.2971 -0.2250 0.5017 32 1 6.7015 -3.7357 0.9126 33 1 6.6919 -3.7501 -0.8673 34 1 8.1886 -5.8032 0.0284 35 1 10.5282 -8.1835 0.0395 36 1 1.5170 -2.8007 1.0531 37 1 0.6982 -2.4654 -0.4914 38 1 2.3356 -3.1636 -0.4853 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339923444.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:53 Heat of formation + Delta-G solvation = -4.082241 kcal Electronic energy + Delta-G solvation = -23230.465476 eV Core-core repulsion = 19710.362798 eV Total energy + Delta-G solvation = -3520.102679 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 337.066 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.11762 -40.16320 -38.48739 -36.10699 -34.90827 -33.80244 -33.43379 -31.18019 -30.62073 -29.67214 -27.34870 -26.72333 -25.30102 -24.00169 -21.46902 -20.52116 -20.11443 -19.41573 -19.01908 -17.86926 -17.61960 -16.87377 -16.85086 -16.48293 -16.23498 -15.85329 -15.29494 -15.18970 -14.64596 -14.57860 -14.37342 -14.01760 -13.83498 -13.69875 -13.61880 -13.57949 -13.44451 -13.24304 -12.95906 -12.90288 -12.78388 -12.46524 -12.28597 -12.11652 -11.91394 -11.85647 -11.59827 -11.38099 -10.64634 -10.39794 -10.14358 -10.08905 -9.38048 -8.70461 -8.53102 -6.03250 -0.79784 -0.42788 -0.06101 0.14445 0.75551 0.91168 0.99758 1.33602 1.42153 1.56579 1.86707 2.26984 2.35446 2.89704 3.03416 3.11947 3.13083 3.32404 3.56887 3.85217 4.10209 4.16455 4.18265 4.34763 4.40240 4.60599 4.65289 4.65969 4.69052 4.70960 4.79024 4.83824 5.08508 5.21865 5.22540 5.36624 5.43828 5.57095 5.87959 6.44694 6.78466 7.01094 7.39601 7.91646 8.64190 Molecular weight = 337.07amu Principal moments of inertia in cm(-1) A = 0.019254 B = 0.002760 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.874281 B =10144.262316 C =11567.052481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.163 4.163 3 S 0.193 5.807 4 C 0.075 3.925 5 N -0.515 5.515 6 C 0.332 3.668 7 C -0.079 4.079 8 N -0.543 5.543 9 C 0.182 3.818 10 S 0.076 5.924 11 C -0.136 4.136 12 C 0.451 3.549 13 O -0.618 6.618 14 N -0.556 5.556 15 C -0.336 4.336 16 H 0.086 0.914 17 C -0.010 4.010 18 N -0.916 5.916 19 Si 0.997 3.003 20 H -0.270 1.270 21 H -0.270 1.270 22 H -0.270 1.270 23 C -0.181 4.181 24 C -0.088 4.088 25 C -0.103 4.103 26 H 0.096 0.904 27 H 0.088 0.912 28 H 0.098 0.902 29 H 0.102 0.898 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.399 0.601 35 H 0.280 0.720 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.296 19.442 -0.135 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.279 4.279 3 S 0.453 5.547 4 C -0.177 4.177 5 N -0.235 5.235 6 C 0.058 3.942 7 C -0.138 4.138 8 N -0.265 5.265 9 C -0.082 4.082 10 S 0.317 5.683 11 C -0.287 4.287 12 C 0.236 3.764 13 O -0.506 6.506 14 N -0.192 5.192 15 C -0.466 4.466 16 H 0.104 0.896 17 C -0.210 4.210 18 N -0.556 5.556 19 Si 0.820 3.180 20 H -0.194 1.194 21 H -0.195 1.195 22 H -0.195 1.195 23 C -0.200 4.200 24 C -0.100 4.100 25 C -0.162 4.162 26 H 0.114 0.886 27 H 0.107 0.893 28 H 0.116 0.884 29 H 0.120 0.880 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.233 0.767 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.125 0.875 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.168 20.149 -0.120 24.632 hybrid contribution 1.879 -1.632 -0.015 2.489 sum -12.290 18.517 -0.136 22.224 Atomic orbital electron populations 1.20629 0.83857 1.05122 1.04678 1.24292 1.02135 0.94198 1.07306 1.83917 0.88506 1.05603 1.76667 1.24270 0.98375 0.94958 1.00097 1.67982 0.97892 1.38915 1.18716 1.23918 0.97656 0.83933 0.88689 1.20717 0.84806 1.02999 1.05233 1.68659 1.20220 1.17617 1.19967 1.24298 0.90578 1.01068 0.92275 1.86531 1.06428 0.88064 1.87292 1.23629 1.00854 0.95618 1.08621 1.19707 0.84391 0.88365 0.83887 1.90521 1.31865 1.70477 1.57697 1.41820 1.07027 1.06913 1.63428 1.19786 0.94467 0.81953 1.50371 0.89647 1.26131 0.93861 1.05323 0.95707 1.69680 0.98163 1.38452 1.49279 0.84817 0.78523 0.76289 0.78399 1.19445 1.19512 1.19507 1.20331 0.95378 0.93816 1.10516 1.19431 0.88506 0.98389 1.03633 1.20814 1.01707 0.89728 1.03956 0.88602 0.89345 0.88401 0.88006 0.88074 0.88674 0.86303 0.86307 0.76704 0.91016 0.89579 0.87538 0.92048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 9.98 71.24 0.71 -0.09 16 2 C -0.16 -2.94 6.38 24.84 0.16 -2.78 16 3 S 0.19 3.87 23.20 -56.49 -1.31 2.55 16 4 C 0.08 2.14 7.69 84.73 0.65 2.79 16 5 N -0.51 -15.29 10.36 -183.88 -1.90 -17.19 16 6 C 0.33 9.56 7.64 138.82 1.06 10.62 16 7 C -0.08 -1.57 10.31 71.24 0.73 -0.83 16 8 N -0.54 -17.46 9.16 -182.68 -1.67 -19.13 16 9 C 0.18 5.93 7.07 85.50 0.60 6.54 16 10 S 0.08 2.63 17.63 -56.49 -1.00 1.63 16 11 C -0.14 -5.11 5.36 71.24 0.38 -4.73 16 12 C 0.45 21.63 7.80 87.65 0.68 22.31 16 13 O -0.62 -33.52 15.44 -3.06 -0.05 -33.57 16 14 N -0.56 -28.57 5.29 -306.97 -1.62 -30.19 16 15 C -0.34 -18.81 9.68 84.04 0.81 -18.00 16 16 H 0.09 5.05 7.16 -2.91 -0.02 5.03 16 17 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 18 N -0.92 -48.76 13.05 21.66 0.28 -48.48 16 19 Si 1.00 42.00 29.55 68.60 2.03 44.03 16 20 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 21 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 23 C -0.18 -5.34 6.03 -20.26 -0.12 -5.46 16 24 C -0.09 -2.06 5.96 -18.96 -0.11 -2.17 16 25 C -0.10 -2.09 9.05 71.24 0.64 -1.45 16 26 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.10 0.72 6.51 -2.39 -0.02 0.70 16 29 H 0.10 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 32 H 0.12 4.18 8.14 -2.39 -0.02 4.16 16 33 H 0.12 4.17 8.14 -2.40 -0.02 4.15 16 34 H 0.40 19.57 7.90 -92.70 -0.73 18.84 16 35 H 0.28 13.88 8.31 -92.72 -0.77 13.11 16 36 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.11 1.48 6.48 -2.39 -0.02 1.46 16 38 H 0.06 1.55 5.14 -10.71 -0.06 1.49 16 Total: -1.00 -69.59 350.08 1.79 -67.80 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.36 Total: 25.82 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: 6.68 Total: 6.73 kcal Atomic # 7 Polarization: -110.08 SS G_CDS: -4.92 Total: -115.00 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -0.05 Total: -33.57 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Atomic # 16 Polarization: 6.49 SS G_CDS: -2.31 Total: 4.18 kcal Total: -69.59 1.79 -67.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339923444.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.721 kcal (2) G-P(sol) polarization free energy of solvation -69.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds