Wall clock time and date at job start Tue Mar 31 2020 19:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86795 * 120.00026 * 2 1 4 4 H 1.48496 * 109.47051 * 239.99879 * 3 2 1 5 5 H 1.48504 * 109.46913 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47376 * 119.99568 * 3 2 1 7 7 C 1.38953 * 120.00002 * 179.97438 * 2 1 3 8 8 H 1.07991 * 119.99852 * 180.02562 * 7 2 1 9 9 N 1.37104 * 119.99798 * 0.02562 * 7 2 1 10 10 C 1.34772 * 119.99472 * 180.02562 * 9 7 2 11 11 O 1.21295 * 120.00575 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99767 * 179.97438 * 10 9 7 13 13 S 1.81000 * 109.47372 * 179.97438 * 12 10 9 14 14 C 1.76194 * 100.00051 * 180.02562 * 13 12 10 15 15 N 1.31276 * 125.82451 * 359.95873 * 14 13 12 16 16 C 1.34378 * 109.35891 * 180.02562 * 15 14 13 17 17 C 1.34391 * 108.40526 * 359.97438 * 16 15 14 18 18 N 1.36395 * 125.81974 * 180.02562 * 14 13 12 19 19 C 1.40198 * 126.53400 * 359.69997 * 18 14 13 20 20 C 1.38857 * 120.05738 * 309.72389 * 19 18 14 21 21 C 1.38110 * 119.96000 * 179.74872 * 20 19 18 22 22 C 1.38278 * 120.07808 * 0.53061 * 21 20 19 23 23 C 1.38382 * 120.11646 * 359.73964 * 22 21 20 24 24 Cl 1.73597 * 119.97951 * 180.02562 * 23 22 21 25 25 C 1.38261 * 120.03786 * 359.97438 * 23 22 21 26 26 H 0.97003 * 120.00071 * 0.02562 * 1 2 3 27 27 H 0.96999 * 120.00014 * 359.97438 * 9 7 2 28 28 H 1.09001 * 109.46922 * 60.00037 * 12 10 9 29 29 H 1.08991 * 109.46966 * 299.99983 * 12 10 9 30 30 H 1.07996 * 125.79379 * 179.97438 * 16 15 14 31 31 H 1.08004 * 126.52260 * 180.02562 * 17 16 15 32 32 H 1.08005 * 120.01952 * 0.02562 * 20 19 18 33 33 H 1.07994 * 119.96332 * 180.24754 * 21 20 19 34 34 H 1.07997 * 119.94433 * 179.72573 * 22 21 20 35 35 H 1.07999 * 120.03683 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.1018 1.6963 -1.2125 5 1 1.2830 2.7464 -0.0006 6 1 3.1018 1.6964 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2033 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5578 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2437 -4.8630 0.0022 13 16 2.4199 -6.2387 0.0028 14 6 1.2998 -7.5989 0.0026 15 7 -0.0103 -7.5153 0.0029 16 6 -0.5355 -8.7522 0.0032 17 6 0.4724 -9.6412 0.0025 18 7 1.6461 -8.9181 0.0034 19 6 2.9476 -9.4394 -0.0013 20 6 3.8747 -8.9865 -0.9306 21 6 5.1578 -9.4977 -0.9302 22 6 5.5170 -10.4677 -0.0125 23 6 4.5940 -10.9253 0.9114 24 17 5.0490 -12.1427 2.0622 25 6 3.3100 -10.4127 0.9191 26 1 -0.4850 0.8401 -0.0004 27 1 0.3533 -2.3907 0.0005 28 1 0.6174 -4.9213 -0.8880 29 1 0.6168 -4.9201 0.8919 30 1 -1.5887 -8.9913 0.0039 31 1 0.3804 -10.7173 0.0022 32 1 3.5940 -8.2319 -1.6504 33 1 5.8800 -9.1426 -1.6503 34 1 6.5196 -10.8690 -0.0170 35 1 2.5895 -10.7702 1.6399 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339923981.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:46 Heat of formation + Delta-G solvation = 50.905033 kcal Electronic energy + Delta-G solvation = -22507.455952 eV Core-core repulsion = 18851.860899 eV Total energy + Delta-G solvation = -3655.595053 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 337.039 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.18837 -39.53647 -38.19410 -36.94170 -34.25065 -34.06822 -31.42893 -31.37753 -30.12869 -29.46387 -29.02028 -24.69835 -23.86664 -23.40374 -21.56035 -21.23248 -19.63807 -18.93416 -17.98362 -16.90083 -16.36234 -16.07242 -15.91506 -15.37774 -15.00782 -14.55865 -14.47930 -14.28871 -14.25643 -14.05898 -13.85462 -13.74638 -13.06781 -12.53333 -12.33788 -12.19948 -11.98868 -11.96654 -11.56897 -11.40437 -11.08557 -10.51447 -10.48710 -10.37547 -10.26057 -10.15706 -9.60311 -9.45103 -9.32169 -8.97689 -8.64476 -8.08655 -7.25250 -6.49605 -3.91539 0.47002 0.67461 1.32399 1.59870 1.84691 2.40019 2.66335 2.95919 3.08943 3.15498 3.23012 3.27326 3.74258 4.11845 4.30290 4.47645 4.58612 4.61876 4.81618 4.84140 4.99520 5.16117 5.16354 5.25367 5.39512 5.60290 5.68050 5.68572 5.84608 5.85317 6.03802 6.11195 6.14551 6.55273 6.89431 7.47830 7.77293 7.92709 8.46122 9.05807 9.39903 9.88600 10.67295 Molecular weight = 337.04amu Principal moments of inertia in cm(-1) A = 0.018742 B = 0.002437 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.641840 B =11484.948619 C =12492.788943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.026 3.974 3 Si 0.934 3.066 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.546 5.546 10 C 0.450 3.550 11 O -0.586 6.586 12 C -0.122 4.122 13 S 0.062 5.938 14 C 0.193 3.807 15 N -0.485 5.485 16 C -0.009 4.009 17 C -0.054 4.054 18 N -0.408 5.408 19 C 0.136 3.864 20 C -0.103 4.103 21 C -0.085 4.085 22 C -0.105 4.105 23 C -0.022 4.022 24 Cl -0.061 7.061 25 C -0.106 4.106 26 H 0.275 0.725 27 H 0.396 0.604 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.176 0.824 31 H 0.178 0.822 32 H 0.145 0.855 33 H 0.146 0.854 34 H 0.141 0.859 35 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.594 -24.008 -0.541 24.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.181 5.181 10 C 0.234 3.766 11 O -0.472 6.472 12 C -0.275 4.275 13 S 0.291 5.709 14 C -0.176 4.176 15 N -0.207 5.207 16 C -0.157 4.157 17 C -0.186 4.186 18 N -0.092 5.092 19 C 0.044 3.956 20 C -0.123 4.123 21 C -0.103 4.103 22 C -0.124 4.124 23 C -0.049 4.049 24 Cl -0.032 7.032 25 C -0.126 4.126 26 H 0.085 0.915 27 H 0.230 0.770 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.193 0.807 31 H 0.195 0.805 32 H 0.162 0.838 33 H 0.164 0.836 34 H 0.159 0.841 35 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.071 -23.190 -0.429 23.975 hybrid contribution -1.457 -0.170 0.181 1.478 sum 4.614 -23.360 -0.247 23.813 Atomic orbital electron populations 1.69612 1.06009 1.28613 1.49302 1.25324 0.95673 0.99902 0.96794 0.85867 0.78776 0.80108 0.79199 1.19743 1.20861 1.19737 1.19701 0.93458 0.81879 1.48318 0.87652 1.41740 1.09458 1.04167 1.62771 1.18955 0.87848 0.83857 0.85923 1.90552 1.13260 1.86517 1.56851 1.23613 1.01217 0.94894 1.07743 1.86173 1.02806 0.89745 1.92140 1.26268 0.95767 0.88350 1.07172 1.70912 1.03788 1.24753 1.21262 1.22360 0.99424 0.88050 1.05897 1.22839 0.83886 0.98757 1.13076 1.42933 1.04265 1.05555 1.56441 1.17497 0.83769 0.97399 0.96937 1.21375 0.93286 1.00195 0.97438 1.21073 0.95597 0.95279 0.98380 1.21224 0.99652 0.97239 0.94317 1.20640 0.94350 0.95190 0.94769 1.98391 1.92444 1.53569 1.58755 1.20869 0.95720 0.97599 0.98458 0.91548 0.77005 0.87327 0.87356 0.80709 0.80503 0.83772 0.83582 0.84099 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.07 13.05 55.50 0.72 -23.34 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.70 29.55 -169.99 -5.02 15.67 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.30 -8.36 9.68 -14.93 -0.14 -8.50 16 8 H 0.11 3.01 7.16 -52.49 -0.38 2.63 16 9 N -0.55 -13.82 5.29 -10.96 -0.06 -13.88 16 10 C 0.45 10.67 7.80 -10.99 -0.09 10.59 16 11 O -0.59 -15.63 15.44 5.54 0.09 -15.55 16 12 C -0.12 -2.31 5.68 36.01 0.20 -2.11 16 13 S 0.06 1.07 19.80 -107.50 -2.13 -1.06 16 14 C 0.19 3.05 7.81 -88.48 -0.69 2.36 16 15 N -0.49 -7.84 10.60 -13.38 -0.14 -7.98 16 16 C -0.01 -0.11 11.84 -17.80 -0.21 -0.33 16 17 C -0.05 -0.60 11.32 -16.20 -0.18 -0.79 16 18 N -0.41 -5.37 2.91 -60.74 -0.18 -5.55 16 19 C 0.14 1.56 5.85 -83.60 -0.49 1.07 16 20 C -0.10 -1.09 8.87 -39.40 -0.35 -1.44 16 21 C -0.08 -0.69 10.04 -39.61 -0.40 -1.09 16 22 C -0.11 -0.82 9.83 -39.51 -0.39 -1.21 16 23 C -0.02 -0.20 6.32 -39.52 -0.25 -0.45 16 24 Cl -0.06 -0.50 28.95 -51.86 -1.50 -2.00 16 25 C -0.11 -1.05 9.49 -39.37 -0.37 -1.42 16 26 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 27 H 0.40 9.62 7.90 -40.82 -0.32 9.29 16 28 H 0.11 1.93 8.14 -51.91 -0.42 1.51 16 29 H 0.11 1.95 8.14 -51.92 -0.42 1.53 16 30 H 0.18 1.67 8.06 -52.49 -0.42 1.24 16 31 H 0.18 1.33 8.06 -52.48 -0.42 0.91 16 32 H 0.14 1.59 7.59 -52.48 -0.40 1.19 16 33 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 35 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 344.47 15.07 5.19 5.19 Total: -1.00 -31.88 344.47 -9.67 -41.56 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -3.19 Total: 9.67 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -3.45 Total: -2.73 kcal Atomic # 7 Polarization: -51.09 SS G_CDS: 0.35 Total: -50.75 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.09 Total: -15.55 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 16 Polarization: 1.07 SS G_CDS: -2.13 Total: -1.06 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.88 -9.67 -41.56 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339923981.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.461 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds